Wall clock time and date at job start Sat Apr 11 2020 05:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.66988 * 2 1 4 4 O 1.21281 * 120.00187 * 112.13201 * 3 2 1 5 5 N 1.34786 * 119.99751 * 292.13726 * 3 2 1 6 6 C 1.46919 * 120.62656 * 185.54041 * 5 3 2 7 7 C 1.52760 * 109.00677 * 233.58261 * 6 5 3 8 8 C 1.53042 * 109.38317 * 305.58918 * 7 6 5 9 9 C 1.53035 * 109.53926 * 61.23838 * 8 7 6 10 10 C 1.53002 * 109.52919 * 178.66596 * 9 8 7 11 11 O 1.42897 * 109.47081 * 299.85928 * 10 9 8 12 12 N 1.46510 * 109.49472 * 58.58677 * 9 8 7 13 13 C 1.36935 * 119.99705 * 60.16131 * 12 9 8 14 14 H 1.08002 * 120.00015 * 0.02562 * 13 12 9 15 15 C 1.38812 * 119.99860 * 179.97438 * 13 12 9 16 16 N 1.31619 * 120.00054 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00047 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47381 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47088 * 120.00258 * 17 15 13 20 20 H 1.48501 * 109.47280 * 240.00200 * 17 15 13 21 21 C 1.46921 * 120.62928 * 5.81583 * 5 3 2 22 22 C 1.53346 * 109.70274 * 120.51656 * 2 1 3 23 23 C 1.53095 * 108.53014 * 52.06152 * 22 2 1 24 24 N 1.45755 * 110.38494 * 51.11314 * 23 22 2 25 25 C 1.33349 * 124.10781 * 340.46479 * 24 23 22 26 26 O 1.21285 * 118.24413 * 182.48023 * 25 24 23 27 27 C 1.50174 * 123.50935 * 2.50118 * 25 24 23 28 28 H 1.08998 * 109.47285 * 170.72732 * 1 2 3 29 29 H 1.09000 * 109.47047 * 290.72162 * 1 2 3 30 30 H 1.09003 * 109.47576 * 50.72249 * 1 2 3 31 31 H 1.09000 * 109.58921 * 353.41822 * 6 5 3 32 32 H 1.09005 * 109.58840 * 113.84320 * 6 5 3 33 33 H 1.09006 * 109.56172 * 185.55805 * 7 6 5 34 34 H 1.08994 * 109.36102 * 65.50080 * 7 6 5 35 35 H 1.09004 * 109.46067 * 301.22196 * 8 7 6 36 36 H 1.08999 * 109.46228 * 181.26204 * 8 7 6 37 37 H 1.09003 * 109.46712 * 59.85468 * 10 9 8 38 38 H 1.08996 * 109.47351 * 179.85359 * 10 9 8 39 39 H 0.96698 * 113.99964 * 179.97438 * 11 10 9 40 40 H 0.96998 * 119.99602 * 240.16335 * 12 9 8 41 41 H 0.96997 * 120.00207 * 179.97438 * 16 15 13 42 42 H 1.09001 * 109.58935 * 246.15569 * 21 5 3 43 43 H 1.09002 * 109.59227 * 6.58924 * 21 5 3 44 44 H 1.08997 * 109.59833 * 171.98134 * 22 2 1 45 45 H 1.09000 * 109.60181 * 292.29810 * 22 2 1 46 46 H 1.09003 * 109.49769 * 290.73912 * 23 22 2 47 47 H 1.09000 * 109.20592 * 171.30400 * 23 22 2 48 48 H 0.96999 * 117.94204 * 160.74238 * 24 23 22 49 49 H 1.08999 * 109.39995 * 102.54751 * 27 25 24 50 50 H 1.09000 * 109.39917 * 222.29049 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0373 1.4191 0.0000 4 8 2.6140 1.8570 0.9729 5 7 1.8499 2.2017 -1.0813 6 6 2.4424 3.5446 -1.1449 7 6 1.3434 4.5590 -1.4559 8 6 0.6067 4.1356 -2.7288 9 6 -0.0436 2.7673 -2.5127 10 6 -0.8077 2.3592 -3.7738 11 8 -1.8224 3.3267 -4.0500 12 7 -0.9713 2.8402 -1.3810 13 6 -2.0324 3.7049 -1.4202 14 1 -2.1856 4.3328 -2.2854 15 6 -2.9116 3.7736 -0.3482 16 7 -2.7252 3.0079 0.7060 17 14 -4.3595 4.9526 -0.4019 18 1 -4.3460 5.6949 -1.6880 19 1 -5.6263 4.1864 -0.2863 20 1 -4.2574 5.9135 0.7257 21 6 1.0443 1.7303 -2.2159 22 6 2.0470 -0.7331 1.2437 23 6 1.3708 -2.1047 1.3162 24 7 1.5043 -2.8044 0.0445 25 6 1.7816 -2.2043 -1.1136 26 8 1.8234 -2.8845 -2.1169 27 6 2.0453 -0.7315 -1.2419 28 1 -0.3634 -1.0142 -0.1656 29 1 -0.3633 0.3636 0.9612 30 1 -0.3634 0.6506 -0.7955 31 1 2.9012 3.7874 -0.1865 32 1 3.1965 3.5744 -1.9314 33 1 1.7867 5.5440 -1.6028 34 1 0.6402 4.5964 -0.6240 35 1 1.3151 4.0744 -3.5551 36 1 -0.1631 4.8704 -2.9644 37 1 -0.1173 2.3062 -4.6157 38 1 -1.2684 1.3834 -3.6198 39 1 -2.3475 3.1319 -4.8382 40 1 -0.8338 2.2759 -0.6041 41 1 -3.3394 3.0562 1.4552 42 1 1.6821 1.6092 -3.0916 43 1 0.5809 0.7765 -1.9639 44 1 3.1275 -0.8572 1.1722 45 1 1.8035 -0.1561 2.1359 46 1 0.3134 -1.9772 1.5481 47 1 1.8404 -2.6948 2.1031 48 1 1.3797 -3.7663 0.0398 49 1 3.1175 -0.5631 -1.3425 50 1 1.5353 -0.3480 -2.1257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570285197.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:06 Heat of formation + Delta-G solvation = -110.626087 kcal Electronic energy + Delta-G solvation = -33399.103840 eV Core-core repulsion = 29233.230042 eV Total energy + Delta-G solvation = -4165.873798 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.49063 -40.80788 -39.44172 -37.73131 -37.04475 -35.46932 -35.25666 -33.54606 -32.77294 -30.70728 -30.40976 -28.94273 -27.13215 -26.69952 -25.56159 -25.05631 -24.11603 -22.51789 -20.87013 -19.79490 -19.54066 -19.14878 -18.53818 -17.99963 -17.71375 -17.03856 -16.82128 -16.65773 -16.33748 -16.05434 -15.82975 -15.66013 -15.49586 -15.19081 -15.10320 -14.67630 -14.52935 -14.40543 -14.01933 -13.74805 -13.51231 -13.43096 -13.29048 -12.98193 -12.86547 -12.75737 -12.69936 -12.57315 -12.38290 -12.04161 -11.99517 -11.92767 -11.71322 -11.65812 -11.39921 -11.30839 -11.12879 -10.72347 -10.51707 -10.37688 -10.05535 -9.55705 -8.82416 -7.76414 -4.98910 1.47017 1.49744 1.53293 1.57900 1.59258 2.00710 2.32842 2.66856 3.19687 3.41228 3.47197 3.60447 3.68754 3.73121 3.74262 3.93025 4.07022 4.09837 4.15595 4.25426 4.37984 4.39296 4.41992 4.51264 4.52945 4.59089 4.59773 4.66538 4.67155 4.75758 4.82995 4.86694 4.90962 5.02214 5.06737 5.08755 5.13729 5.27270 5.34906 5.56266 5.57913 5.69364 5.83887 5.97454 6.29763 6.40085 6.48890 7.13254 7.19027 7.21251 7.56650 8.27064 8.50928 9.47506 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.004642 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.969842 B = 6030.476203 C = 6389.252660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.071 4.071 3 C 0.526 3.474 4 O -0.576 6.576 5 N -0.594 5.594 6 C 0.117 3.883 7 C -0.123 4.123 8 C -0.110 4.110 9 C 0.171 3.829 10 C 0.075 3.925 11 O -0.568 6.568 12 N -0.717 5.717 13 C -0.177 4.177 14 H 0.092 0.908 15 C -0.091 4.091 16 N -0.974 5.974 17 Si 0.952 3.048 18 H -0.271 1.271 19 H -0.304 1.304 20 H -0.309 1.309 21 C 0.087 3.913 22 C -0.110 4.110 23 C 0.111 3.889 24 N -0.706 5.706 25 C 0.528 3.472 26 O -0.597 6.597 27 C -0.133 4.133 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.032 0.968 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.033 0.967 39 H 0.376 0.624 40 H 0.376 0.624 41 H 0.239 0.761 42 H 0.114 0.886 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.114 0.886 48 H 0.408 0.592 49 H 0.118 0.882 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.181 -9.057 -6.117 16.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.075 4.075 3 C 0.314 3.686 4 O -0.456 6.456 5 N -0.324 5.324 6 C -0.005 4.005 7 C -0.161 4.161 8 C -0.149 4.149 9 C 0.080 3.920 10 C -0.005 4.005 11 O -0.374 6.374 12 N -0.359 5.359 13 C -0.310 4.310 14 H 0.110 0.890 15 C -0.281 4.281 16 N -0.628 5.628 17 Si 0.785 3.215 18 H -0.196 1.196 19 H -0.232 1.232 20 H -0.238 1.238 21 C -0.036 4.036 22 C -0.148 4.148 23 C -0.012 4.012 24 N -0.357 5.357 25 C 0.315 3.685 26 O -0.479 6.479 27 C -0.172 4.172 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.224 0.776 40 H 0.211 0.789 41 H 0.048 0.952 42 H 0.132 0.868 43 H 0.124 0.876 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.132 0.868 48 H 0.245 0.755 49 H 0.136 0.864 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.680 -8.498 -5.638 16.272 hybrid contribution -1.725 0.312 0.415 1.801 sum 10.955 -8.186 -5.223 14.639 Atomic orbital electron populations 1.22201 0.91778 1.03304 1.03601 1.20811 0.97252 0.91320 0.98066 1.20689 0.78270 0.88043 0.81552 1.90636 1.45126 1.75876 1.33943 1.47898 1.50483 1.16238 1.17829 1.21563 0.95366 0.80895 1.02711 1.21634 0.97264 0.98536 0.98703 1.21770 0.98661 0.97909 0.96594 1.20417 0.89042 0.94586 0.87989 1.22637 0.90164 0.90883 0.96861 1.86737 1.50312 1.50047 1.50265 1.42754 1.28253 1.47139 1.17717 1.19819 0.99821 1.11945 0.99393 0.89029 1.25286 1.02379 1.02777 0.97646 1.69788 1.40088 1.45080 1.07886 0.85336 0.80667 0.78879 0.76591 1.19614 1.23213 1.23779 1.22643 0.92753 0.98031 0.90123 1.21771 1.01207 0.95065 0.96777 1.21606 1.01959 0.92601 0.85030 1.45420 1.70344 1.12264 1.07674 1.20028 0.75197 0.90424 0.82811 1.90747 1.54674 1.65822 1.36682 1.22154 1.05314 0.90780 0.98987 0.90275 0.92865 0.91053 0.91184 0.88403 0.90284 0.94864 0.90119 0.93494 0.91376 0.94843 0.77637 0.78869 0.95209 0.86822 0.87562 0.89816 0.89734 0.90580 0.86799 0.75524 0.86392 0.86071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.58 6.75 71.98 0.49 -4.10 16 2 C -0.07 -1.83 0.49 -52.79 -0.03 -1.85 16 3 C 0.53 16.86 6.46 87.66 0.57 17.43 16 4 O -0.58 -22.24 15.27 -3.03 -0.05 -22.28 16 5 N -0.59 -17.52 2.86 -819.73 -2.34 -19.86 16 6 C 0.12 3.34 6.41 86.22 0.55 3.89 16 7 C -0.12 -4.04 5.91 30.53 0.18 -3.86 16 8 C -0.11 -3.47 4.39 30.62 0.13 -3.34 16 9 C 0.17 5.64 0.68 3.68 0.00 5.64 16 10 C 0.07 2.18 6.08 71.98 0.44 2.62 16 11 O -0.57 -18.82 9.96 -148.98 -1.48 -20.30 16 12 N -0.72 -32.20 3.96 -302.97 -1.20 -33.40 16 13 C -0.18 -9.27 8.29 84.03 0.70 -8.57 16 14 H 0.09 4.80 5.30 -2.91 -0.02 4.79 16 15 C -0.09 -5.16 5.50 84.86 0.47 -4.69 16 16 N -0.97 -58.82 13.06 21.65 0.28 -58.53 16 17 Si 0.95 47.57 29.55 68.60 2.03 49.60 16 18 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 19 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 20 H -0.31 -15.87 7.11 99.48 0.71 -15.16 16 21 C 0.09 2.28 3.06 86.36 0.26 2.54 16 22 C -0.11 -2.37 4.44 30.74 0.14 -2.23 16 23 C 0.11 1.74 6.41 86.55 0.55 2.30 16 24 N -0.71 -12.64 5.25 -467.02 -2.45 -15.10 16 25 C 0.53 12.51 7.02 87.71 0.62 13.13 16 26 O -0.60 -18.43 17.78 -3.05 -0.05 -18.48 16 27 C -0.13 -2.91 4.24 29.71 0.13 -2.78 16 28 H 0.08 2.09 6.24 -2.39 -0.01 2.08 16 29 H 0.05 1.89 8.13 -2.39 -0.02 1.87 16 30 H 0.07 2.47 2.97 -2.39 -0.01 2.47 16 31 H 0.07 2.26 7.00 -2.39 -0.02 2.24 16 32 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 33 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.03 1.45 7.53 -2.39 -0.02 1.43 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.05 1.76 6.84 -2.39 -0.02 1.75 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.38 8.78 9.12 -74.06 -0.68 8.10 16 40 H 0.38 18.20 5.20 -92.71 -0.48 17.72 16 41 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 42 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.11 2.82 2.51 -2.39 -0.01 2.81 16 44 H 0.08 1.67 8.12 -2.39 -0.02 1.65 16 45 H 0.08 2.10 7.77 -2.39 -0.02 2.09 16 46 H 0.08 1.25 7.05 -2.39 -0.02 1.23 16 47 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.41 6.08 8.80 -92.71 -0.82 5.26 16 49 H 0.12 2.27 8.09 -2.39 -0.02 2.25 16 50 H 0.12 2.57 4.79 -2.39 -0.01 2.56 16 Total: -1.00 -77.50 365.90 -1.03 -78.53 By element: Atomic # 1 Polarization: 44.68 SS G_CDS: -0.96 Total: 43.72 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 5.19 Total: 16.11 kcal Atomic # 7 Polarization: -121.18 SS G_CDS: -5.71 Total: -126.89 kcal Atomic # 8 Polarization: -59.48 SS G_CDS: -1.58 Total: -61.07 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -77.50 -1.03 -78.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570285197.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.095 kcal (2) G-P(sol) polarization free energy of solvation -77.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds