Wall clock time and date at job start Sat Apr 11 2020 05:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 110.45556 * 2 1 4 4 O 1.21287 * 120.00058 * 120.70406 * 3 2 1 5 5 N 1.34772 * 120.00454 * 300.70544 * 3 2 1 6 6 C 1.46497 * 120.00394 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47450 * 179.97438 * 6 5 3 8 8 H 1.08996 * 112.84858 * 43.80135 * 7 6 5 9 9 C 1.53776 * 113.61763 * 174.99744 * 7 6 5 10 10 C 1.53777 * 87.08560 * 140.06232 * 9 7 6 11 11 H 1.09001 * 113.61344 * 89.19282 * 10 9 7 12 12 N 1.46895 * 113.62266 * 220.02205 * 10 9 7 13 13 C 1.46893 * 111.00318 * 203.47010 * 12 10 9 14 14 C 1.50708 * 109.47146 * 179.97438 * 13 12 10 15 15 O 1.21288 * 119.99815 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99719 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99349 * 180.02562 * 16 14 13 18 18 H 1.07991 * 120.00515 * 359.97438 * 17 16 14 19 19 C 1.38955 * 119.99490 * 179.97438 * 17 16 14 20 20 N 1.31413 * 120.00236 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99845 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.47194 * 300.00675 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00238 * 21 19 17 25 25 C 1.53790 * 87.17058 * 334.61298 * 10 9 7 26 26 C 1.54512 * 110.51122 * 122.60869 * 2 1 3 27 27 C 1.54477 * 104.06082 * 118.78184 * 26 2 1 28 28 O 1.44425 * 104.80776 * 23.97990 * 27 26 2 29 29 C 1.44787 * 105.28900 * 319.45350 * 28 27 26 30 30 H 1.08992 * 109.47188 * 59.29782 * 1 2 3 31 31 H 1.09000 * 109.46898 * 179.30049 * 1 2 3 32 32 H 1.09006 * 109.47015 * 299.29334 * 1 2 3 33 33 H 0.97001 * 120.00109 * 359.97438 * 5 3 2 34 34 H 1.09001 * 109.47607 * 59.99321 * 6 5 3 35 35 H 1.09003 * 109.47003 * 299.99296 * 6 5 3 36 36 H 1.09004 * 113.61447 * 25.51632 * 9 7 6 37 37 H 1.09001 * 113.69474 * 254.62345 * 9 7 6 38 38 H 1.00899 * 111.00063 * 79.51186 * 12 10 9 39 39 H 1.09002 * 109.47091 * 59.99845 * 13 12 10 40 40 H 1.09000 * 109.47343 * 299.99463 * 13 12 10 41 41 H 0.96996 * 120.00564 * 359.97438 * 16 14 13 42 42 H 0.97001 * 119.99781 * 179.97438 * 20 19 17 43 43 H 1.08997 * 113.61813 * 139.94008 * 25 10 9 44 44 H 1.09000 * 113.61127 * 270.83811 * 25 10 9 45 45 H 1.09001 * 110.50578 * 237.42365 * 26 2 1 46 46 H 1.08997 * 110.51469 * 359.97438 * 26 2 1 47 47 H 1.09007 * 110.36981 * 142.81043 * 27 26 2 48 48 H 1.09002 * 110.37422 * 265.02902 * 27 26 2 49 49 H 1.09008 * 110.42380 * 281.77272 * 29 28 27 50 50 H 1.09001 * 110.48605 * 159.32950 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4119 0.0000 4 8 2.7711 1.7927 0.9031 5 7 1.7338 2.2516 -1.0035 6 6 2.2463 3.6240 -1.0038 7 6 1.7348 4.3592 -2.2443 8 1 0.6787 4.1746 -2.4403 9 6 2.1166 5.8485 -2.2789 10 6 2.3730 5.6670 -3.7843 11 1 1.4916 5.8411 -4.4014 12 7 3.5600 6.3834 -4.2698 13 6 3.4619 6.6485 -5.7113 14 6 4.6944 7.3835 -6.1718 15 8 5.5681 7.6597 -5.3773 16 7 4.8250 7.7347 -7.4664 17 6 5.9465 8.4029 -7.8854 18 1 6.7248 8.6482 -7.1782 19 6 6.0815 8.7646 -9.2203 20 7 5.1346 8.4658 -10.0811 21 14 7.6091 9.6757 -9.7911 22 1 7.5103 9.9431 -11.2485 23 1 7.7214 10.9620 -9.0577 24 1 8.8104 8.8455 -9.5211 25 6 2.6305 4.1809 -3.4837 26 6 2.0714 -0.7799 1.2190 27 6 2.8787 -1.9394 0.5944 28 8 3.2435 -1.4684 -0.7212 29 6 2.0713 -0.7796 -1.2188 30 1 -0.3633 0.5247 -0.8836 31 1 -0.3633 -1.0276 -0.0125 32 1 -0.3633 0.5028 0.8963 33 1 1.1627 1.9471 -1.7260 34 1 3.3360 3.6051 -1.0166 35 1 1.9024 4.1404 -0.1075 36 1 3.0153 6.0822 -1.7081 37 1 1.2867 6.5187 -2.0551 38 1 4.4036 5.8744 -4.0523 39 1 2.5804 7.2581 -5.9094 40 1 3.3792 5.7043 -6.2496 41 1 4.1261 7.5142 -8.1018 42 1 5.2287 8.7186 -11.0128 43 1 2.2139 3.5056 -4.2311 44 1 3.6699 3.9579 -3.2429 45 1 2.7201 -0.1441 1.8217 46 1 1.2491 -1.1650 1.8220 47 1 3.7715 -2.1420 1.1861 48 1 2.2617 -2.8350 0.5212 49 1 1.3294 -1.4966 -1.5707 50 1 2.3441 -0.0913 -2.0188 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565854001.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:29 Heat of formation + Delta-G solvation = -131.446812 kcal Electronic energy + Delta-G solvation = -28847.734253 eV Core-core repulsion = 24680.957600 eV Total energy + Delta-G solvation = -4166.776653 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.75312 -40.59021 -39.88351 -39.22638 -36.26446 -35.85595 -34.88257 -34.24512 -33.23840 -30.84316 -29.26195 -27.79487 -27.32216 -26.56213 -25.81843 -24.38348 -23.25072 -22.38453 -21.32980 -20.87429 -20.14912 -19.82289 -18.40188 -17.75322 -17.32282 -17.02362 -16.89091 -16.74611 -16.40970 -16.35888 -15.99802 -15.87811 -15.67670 -15.41444 -14.96088 -14.89338 -14.39021 -14.07714 -14.02884 -13.76584 -13.55638 -13.51297 -13.34674 -13.27836 -12.99180 -12.85460 -12.65269 -12.63496 -12.46434 -12.44313 -12.13672 -12.02650 -11.88463 -11.66813 -11.53972 -11.50308 -11.29086 -11.00716 -10.60861 -10.33400 -10.13371 -10.02190 -9.20538 -8.47178 -5.95989 1.39345 1.41259 1.52170 1.53319 2.05070 2.09313 2.29126 2.96760 2.97088 3.19969 3.29843 3.48563 3.56133 3.61288 3.68737 3.87999 3.93764 4.00615 4.05931 4.18089 4.27057 4.28608 4.35165 4.43480 4.52378 4.52994 4.60069 4.63213 4.69634 4.73579 4.79368 4.84337 4.88013 4.88923 4.93640 4.94872 5.11236 5.15080 5.22324 5.22921 5.36722 5.40262 5.50171 5.75642 5.94273 6.20823 6.41931 6.49249 6.60126 7.12099 7.18595 7.55868 8.11684 8.69844 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021369 B = 0.001611 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.977849 B =17377.435196 C =17876.529547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 C 0.519 3.481 4 O -0.585 6.585 5 N -0.711 5.711 6 C 0.134 3.866 7 C -0.099 4.099 8 H 0.126 0.874 9 C -0.119 4.119 10 C 0.062 3.938 11 H 0.114 0.886 12 N -0.677 5.677 13 C 0.067 3.933 14 C 0.434 3.566 15 O -0.627 6.627 16 N -0.572 5.572 17 C -0.337 4.337 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.919 5.919 21 Si 0.993 3.007 22 H -0.269 1.269 23 H -0.273 1.273 24 H -0.273 1.273 25 C -0.160 4.160 26 C -0.146 4.146 27 C 0.043 3.957 28 O -0.406 6.406 29 C 0.055 3.945 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.416 0.584 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.343 0.657 39 H 0.105 0.895 40 H 0.068 0.932 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.104 0.896 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.527 -21.900 16.664 33.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.117 4.117 3 C 0.306 3.694 4 O -0.465 6.465 5 N -0.363 5.363 6 C 0.010 3.990 7 C -0.118 4.118 8 H 0.144 0.856 9 C -0.158 4.158 10 C -0.048 4.048 11 H 0.132 0.868 12 N -0.308 5.308 13 C -0.066 4.066 14 C 0.222 3.778 15 O -0.513 6.513 16 N -0.210 5.210 17 C -0.466 4.466 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.559 5.559 21 Si 0.816 3.184 22 H -0.193 1.193 23 H -0.198 1.198 24 H -0.198 1.198 25 C -0.200 4.200 26 C -0.184 4.184 27 C -0.034 4.034 28 O -0.325 6.325 29 C -0.022 4.022 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.253 0.747 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.162 0.838 39 H 0.123 0.877 40 H 0.086 0.914 41 H 0.231 0.769 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.126 0.874 47 H 0.108 0.892 48 H 0.106 0.894 49 H 0.122 0.878 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.489 -20.780 17.653 32.394 hybrid contribution 0.704 -0.226 -1.114 1.337 sum -16.785 -21.006 16.540 31.568 Atomic orbital electron populations 1.21855 0.88458 1.04899 1.03666 1.22224 0.99877 0.91206 0.98363 1.20826 0.79339 0.88025 0.81171 1.90675 1.39286 1.78317 1.38208 1.45854 1.52206 1.12412 1.25789 1.21277 0.97917 0.81303 0.98531 1.22570 1.01054 0.95330 0.92834 0.85588 1.23036 1.01765 0.95389 0.95646 1.23214 0.93353 0.91563 0.96667 0.86764 1.60026 1.05363 1.52438 1.12934 1.21572 0.95691 0.99416 0.89886 1.21016 0.90123 0.84408 0.82266 1.90491 1.45568 1.60829 1.54458 1.41926 1.19893 1.51066 1.08072 1.19629 0.98785 1.34155 0.94069 0.90496 1.26029 1.01675 0.98286 0.95185 1.69660 1.34560 1.47311 1.04409 0.84997 0.77564 0.78406 0.77413 1.19311 1.19804 1.19800 1.23798 0.99912 0.97791 0.98462 1.23077 1.01318 0.96897 0.97078 1.23590 1.00160 0.96664 0.82951 1.89201 1.36585 1.74286 1.32426 1.23788 0.88292 0.95546 0.94572 0.89965 0.88848 0.91945 0.74672 0.93577 0.91935 0.91145 0.89920 0.83805 0.87652 0.91436 0.76887 0.91248 0.89642 0.91312 0.91413 0.87419 0.89210 0.89436 0.87797 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.62 8.19 71.98 0.59 -0.03 16 2 C -0.11 -1.35 0.88 -51.91 -0.05 -1.40 16 3 C 0.52 9.97 6.48 87.66 0.57 10.53 16 4 O -0.58 -17.22 15.28 -3.05 -0.05 -17.27 16 5 N -0.71 -9.77 5.20 -463.07 -2.41 -12.18 16 6 C 0.13 2.27 5.52 86.38 0.48 2.75 16 7 C -0.10 -1.29 3.75 -10.21 -0.04 -1.33 16 8 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 9 C -0.12 -2.19 7.44 31.12 0.23 -1.96 16 10 C 0.06 1.27 4.16 45.44 0.19 1.46 16 11 H 0.11 1.98 7.88 -2.39 -0.02 1.96 16 12 N -0.68 -21.04 6.24 -492.85 -3.07 -24.11 16 13 C 0.07 2.24 6.02 85.56 0.52 2.75 16 14 C 0.43 20.90 7.82 87.66 0.69 21.58 16 15 O -0.63 -35.56 15.78 -3.05 -0.05 -35.61 16 16 N -0.57 -29.58 5.29 -306.98 -1.62 -31.20 16 17 C -0.34 -19.36 9.68 84.04 0.81 -18.55 16 18 H 0.08 4.73 7.16 -2.92 -0.02 4.71 16 19 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 20 N -0.92 -49.53 13.05 21.66 0.28 -49.24 16 21 Si 0.99 43.26 29.55 68.60 2.03 45.28 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 C -0.16 -2.65 7.27 31.18 0.23 -2.43 16 26 C -0.15 -1.95 6.32 31.61 0.20 -1.75 16 27 C 0.04 0.55 7.63 72.48 0.55 1.11 16 28 O -0.41 -7.66 11.66 -148.98 -1.74 -9.40 16 29 C 0.05 0.62 6.74 72.48 0.49 1.11 16 30 H 0.08 0.11 7.59 -2.39 -0.02 0.10 16 31 H 0.09 0.09 8.12 -2.39 -0.02 0.08 16 32 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.42 2.84 7.84 -92.71 -0.73 2.11 16 34 H 0.05 1.03 7.86 -2.39 -0.02 1.02 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.59 8.10 -2.39 -0.02 1.57 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.34 11.59 7.91 -89.69 -0.71 10.88 16 39 H 0.11 3.15 8.13 -2.39 -0.02 3.13 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.40 19.30 7.90 -92.71 -0.73 18.56 16 42 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 43 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.07 1.41 7.59 -2.39 -0.02 1.40 16 45 H 0.07 1.38 6.50 -2.39 -0.02 1.36 16 46 H 0.11 0.86 7.73 -2.39 -0.02 0.84 16 47 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 48 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.10 0.56 7.86 -2.38 -0.02 0.54 16 50 H 0.09 1.03 7.59 -2.39 -0.02 1.02 16 Total: -1.00 -79.38 405.98 -1.91 -81.29 By element: Atomic # 1 Polarization: 39.95 SS G_CDS: -1.20 Total: 38.76 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 5.92 Total: 13.69 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -6.82 Total: -116.74 kcal Atomic # 8 Polarization: -60.45 SS G_CDS: -1.83 Total: -62.28 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -79.38 -1.91 -81.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565854001.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.160 kcal (2) G-P(sol) polarization free energy of solvation -79.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds