Wall clock time and date at job start Sat Apr 11 2020 05:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47131 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47188 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00025 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00035 * 180.02562 * 5 4 3 8 8 C 1.46507 * 120.00105 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.73248 * 36.95669 * 8 7 5 10 10 C 1.54469 * 110.82577 * 273.54200 * 8 7 5 11 11 O 1.43514 * 107.57753 * 220.41643 * 10 8 7 12 12 C 1.42552 * 109.63983 * 359.35304 * 11 10 8 13 13 C 1.52953 * 116.15380 * 253.37144 * 12 11 10 14 14 N 1.48141 * 85.87077 * 218.81803 * 13 12 11 15 15 C 1.46899 * 111.00098 * 136.93563 * 14 13 12 16 16 C 1.50691 * 109.47139 * 90.44514 * 15 14 13 17 17 O 1.21291 * 120.00235 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00402 * 180.02562 * 16 15 14 19 19 C 1.37094 * 120.00652 * 180.02562 * 18 16 15 20 20 H 1.08010 * 119.99604 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00289 * 180.02562 * 19 18 16 22 22 N 1.31405 * 119.99889 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99988 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47150 * 59.99938 * 23 21 19 25 25 H 1.48500 * 109.47352 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47344 * 299.99805 * 23 21 19 27 27 C 1.48152 * 90.93177 * 23.97259 * 14 13 12 28 28 C 1.54008 * 106.47857 * 23.04914 * 12 11 10 29 29 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 30 30 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 32 32 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 33 33 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 34 34 H 1.09001 * 109.47289 * 299.99953 * 3 2 1 35 35 H 1.09004 * 109.47261 * 59.99697 * 3 2 1 36 36 H 1.09001 * 109.46997 * 299.99574 * 4 3 2 37 37 H 1.08992 * 109.47534 * 59.99520 * 4 3 2 38 38 H 0.96995 * 120.00104 * 359.97438 * 7 5 4 39 39 H 1.09007 * 109.82820 * 339.92354 * 10 8 7 40 40 H 1.08998 * 109.83042 * 100.89762 * 10 8 7 41 41 H 1.09001 * 113.80479 * 333.05982 * 13 12 11 42 42 H 1.09004 * 113.80521 * 104.57520 * 13 12 11 43 43 H 1.09004 * 109.47275 * 210.44395 * 15 14 13 44 44 H 1.08999 * 109.47136 * 330.44190 * 15 14 13 45 45 H 0.97007 * 119.99826 * 359.97438 * 18 16 15 46 46 H 0.97006 * 120.00076 * 180.02562 * 22 21 19 47 47 H 1.09002 * 113.80797 * 221.79207 * 27 14 13 48 48 H 1.08996 * 113.81158 * 90.26498 * 27 14 13 49 49 H 1.08995 * 111.15676 * 206.94617 * 28 12 11 50 50 H 1.09007 * 111.14974 * 82.70985 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0724 2.8633 0.0000 6 8 3.2842 3.7851 0.0004 7 7 5.3974 3.1095 -0.0009 8 6 5.8858 4.4908 -0.0009 9 1 5.2469 5.1260 0.6127 10 6 5.9837 5.0387 -1.4418 11 8 7.1922 5.8075 -1.5320 12 6 7.8570 5.8049 -0.2710 13 6 7.7955 7.1088 0.5263 14 7 9.1997 6.8210 0.9005 15 6 10.0242 8.0344 0.8240 16 6 10.0128 8.7344 2.1584 17 8 9.3798 8.2685 3.0823 18 7 10.7052 9.8786 2.3253 19 6 10.6953 10.5151 3.5394 20 1 10.1322 10.0998 4.3623 21 6 11.4087 11.6950 3.7112 22 7 12.0933 12.2006 2.7099 23 14 11.3946 12.5627 5.3654 24 1 11.9453 11.6560 6.4046 25 1 12.2275 13.7896 5.2880 26 1 10.0003 12.9318 5.7189 27 6 9.3755 5.9827 -0.3084 28 6 7.3627 4.5550 0.4808 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.9337 0.9286 0.8892 37 1 3.9330 0.9288 -0.8907 38 1 6.0277 2.3723 -0.0016 39 1 6.0181 4.2112 -2.1505 40 1 5.1242 5.6743 -1.6549 41 1 7.6785 7.9980 -0.0931 42 1 7.1012 7.0787 1.3661 43 1 11.0475 7.7627 0.5650 44 1 9.6208 8.7002 0.0610 45 1 11.2112 10.2514 1.5863 46 1 12.5917 13.0241 2.8299 47 1 9.9307 5.0621 -0.1285 48 1 9.7326 6.5341 -1.1781 49 1 7.4186 4.6972 1.5600 50 1 7.9155 3.6671 0.1738 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570238528.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:00 Heat of formation + Delta-G solvation = -118.966551 kcal Electronic energy + Delta-G solvation = -28982.229661 eV Core-core repulsion = 24815.994193 eV Total energy + Delta-G solvation = -4166.235468 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.15664 -40.79946 -39.94397 -38.44501 -36.31355 -35.92853 -35.70245 -33.31470 -32.44423 -31.70033 -30.45675 -28.26706 -27.33929 -26.58680 -25.71481 -24.05144 -22.83287 -21.95100 -21.40632 -21.04368 -20.31198 -19.90191 -18.25315 -17.96115 -17.68737 -17.43070 -16.88796 -16.75221 -16.52720 -16.39915 -15.83689 -15.59961 -15.53505 -15.44353 -14.80816 -14.65465 -14.56469 -14.36251 -14.15176 -13.91774 -13.69522 -13.51950 -13.25954 -13.23297 -12.98216 -12.89719 -12.75359 -12.48863 -12.42897 -12.18527 -12.13807 -12.07375 -12.03499 -11.86010 -11.68596 -11.49713 -11.43600 -10.91081 -10.58661 -10.40305 -10.19795 -10.01547 -9.78534 -8.46760 -5.95648 1.39128 1.40663 1.51722 1.60377 2.02676 2.05401 2.27382 2.54009 2.81854 3.16840 3.20285 3.36408 3.45570 3.61991 3.77090 3.89808 3.94867 3.98629 4.07254 4.09302 4.17979 4.32697 4.37773 4.41891 4.48968 4.51614 4.56187 4.60908 4.66076 4.68054 4.72964 4.79536 4.85556 4.89952 4.94322 4.96009 5.03714 5.12491 5.28010 5.29067 5.38936 5.40069 5.40290 5.52267 5.81044 5.93844 6.03877 6.51956 6.60358 7.12646 7.23848 7.56090 8.12530 8.70488 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022132 B = 0.001707 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.836646 B =16402.734727 C =17213.617609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C -0.106 4.106 4 C -0.131 4.131 5 C 0.506 3.494 6 O -0.587 6.587 7 N -0.706 5.706 8 C 0.118 3.882 9 H 0.078 0.922 10 C 0.043 3.957 11 O -0.372 6.372 12 C 0.088 3.912 13 C -0.009 4.009 14 N -0.467 5.467 15 C 0.025 3.975 16 C 0.442 3.558 17 O -0.618 6.618 18 N -0.575 5.575 19 C -0.336 4.336 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.269 1.269 26 H -0.274 1.274 27 C 0.020 3.980 28 C -0.117 4.117 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.422 0.578 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.077 0.923 45 H 0.396 0.604 46 H 0.278 0.722 47 H 0.122 0.878 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.670 -25.987 -12.187 31.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.157 4.157 3 C -0.145 4.145 4 C -0.171 4.171 5 C 0.295 3.705 6 O -0.467 6.467 7 N -0.360 5.360 8 C 0.012 3.988 9 H 0.096 0.904 10 C -0.035 4.035 11 O -0.290 6.290 12 C 0.048 3.952 13 C -0.139 4.139 14 N -0.191 5.191 15 C -0.107 4.107 16 C 0.229 3.771 17 O -0.504 6.504 18 N -0.213 5.213 19 C -0.465 4.465 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.196 1.196 25 H -0.193 1.193 26 H -0.199 1.199 27 C -0.108 4.108 28 C -0.155 4.155 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.260 0.740 39 H 0.109 0.891 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.132 0.868 44 H 0.094 0.906 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.140 0.860 48 H 0.108 0.892 49 H 0.109 0.891 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.290 -25.625 -11.134 30.940 hybrid contribution 0.239 1.506 -0.072 1.526 sum -13.052 -24.120 -11.206 29.626 Atomic orbital electron populations 1.21802 0.96186 1.01997 1.01490 1.21516 0.95781 0.95258 1.03108 1.21357 0.93690 0.97540 1.01873 1.21748 0.97159 0.91140 1.07004 1.21586 0.81841 0.93024 0.74044 1.90723 1.56496 1.48403 1.51085 1.45824 1.07457 1.07578 1.75155 1.22299 0.95683 0.84855 0.95970 0.90396 1.23627 0.86873 0.95759 0.97218 1.88343 1.36427 1.72968 1.31260 1.23308 0.93769 0.94500 0.83670 1.24430 0.92515 0.98469 0.98453 1.68322 1.02325 1.13147 1.35351 1.22343 1.01346 0.93051 0.93933 1.20753 0.82811 0.82363 0.91155 1.90481 1.47525 1.67556 1.44816 1.41934 1.44731 1.21627 1.12987 1.19626 1.30132 1.06019 0.90736 0.90456 1.26020 0.95433 0.97055 1.02633 1.69664 1.31600 1.22042 1.32800 0.85000 0.78408 0.77593 0.77389 1.19644 1.19346 1.19886 1.24235 0.94087 1.00011 0.92450 1.23034 0.93080 0.97678 1.01711 0.93177 0.91773 0.93399 0.90907 0.90625 0.92946 0.93314 0.86313 0.85877 0.73963 0.89095 0.92020 0.90980 0.90673 0.86761 0.90558 0.77033 0.91288 0.85991 0.89197 0.89055 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.91 71.98 0.71 -0.79 16 2 C -0.12 -0.96 5.93 30.60 0.18 -0.77 16 3 C -0.11 -1.32 4.50 30.59 0.14 -1.19 16 4 C -0.13 -1.10 5.70 29.85 0.17 -0.93 16 5 C 0.51 8.52 7.83 87.66 0.69 9.21 16 6 O -0.59 -16.15 15.72 -3.04 -0.05 -16.20 16 7 N -0.71 -9.06 5.14 -436.14 -2.24 -11.31 16 8 C 0.12 2.23 3.29 46.34 0.15 2.38 16 9 H 0.08 1.95 7.71 -2.39 -0.02 1.93 16 10 C 0.04 0.87 7.57 72.48 0.55 1.41 16 11 O -0.37 -8.86 11.16 -148.98 -1.66 -10.53 16 12 C 0.09 2.05 1.47 -10.45 -0.02 2.03 16 13 C -0.01 -0.29 7.45 86.05 0.64 0.35 16 14 N -0.47 -15.04 5.63 -934.36 -5.26 -20.31 16 15 C 0.03 0.88 5.28 85.55 0.45 1.33 16 16 C 0.44 21.69 7.82 87.65 0.69 22.38 16 17 O -0.62 -35.41 16.01 -3.06 -0.05 -35.46 16 18 N -0.58 -30.23 5.29 -306.99 -1.62 -31.85 16 19 C -0.34 -19.48 9.68 84.04 0.81 -18.66 16 20 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 21 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 22 N -0.92 -50.27 13.05 21.66 0.28 -49.98 16 23 Si 0.99 43.61 29.55 68.60 2.03 45.64 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 C 0.02 0.45 7.51 86.04 0.65 1.10 16 28 C -0.12 -2.09 6.02 31.79 0.19 -1.90 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 35 H 0.05 0.81 8.10 -2.38 -0.02 0.79 16 36 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.42 2.22 8.50 -92.71 -0.79 1.44 16 39 H 0.09 1.48 8.02 -2.38 -0.02 1.46 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 2.27 7.48 -2.39 -0.02 2.25 16 42 H 0.07 2.58 8.11 -2.39 -0.02 2.56 16 43 H 0.11 3.45 8.08 -2.38 -0.02 3.43 16 44 H 0.08 2.44 7.38 -2.39 -0.02 2.42 16 45 H 0.40 19.68 7.90 -92.70 -0.73 18.95 16 46 H 0.28 14.21 8.31 -92.70 -0.77 13.44 16 47 H 0.12 2.15 8.11 -2.39 -0.02 2.13 16 48 H 0.09 1.86 7.92 -2.39 -0.02 1.84 16 49 H 0.09 1.94 8.05 -2.39 -0.02 1.92 16 50 H 0.12 1.36 7.98 -2.38 -0.02 1.34 16 Total: -1.00 -78.20 410.39 -2.68 -80.88 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: -0.57 Total: 33.34 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 6.47 Total: 15.78 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -8.84 Total: -113.45 kcal Atomic # 8 Polarization: -60.43 SS G_CDS: -1.76 Total: -62.19 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -78.20 -2.68 -80.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570238528.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.090 kcal (2) G-P(sol) polarization free energy of solvation -78.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds