Wall clock time and date at job start Sat Apr 11 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.66988 * 2 1 4 4 O 1.21281 * 120.00187 * 112.13201 * 3 2 1 5 5 N 1.34786 * 119.99751 * 292.13726 * 3 2 1 6 6 C 1.46919 * 120.62656 * 185.54041 * 5 3 2 7 7 C 1.52760 * 109.00677 * 233.58261 * 6 5 3 8 8 C 1.53042 * 109.38317 * 305.58918 * 7 6 5 9 9 C 1.53035 * 109.53926 * 61.23838 * 8 7 6 10 10 C 1.53002 * 109.52919 * 178.66596 * 9 8 7 11 11 O 1.42897 * 109.47081 * 299.85928 * 10 9 8 12 12 N 1.46510 * 109.49472 * 58.58677 * 9 8 7 13 13 C 1.36935 * 119.99705 * 60.16131 * 12 9 8 14 14 H 1.08002 * 120.00015 * 0.02562 * 13 12 9 15 15 C 1.38812 * 119.99860 * 179.97438 * 13 12 9 16 16 N 1.31619 * 120.00054 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00047 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47381 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47088 * 120.00258 * 17 15 13 20 20 H 1.48501 * 109.47280 * 240.00200 * 17 15 13 21 21 C 1.46921 * 120.62928 * 5.81583 * 5 3 2 22 22 C 1.53346 * 109.70274 * 120.51656 * 2 1 3 23 23 C 1.53095 * 108.53014 * 52.06152 * 22 2 1 24 24 N 1.45755 * 110.38494 * 51.11314 * 23 22 2 25 25 C 1.33349 * 124.10781 * 340.46479 * 24 23 22 26 26 O 1.21285 * 118.24413 * 182.48023 * 25 24 23 27 27 C 1.50174 * 123.50935 * 2.50118 * 25 24 23 28 28 H 1.08998 * 109.47285 * 170.72732 * 1 2 3 29 29 H 1.09000 * 109.47047 * 290.72162 * 1 2 3 30 30 H 1.09003 * 109.47576 * 50.72249 * 1 2 3 31 31 H 1.09000 * 109.58921 * 353.41822 * 6 5 3 32 32 H 1.09005 * 109.58840 * 113.84320 * 6 5 3 33 33 H 1.09006 * 109.56172 * 185.55805 * 7 6 5 34 34 H 1.08994 * 109.36102 * 65.50080 * 7 6 5 35 35 H 1.09004 * 109.46067 * 301.22196 * 8 7 6 36 36 H 1.08999 * 109.46228 * 181.26204 * 8 7 6 37 37 H 1.09003 * 109.46712 * 59.85468 * 10 9 8 38 38 H 1.08996 * 109.47351 * 179.85359 * 10 9 8 39 39 H 0.96698 * 113.99964 * 179.97438 * 11 10 9 40 40 H 0.96998 * 119.99602 * 240.16335 * 12 9 8 41 41 H 0.96997 * 120.00207 * 179.97438 * 16 15 13 42 42 H 1.09001 * 109.58935 * 246.15569 * 21 5 3 43 43 H 1.09002 * 109.59227 * 6.58924 * 21 5 3 44 44 H 1.08997 * 109.59833 * 171.98134 * 22 2 1 45 45 H 1.09000 * 109.60181 * 292.29810 * 22 2 1 46 46 H 1.09003 * 109.49769 * 290.73912 * 23 22 2 47 47 H 1.09000 * 109.20592 * 171.30400 * 23 22 2 48 48 H 0.96999 * 117.94204 * 160.74238 * 24 23 22 49 49 H 1.08999 * 109.39995 * 102.54751 * 27 25 24 50 50 H 1.09000 * 109.39917 * 222.29049 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0373 1.4191 0.0000 4 8 2.6140 1.8570 0.9729 5 7 1.8499 2.2017 -1.0813 6 6 2.4424 3.5446 -1.1449 7 6 1.3434 4.5590 -1.4559 8 6 0.6067 4.1356 -2.7288 9 6 -0.0436 2.7673 -2.5127 10 6 -0.8077 2.3592 -3.7738 11 8 -1.8224 3.3267 -4.0500 12 7 -0.9713 2.8402 -1.3810 13 6 -2.0324 3.7049 -1.4202 14 1 -2.1856 4.3328 -2.2854 15 6 -2.9116 3.7736 -0.3482 16 7 -2.7252 3.0079 0.7060 17 14 -4.3595 4.9526 -0.4019 18 1 -4.3460 5.6949 -1.6880 19 1 -5.6263 4.1864 -0.2863 20 1 -4.2574 5.9135 0.7257 21 6 1.0443 1.7303 -2.2159 22 6 2.0470 -0.7331 1.2437 23 6 1.3708 -2.1047 1.3162 24 7 1.5043 -2.8044 0.0445 25 6 1.7816 -2.2043 -1.1136 26 8 1.8234 -2.8845 -2.1169 27 6 2.0453 -0.7315 -1.2419 28 1 -0.3634 -1.0142 -0.1656 29 1 -0.3633 0.3636 0.9612 30 1 -0.3634 0.6506 -0.7955 31 1 2.9012 3.7874 -0.1865 32 1 3.1965 3.5744 -1.9314 33 1 1.7867 5.5440 -1.6028 34 1 0.6402 4.5964 -0.6240 35 1 1.3151 4.0744 -3.5551 36 1 -0.1631 4.8704 -2.9644 37 1 -0.1173 2.3062 -4.6157 38 1 -1.2684 1.3834 -3.6198 39 1 -2.3475 3.1319 -4.8382 40 1 -0.8338 2.2759 -0.6041 41 1 -3.3394 3.0562 1.4552 42 1 1.6821 1.6092 -3.0916 43 1 0.5809 0.7765 -1.9639 44 1 3.1275 -0.8572 1.1722 45 1 1.8035 -0.1561 2.1359 46 1 0.3134 -1.9772 1.5481 47 1 1.8404 -2.6948 2.1031 48 1 1.3797 -3.7663 0.0398 49 1 3.1175 -0.5631 -1.3425 50 1 1.5353 -0.3480 -2.1257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570285197.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:07 Heat of formation + Delta-G solvation = -82.931552 kcal Electronic energy + Delta-G solvation = -33397.902915 eV Core-core repulsion = 29233.230042 eV Total energy + Delta-G solvation = -4164.672873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.36029 -39.66223 -38.09817 -36.62555 -35.72439 -34.23948 -33.76410 -31.95883 -31.41077 -29.68635 -28.73900 -27.80735 -25.87294 -25.45369 -24.13315 -23.54715 -22.96252 -21.29466 -19.57720 -18.57079 -18.40823 -17.49926 -17.41458 -16.67460 -16.48924 -15.94043 -15.70981 -15.23275 -15.10773 -14.82816 -14.59563 -14.16650 -13.98416 -13.84442 -13.81578 -13.43126 -13.25442 -13.09123 -12.79219 -12.47742 -12.16135 -12.11553 -11.95969 -11.76617 -11.62806 -11.50326 -11.27516 -10.92535 -10.85844 -10.78352 -10.69746 -10.30931 -10.27293 -10.16742 -10.04075 -9.87672 -9.58353 -9.24144 -9.17465 -8.98722 -8.81281 -8.28553 -6.92885 -5.67426 -2.94241 2.56592 2.82628 3.18761 3.20153 3.48290 3.55555 3.57557 4.28643 4.46151 4.57758 4.63768 4.67091 4.77057 4.92888 5.09060 5.11111 5.20980 5.32652 5.41836 5.45860 5.50089 5.52528 5.56189 5.58448 5.74549 5.75203 5.79529 5.83183 5.89347 5.93174 5.94278 6.00569 6.09388 6.11523 6.15732 6.42351 6.47497 6.61697 6.63892 6.65578 6.85823 6.99638 7.11529 7.20958 7.64726 8.06222 8.11968 8.30182 8.40324 8.51536 9.63919 10.12587 10.48877 11.55703 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.004642 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.969842 B = 6030.476203 C = 6389.252660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.080 4.080 3 C 0.534 3.466 4 O -0.541 6.541 5 N -0.593 5.593 6 C 0.115 3.885 7 C -0.129 4.129 8 C -0.116 4.116 9 C 0.186 3.814 10 C 0.074 3.926 11 O -0.538 6.538 12 N -0.708 5.708 13 C -0.209 4.209 14 H 0.094 0.906 15 C -0.023 4.023 16 N -0.940 5.940 17 Si 0.903 3.097 18 H -0.281 1.281 19 H -0.297 1.297 20 H -0.297 1.297 21 C 0.085 3.915 22 C -0.111 4.111 23 C 0.108 3.892 24 N -0.718 5.718 25 C 0.528 3.472 26 O -0.560 6.560 27 C -0.140 4.140 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.026 0.974 38 H 0.037 0.963 39 H 0.354 0.646 40 H 0.384 0.616 41 H 0.250 0.750 42 H 0.071 0.929 43 H 0.105 0.895 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.398 0.602 49 H 0.103 0.897 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.405 -7.943 -3.957 13.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.084 4.084 3 C 0.321 3.679 4 O -0.418 6.418 5 N -0.324 5.324 6 C -0.007 4.007 7 C -0.167 4.167 8 C -0.156 4.156 9 C 0.092 3.908 10 C -0.007 4.007 11 O -0.340 6.340 12 N -0.351 5.351 13 C -0.340 4.340 14 H 0.111 0.889 15 C -0.217 4.217 16 N -0.590 5.590 17 Si 0.735 3.265 18 H -0.206 1.206 19 H -0.224 1.224 20 H -0.225 1.225 21 C -0.038 4.038 22 C -0.149 4.149 23 C -0.016 4.016 24 N -0.370 5.370 25 C 0.315 3.685 26 O -0.439 6.439 27 C -0.180 4.180 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.199 0.801 40 H 0.221 0.779 41 H 0.060 0.940 42 H 0.089 0.911 43 H 0.123 0.877 44 H 0.093 0.907 45 H 0.117 0.883 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.233 0.767 49 H 0.121 0.879 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.900 -7.386 -3.417 13.603 hybrid contribution -1.233 -0.092 -0.182 1.250 sum 9.667 -7.478 -3.600 12.741 Atomic orbital electron populations 1.22351 0.90390 1.03197 1.06021 1.20887 0.98786 0.92583 0.96124 1.20160 0.78784 0.86912 0.82005 1.90656 1.43427 1.74968 1.32796 1.47779 1.50801 1.16210 1.17659 1.21529 0.95441 0.81543 1.02185 1.21733 0.97738 0.96594 1.00638 1.21852 0.98770 0.99404 0.95583 1.19985 0.88784 0.93126 0.88872 1.22706 0.89775 0.91718 0.96504 1.86844 1.49373 1.49221 1.48578 1.42592 1.28096 1.48059 1.16306 1.19608 1.00227 1.13524 1.00645 0.88875 1.24717 0.99604 1.00394 0.96972 1.69654 1.39220 1.42838 1.07318 0.86155 0.82886 0.80499 0.76917 1.20636 1.22432 1.22459 1.22519 0.93081 0.99147 0.89103 1.21772 1.00508 0.94196 0.98405 1.21524 1.01779 0.93521 0.84822 1.45472 1.71846 1.11643 1.08017 1.19958 0.75432 0.90373 0.82692 1.90756 1.52644 1.65152 1.35383 1.22203 1.04419 0.91432 0.99900 0.91756 0.90046 0.89117 0.89545 0.92343 0.92233 0.89380 0.94007 0.90573 0.95627 0.94427 0.80096 0.77872 0.94011 0.91062 0.87737 0.90685 0.88271 0.90625 0.90253 0.76662 0.87892 0.86459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 6.75 37.16 0.25 -2.20 16 2 C -0.08 -1.07 0.49 -155.44 -0.08 -1.15 16 3 C 0.53 8.72 6.46 -10.98 -0.07 8.65 16 4 O -0.54 -10.35 15.27 5.56 0.08 -10.27 16 5 N -0.59 -9.23 2.86 -173.03 -0.49 -9.72 16 6 C 0.12 1.76 6.41 -3.94 -0.03 1.73 16 7 C -0.13 -2.18 5.91 -26.83 -0.16 -2.34 16 8 C -0.12 -1.97 4.39 -26.69 -0.12 -2.09 16 9 C 0.19 3.25 0.68 -131.69 -0.09 3.16 16 10 C 0.07 1.19 6.08 37.16 0.23 1.42 16 11 O -0.54 -9.47 9.96 -35.23 -0.35 -9.82 16 12 N -0.71 -15.80 3.96 -47.11 -0.19 -15.99 16 13 C -0.21 -5.40 8.29 -15.06 -0.12 -5.52 16 14 H 0.09 2.44 5.30 -52.49 -0.28 2.16 16 15 C -0.02 -0.63 5.50 -17.43 -0.10 -0.72 16 16 N -0.94 -27.24 13.06 55.49 0.72 -26.52 16 17 Si 0.90 22.45 29.55 -169.99 -5.02 17.42 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 20 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 21 C 0.08 1.23 3.06 -3.71 -0.01 1.22 16 22 C -0.11 -1.26 4.44 -26.50 -0.12 -1.38 16 23 C 0.11 0.96 6.41 -4.39 -0.03 0.94 16 24 N -0.72 -7.31 5.25 -61.30 -0.32 -7.64 16 25 C 0.53 6.86 7.02 -11.87 -0.08 6.78 16 26 O -0.56 -9.20 17.78 5.55 0.10 -9.10 16 27 C -0.14 -1.70 4.24 -28.10 -0.12 -1.82 16 28 H 0.06 0.87 6.24 -51.93 -0.32 0.55 16 29 H 0.08 1.39 8.13 -51.93 -0.42 0.97 16 30 H 0.09 1.57 2.97 -51.93 -0.15 1.42 16 31 H 0.09 1.41 7.00 -51.93 -0.36 1.05 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.88 7.53 -51.93 -0.39 1.49 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.49 6.84 -51.93 -0.36 1.13 16 37 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.35 4.56 9.12 45.56 0.42 4.97 16 40 H 0.38 9.08 5.20 -40.82 -0.21 8.87 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.11 1.50 2.51 -51.93 -0.13 1.37 16 44 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 45 H 0.10 1.23 7.77 -51.93 -0.40 0.83 16 46 H 0.08 0.69 7.05 -51.93 -0.37 0.32 16 47 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.40 3.49 8.80 -40.82 -0.36 3.13 16 49 H 0.10 1.15 8.09 -51.93 -0.42 0.73 16 50 H 0.12 1.42 4.79 -51.93 -0.25 1.17 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -34.00 365.90 -7.13 -41.12 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -6.53 Total: 18.33 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -0.64 Total: 6.66 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: -0.28 Total: -59.86 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.17 Total: -29.19 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.00 -7.13 -41.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570285197.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.808 kcal (2) G-P(sol) polarization free energy of solvation -33.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds