Wall clock time and date at job start Sat Apr 11 2020 05:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 120.00061 * 2 1 4 4 C 1.50697 * 120.00313 * 180.02562 * 2 1 3 5 5 C 1.53005 * 109.47164 * 94.99691 * 4 2 1 6 6 H 1.08998 * 109.47016 * 305.00228 * 5 4 2 7 7 N 1.46494 * 109.46869 * 65.00722 * 5 4 2 8 8 C 1.34775 * 120.00572 * 59.99884 * 7 5 4 9 9 C 1.50700 * 119.99980 * 179.97438 * 8 7 5 10 10 O 1.21278 * 119.99515 * 359.97438 * 8 7 5 11 11 C 1.50702 * 109.46695 * 185.00344 * 5 4 2 12 12 O 1.21285 * 119.99825 * 259.99551 * 11 5 4 13 13 N 1.34775 * 120.00097 * 80.00460 * 11 5 4 14 14 C 1.47159 * 120.98147 * 0.02562 * 13 11 5 15 15 C 1.53293 * 108.38067 * 230.51428 * 14 13 11 16 16 O 1.42965 * 109.22407 * 307.69504 * 15 14 13 17 17 C 1.42956 * 114.16423 * 62.58570 * 16 15 14 18 18 H 1.08996 * 109.51866 * 57.34207 * 17 16 15 19 19 C 1.52999 * 109.51439 * 177.44408 * 17 16 15 20 20 N 1.46506 * 109.46974 * 299.99978 * 19 17 16 21 21 C 1.36933 * 119.99828 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00494 * 359.97438 * 21 20 19 23 23 C 1.38819 * 119.99837 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99589 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00027 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47080 * 90.00172 * 25 23 21 27 27 H 1.48501 * 109.47109 * 210.00122 * 25 23 21 28 28 H 1.48497 * 109.47308 * 330.00093 * 25 23 21 29 29 C 1.47147 * 120.98362 * 179.97438 * 13 11 5 30 30 H 1.08001 * 119.99916 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00467 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46859 * 239.99984 * 3 2 1 33 33 H 1.08999 * 109.47330 * 359.97438 * 3 2 1 34 34 H 1.08996 * 109.47169 * 120.00240 * 3 2 1 35 35 H 1.09006 * 109.46898 * 334.99913 * 4 2 1 36 36 H 1.08999 * 109.47425 * 215.00298 * 4 2 1 37 37 H 0.97007 * 119.99525 * 239.99610 * 7 5 4 38 38 H 1.09002 * 109.47025 * 90.00298 * 9 8 7 39 39 H 1.09001 * 109.47089 * 209.99520 * 9 8 7 40 40 H 1.08993 * 109.47100 * 330.00150 * 9 8 7 41 41 H 1.09004 * 109.67950 * 110.79377 * 14 13 11 42 42 H 1.08992 * 109.68172 * 350.23680 * 14 13 11 43 43 H 1.08997 * 109.51158 * 187.77431 * 15 14 13 44 44 H 1.08998 * 109.51442 * 67.62479 * 15 14 13 45 45 H 1.09007 * 109.47103 * 59.99563 * 19 17 16 46 46 H 1.08993 * 109.47723 * 179.97438 * 19 17 16 47 47 H 0.97001 * 119.99999 * 359.97438 * 20 19 17 48 48 H 0.97003 * 119.99257 * 180.02562 * 24 23 21 49 49 H 1.09006 * 109.68272 * 9.76385 * 29 13 11 50 50 H 1.09000 * 109.68727 * 249.21110 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 -0.0006 5 6 2.4273 -1.6832 -1.4378 6 1 1.5244 -1.7024 -2.0481 7 7 3.3630 -0.6954 -1.9807 8 6 4.5553 -0.4974 -1.3843 9 6 5.5179 0.5184 -1.9432 10 8 4.8534 -1.1369 -0.3979 11 6 3.0716 -3.0456 -1.4509 12 8 4.2785 -3.1449 -1.5175 13 7 2.3066 -4.1534 -1.3888 14 6 0.8403 -4.0579 -1.3082 15 6 0.3625 -4.9301 -0.1416 16 8 0.9063 -6.2447 -0.2831 17 6 2.3339 -6.2964 -0.2290 18 1 2.6784 -5.8672 0.7119 19 6 2.7967 -7.7514 -0.3266 20 7 2.2381 -8.5175 0.7903 21 6 2.5169 -9.8526 0.9120 22 1 3.1483 -10.3410 0.1845 23 6 1.9880 -10.5784 1.9705 24 7 1.2181 -9.9833 2.8569 25 14 2.3678 -12.3998 2.1363 26 1 3.5955 -12.5772 2.9527 27 1 1.2292 -13.0846 2.7995 28 1 2.5807 -12.9858 0.7885 29 6 2.9127 -5.4942 -1.4006 30 1 -0.5400 0.9353 0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 2.6901 1.3628 -0.8900 33 1 1.3552 2.1337 -0.0005 34 1 2.6901 1.3629 0.8899 35 1 1.4385 -2.0856 0.4334 36 1 2.9742 -1.1991 0.5889 37 1 3.1243 -0.1837 -2.7695 38 1 5.3315 1.4881 -1.4816 39 1 6.5402 0.2056 -1.7308 40 1 5.3784 0.5964 -3.0214 41 1 0.3976 -4.4143 -2.2384 42 1 0.5488 -3.0220 -1.1355 43 1 -0.7261 -4.9837 -0.1492 44 1 0.6997 -4.4959 0.7996 45 1 2.4534 -8.1794 -1.2685 46 1 3.8852 -7.7901 -0.2857 47 1 1.6707 -8.0790 1.4435 48 1 0.8489 -10.4905 3.5967 49 1 3.9938 -5.4094 -1.2891 50 1 2.6783 -5.9948 -2.3400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570154939.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:50 Heat of formation + Delta-G solvation = -71.414477 kcal Electronic energy + Delta-G solvation = -31053.276498 eV Core-core repulsion = 26889.103043 eV Total energy + Delta-G solvation = -4164.173455 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.04617 -39.53539 -38.00130 -36.84710 -35.00298 -34.37084 -34.28321 -32.27574 -31.31080 -30.13393 -28.92921 -28.08366 -27.44230 -25.93859 -24.26782 -23.48231 -22.42273 -21.21824 -20.65679 -19.10476 -18.76297 -18.02754 -17.22039 -16.87111 -16.54306 -16.19252 -15.66225 -15.42287 -15.28441 -15.05232 -14.88139 -14.46214 -14.27250 -14.25022 -13.97327 -13.70015 -13.50665 -13.26188 -13.10797 -12.82873 -12.68215 -12.59927 -12.41382 -12.14685 -12.07219 -12.03767 -11.66896 -11.57584 -11.41976 -10.98048 -10.86902 -10.75923 -10.47194 -10.20916 -9.99005 -9.85853 -9.82278 -9.65567 -9.57318 -8.96003 -8.82643 -8.48558 -6.84879 -5.68958 -2.97391 1.81959 2.41355 2.57733 2.77530 3.09503 3.48778 3.53326 3.55355 3.95484 4.14564 4.40226 4.55486 4.61814 4.64556 4.70408 4.75755 4.77451 4.84902 4.96014 5.06804 5.11199 5.14186 5.17204 5.31725 5.33400 5.34821 5.46551 5.54249 5.58205 5.62867 5.63707 5.68600 5.70209 5.78692 5.91097 5.99646 6.07602 6.26376 6.31119 6.35964 6.53220 6.60408 6.73267 7.25006 7.26486 7.48383 7.75602 8.04260 8.20470 8.49268 9.60942 10.18456 10.54700 11.53927 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018720 B = 0.002513 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.386873 B =11141.084323 C =11836.483226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 C -0.119 4.119 4 C -0.104 4.104 5 C 0.144 3.856 6 H 0.107 0.893 7 N -0.722 5.722 8 C 0.515 3.485 9 C -0.171 4.171 10 O -0.510 6.510 11 C 0.504 3.496 12 O -0.507 6.507 13 N -0.614 5.614 14 C 0.068 3.932 15 C 0.045 3.955 16 O -0.355 6.355 17 C 0.074 3.926 18 H 0.063 0.937 19 C 0.164 3.836 20 N -0.726 5.726 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.932 5.932 25 Si 0.908 3.092 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.088 3.912 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.403 0.597 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.053 0.947 45 H 0.028 0.972 46 H 0.035 0.965 47 H 0.388 0.612 48 H 0.254 0.746 49 H 0.100 0.900 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.487 28.300 -12.949 31.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.116 4.116 3 C -0.175 4.175 4 C -0.143 4.143 5 C 0.035 3.965 6 H 0.125 0.875 7 N -0.376 5.376 8 C 0.301 3.699 9 C -0.231 4.231 10 O -0.383 6.383 11 C 0.289 3.711 12 O -0.380 6.380 13 N -0.350 5.350 14 C -0.055 4.055 15 C -0.033 4.033 16 O -0.273 6.273 17 C 0.015 3.985 18 H 0.081 0.919 19 C 0.036 3.964 20 N -0.370 5.370 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.739 3.261 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.035 4.035 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.120 0.880 37 H 0.237 0.763 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.123 0.877 44 H 0.072 0.928 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.222 0.778 48 H 0.064 0.936 49 H 0.119 0.881 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.608 27.458 -12.319 30.101 hybrid contribution -0.223 -0.411 -0.061 0.471 sum -0.831 27.048 -12.380 29.758 Atomic orbital electron populations 1.23763 0.94978 1.02081 1.02516 1.21585 0.95094 0.95330 0.99546 1.20916 1.00191 0.94111 1.02322 1.21082 1.02498 0.95395 0.95281 1.20796 0.92184 0.86633 0.96878 0.87507 1.45739 1.17735 1.41361 1.32763 1.20632 0.81618 0.83452 0.84154 1.21871 1.00148 0.98868 1.02170 1.90743 1.75200 1.46640 1.25754 1.20812 0.87608 0.85778 0.76896 1.90752 1.13670 1.86196 1.47424 1.48150 1.06719 1.06198 1.73958 1.22586 0.80357 1.01533 1.01046 1.22907 0.99572 0.84692 0.96107 1.88168 1.20091 1.25518 1.93541 1.22804 0.81090 0.98028 0.96574 0.91912 1.20620 0.96015 0.86681 0.93129 1.42210 1.59564 1.07239 1.27998 1.19231 1.24738 0.85441 1.07534 0.91168 1.24745 1.00304 0.98161 0.97832 1.69683 1.37500 1.35287 1.15595 0.86174 0.77212 0.85213 0.77501 1.21765 1.21803 1.20777 1.22318 1.00148 0.81281 0.99762 0.88321 0.88319 0.91597 0.92124 0.91652 0.89937 0.88020 0.76299 0.89191 0.88869 0.90474 0.90243 0.89325 0.87746 0.92834 0.95406 0.94714 0.77821 0.93592 0.88141 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.26 13.90 29.02 0.40 -0.85 16 2 C -0.12 -0.86 5.14 -101.06 -0.52 -1.38 16 3 C -0.12 -0.78 9.91 36.01 0.36 -0.42 16 4 C -0.10 -1.00 4.38 -27.88 -0.12 -1.13 16 5 C 0.14 1.33 2.14 -69.08 -0.15 1.18 16 6 H 0.11 0.68 6.88 -51.93 -0.36 0.32 16 7 N -0.72 -5.73 3.77 -54.93 -0.21 -5.94 16 8 C 0.51 5.42 6.01 -10.99 -0.07 5.36 16 9 C -0.17 -1.09 10.30 36.01 0.37 -0.72 16 10 O -0.51 -8.05 12.96 -17.93 -0.23 -8.28 16 11 C 0.50 6.82 6.70 -10.99 -0.07 6.75 16 12 O -0.51 -8.99 13.15 -17.93 -0.24 -9.23 16 13 N -0.61 -7.93 3.02 -172.24 -0.52 -8.45 16 14 C 0.07 0.67 6.01 -3.53 -0.02 0.65 16 15 C 0.05 0.56 6.98 37.31 0.26 0.82 16 16 O -0.36 -6.30 10.13 -35.23 -0.36 -6.65 16 17 C 0.07 1.32 2.86 -26.55 -0.08 1.24 16 18 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 19 C 0.16 3.49 5.96 -4.04 -0.02 3.46 16 20 N -0.73 -19.43 5.49 -59.90 -0.33 -19.76 16 21 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 22 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 23 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 24 N -0.93 -29.12 13.06 55.49 0.72 -28.40 16 25 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 29 C 0.09 1.33 5.93 -3.51 -0.02 1.30 16 30 H 0.10 0.54 7.83 -52.49 -0.41 0.13 16 31 H 0.10 0.57 7.99 -52.49 -0.42 0.15 16 32 H 0.07 0.37 6.36 -51.93 -0.33 0.04 16 33 H 0.06 0.32 7.78 -51.93 -0.40 -0.08 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.78 6.77 -51.93 -0.35 0.43 16 36 H 0.10 1.32 6.04 -51.93 -0.31 1.00 16 37 H 0.40 1.76 8.83 -40.82 -0.36 1.40 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 0.61 4.87 -51.93 -0.25 0.35 16 43 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.39 11.02 7.54 -40.82 -0.31 10.71 16 48 H 0.25 7.64 8.31 -40.82 -0.34 7.31 16 49 H 0.10 1.64 7.08 -51.93 -0.37 1.27 16 50 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 397.88 15.07 6.00 6.00 Total: -1.00 -38.46 397.88 -8.18 -46.65 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -8.07 Total: 7.40 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 0.07 Total: 8.66 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: -0.33 Total: -62.56 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.83 Total: -24.16 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.46 -8.18 -46.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570154939.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.769 kcal (2) G-P(sol) polarization free energy of solvation -38.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds