Wall clock time and date at job start Sat Apr 11 2020 05:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47014 * 2 1 4 4 C 1.32994 * 120.00005 * 175.39475 * 3 2 1 5 5 C 1.50699 * 119.99850 * 183.05214 * 4 3 2 6 6 C 1.47098 * 120.00072 * 3.05492 * 4 3 2 7 7 O 1.21615 * 119.99648 * 5.30184 * 6 4 3 8 8 N 1.34776 * 119.99850 * 185.30675 * 6 4 3 9 9 C 1.46500 * 119.99383 * 184.65176 * 8 6 4 10 10 C 1.53001 * 112.94194 * 59.66602 * 9 8 6 11 11 C 1.53000 * 109.47378 * 59.01312 * 10 9 8 12 12 O 1.42893 * 109.47001 * 175.20214 * 11 10 9 13 13 C 1.53931 * 113.73612 * 288.08932 * 9 8 6 14 14 N 1.48297 * 86.06638 * 269.31370 * 13 9 8 15 15 C 1.46903 * 111.00630 * 222.41808 * 14 13 9 16 16 C 1.50697 * 109.47153 * 269.35214 * 15 14 13 17 17 O 1.21290 * 119.99913 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00456 * 180.02562 * 16 15 14 19 19 C 1.37093 * 120.00571 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99822 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00144 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00331 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99941 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46991 * 60.00065 * 23 21 19 25 25 H 1.48505 * 109.47086 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47453 * 299.99784 * 23 21 19 27 27 C 1.47958 * 90.75435 * 335.30922 * 14 13 9 28 28 H 1.08995 * 109.47721 * 299.99948 * 1 2 3 29 29 H 1.08998 * 109.46968 * 60.00383 * 1 2 3 30 30 H 1.09000 * 109.47158 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46994 * 239.99912 * 2 1 3 32 32 H 1.08997 * 109.46815 * 120.00148 * 2 1 3 33 33 H 1.07999 * 119.99919 * 355.40362 * 3 2 1 34 34 H 1.09005 * 109.47275 * 270.00090 * 5 4 3 35 35 H 1.08999 * 109.47799 * 30.00090 * 5 4 3 36 36 H 1.09001 * 109.47279 * 150.00591 * 5 4 3 37 37 H 0.96998 * 120.00444 * 4.92300 * 8 6 4 38 38 H 1.09001 * 109.46766 * 179.01512 * 10 9 8 39 39 H 1.09006 * 109.46663 * 299.01397 * 10 9 8 40 40 H 1.09008 * 109.46794 * 295.20419 * 11 10 9 41 41 H 1.08998 * 109.46770 * 55.19836 * 11 10 9 42 42 H 0.96699 * 113.99764 * 179.97438 * 12 11 10 43 43 H 1.09008 * 113.75759 * 23.68539 * 13 9 8 44 44 H 1.08997 * 113.76045 * 155.04556 * 13 9 8 45 45 H 1.09000 * 109.46979 * 29.34928 * 15 14 13 46 46 H 1.09000 * 109.47225 * 149.35166 * 15 14 13 47 47 H 0.97009 * 119.99481 * 359.97438 * 18 16 15 48 48 H 0.96999 * 120.00236 * 179.97438 * 22 21 19 49 49 H 1.09004 * 113.75827 * 270.37079 * 27 14 13 50 50 H 1.08994 * 113.76403 * 139.00648 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 3.3364 1.6651 0.0925 5 6 3.8337 3.0860 0.1618 6 6 4.2932 0.5484 0.1270 7 8 3.9016 -0.5928 -0.0258 8 7 5.6038 0.7900 0.3281 9 6 6.5699 -0.3094 0.2611 10 6 6.5807 -1.0119 -1.0980 11 6 6.9217 0.0009 -2.1930 12 8 7.0417 -0.6749 -3.4462 13 6 6.4933 -1.2752 1.4573 14 7 7.5001 -0.3966 2.1003 15 6 8.5336 -1.1894 2.7797 16 6 8.1212 -1.4333 4.2085 17 8 7.0701 -0.9899 4.6204 18 7 8.9209 -2.1431 5.0289 19 6 8.5455 -2.3655 6.3286 20 1 7.6092 -1.9714 6.6952 21 6 9.3702 -3.0969 7.1745 22 7 10.5098 -3.5760 6.7286 23 14 8.8591 -3.3993 8.9456 24 1 7.5725 -4.1404 8.9698 25 1 9.9041 -4.2001 9.6326 26 1 8.6941 -2.0983 9.6422 27 6 7.9714 0.0654 0.7760 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3333 2.2407 -0.0750 34 1 4.0214 3.4549 -0.8466 35 1 3.0818 3.7111 0.6433 36 1 4.7579 3.1197 0.7388 37 1 5.9070 1.6909 0.5210 38 1 7.3283 -1.8050 -1.0910 39 1 5.5977 -1.4407 -1.2931 40 1 6.1298 0.7473 -2.2569 41 1 7.8649 0.4916 -1.9529 42 1 7.2569 -0.0929 -4.1879 43 1 5.5254 -1.2773 1.9588 44 1 6.8614 -2.2772 1.2369 45 1 8.6538 -2.1443 2.2682 46 1 9.4784 -0.6462 2.7619 47 1 9.7617 -2.4974 4.6995 48 1 11.0857 -4.0863 7.3193 49 1 8.7710 -0.5453 0.3569 50 1 8.1837 1.1336 0.7336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570756795.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:23 Heat of formation + Delta-G solvation = -103.983460 kcal Electronic energy + Delta-G solvation = -30256.997705 eV Core-core repulsion = 26091.411953 eV Total energy + Delta-G solvation = -4165.585752 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.11144 -40.41648 -39.56271 -37.79101 -36.39590 -35.97516 -35.30282 -33.53158 -33.23692 -32.01696 -30.31879 -27.77894 -27.45904 -27.08752 -25.43569 -24.35009 -22.97767 -22.75408 -21.00501 -20.42446 -20.22657 -19.88721 -18.40357 -17.83892 -17.45480 -17.08955 -16.74995 -16.53044 -16.36650 -16.17723 -15.84171 -15.50954 -15.45129 -15.11786 -14.88156 -14.70125 -14.61148 -14.33064 -13.88545 -13.76072 -13.61761 -13.56541 -13.41930 -13.33935 -13.02611 -12.94920 -12.61975 -12.55426 -12.45979 -12.41576 -12.20650 -12.14553 -12.04299 -11.94749 -11.61742 -11.51384 -10.90233 -10.49208 -10.39143 -10.19106 -10.02424 -9.82581 -9.62330 -8.48022 -5.96794 0.46806 1.37690 1.39039 1.50157 2.05277 2.13387 2.26682 2.30002 2.72677 3.02372 3.18337 3.27084 3.42581 3.74783 3.87185 3.89771 4.07707 4.17919 4.25670 4.27658 4.31464 4.36238 4.38802 4.41736 4.46388 4.50805 4.55284 4.62042 4.66389 4.70870 4.79330 4.82003 4.87147 4.94984 5.10000 5.14945 5.18722 5.21118 5.31836 5.35104 5.38675 5.47151 5.61195 5.70097 5.83143 6.04301 6.59855 6.62446 6.91631 7.11987 7.31587 7.55581 8.12861 8.69283 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011578 B = 0.002656 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.805375 B =10541.258038 C =12056.874164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.064 4.064 4 C -0.206 4.206 5 C -0.108 4.108 6 C 0.542 3.458 7 O -0.567 6.567 8 N -0.691 5.691 9 C 0.168 3.832 10 C -0.116 4.116 11 C 0.089 3.911 12 O -0.596 6.596 13 C 0.008 3.992 14 N -0.472 5.472 15 C 0.021 3.979 16 C 0.441 3.559 17 O -0.621 6.621 18 N -0.575 5.575 19 C -0.335 4.335 20 H 0.074 0.926 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.274 1.274 25 H -0.268 1.268 26 H -0.271 1.271 27 C 0.013 3.987 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.156 0.844 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.414 0.586 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.045 0.955 41 H 0.071 0.929 42 H 0.398 0.602 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.118 0.882 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.109 0.891 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.822 13.813 -21.899 27.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.084 4.084 4 C -0.209 4.209 5 C -0.165 4.165 6 C 0.333 3.667 7 O -0.447 6.447 8 N -0.344 5.344 9 C 0.080 3.920 10 C -0.155 4.155 11 C 0.012 3.988 12 O -0.404 6.404 13 C -0.123 4.123 14 N -0.194 5.194 15 C -0.110 4.110 16 C 0.228 3.772 17 O -0.507 6.507 18 N -0.213 5.213 19 C -0.464 4.464 20 H 0.093 0.907 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.192 1.192 26 H -0.196 1.196 27 C -0.115 4.115 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.173 0.827 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.253 0.747 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.248 0.752 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.136 0.864 47 H 0.230 0.770 48 H 0.088 0.912 49 H 0.127 0.873 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.931 13.173 -20.760 26.158 hybrid contribution 0.756 -0.665 0.458 1.106 sum -8.175 12.508 -20.301 25.207 Atomic orbital electron populations 1.21858 0.94259 1.02048 1.02551 1.20689 0.96190 0.94260 1.01954 1.23945 0.95004 0.98757 0.90655 1.21676 0.94121 0.95945 1.09182 1.20793 1.02188 0.90066 1.03433 1.18932 0.82757 0.89234 0.75762 1.90771 1.78717 1.24421 1.50837 1.45463 1.05749 1.11258 1.71891 1.21414 0.89916 0.87948 0.92720 1.21669 1.02995 0.98809 0.92055 1.21991 1.00428 0.93439 0.82988 1.86435 1.94334 1.40678 1.18997 1.24305 0.97423 0.96199 0.94325 1.68447 1.08680 1.26792 1.15513 1.22394 0.97424 0.99343 0.91857 1.20859 0.85323 0.82027 0.88995 1.90494 1.26709 1.55344 1.78145 1.41935 1.20917 1.48090 1.10400 1.19587 1.05866 1.33211 0.87776 0.90748 1.26011 0.95207 0.95911 1.04028 1.69658 1.11480 1.36398 1.38565 0.85020 0.78010 0.78520 0.76972 1.19964 1.19192 1.19639 1.24516 0.94619 1.04643 0.87727 0.92125 0.91184 0.92938 0.91178 0.92890 0.82691 0.89493 0.89920 0.91382 0.74703 0.89964 0.92228 0.93715 0.91112 0.75219 0.92978 0.90477 0.90259 0.86443 0.76971 0.91249 0.87345 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.85 71.98 0.71 -1.80 16 2 C -0.09 -2.14 4.50 29.85 0.13 -2.00 16 3 C -0.06 -1.17 9.25 24.52 0.23 -0.95 16 4 C -0.21 -4.01 6.00 -18.70 -0.11 -4.12 16 5 C -0.11 -1.26 9.75 71.24 0.69 -0.57 16 6 C 0.54 14.11 7.29 86.57 0.63 14.74 16 7 O -0.57 -18.83 11.18 -4.08 -0.05 -18.88 16 8 N -0.69 -15.18 4.76 -429.91 -2.05 -17.22 16 9 C 0.17 3.95 0.60 5.17 0.00 3.95 16 10 C -0.12 -2.61 4.80 30.59 0.15 -2.46 16 11 C 0.09 1.47 6.81 71.98 0.49 1.96 16 12 O -0.60 -10.66 13.66 -148.98 -2.03 -12.69 16 13 C 0.01 0.25 6.96 86.34 0.60 0.85 16 14 N -0.47 -15.12 5.66 -910.82 -5.15 -20.27 16 15 C 0.02 0.74 5.28 85.56 0.45 1.19 16 16 C 0.44 21.87 7.83 87.66 0.69 22.56 16 17 O -0.62 -36.57 16.01 -3.06 -0.05 -36.62 16 18 N -0.58 -30.46 5.29 -306.99 -1.62 -32.08 16 19 C -0.33 -19.64 9.68 84.04 0.81 -18.83 16 20 H 0.07 4.68 7.16 -2.91 -0.02 4.66 16 21 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 22 N -0.92 -50.46 13.05 21.66 0.28 -50.18 16 23 Si 0.99 44.02 29.55 68.60 2.03 46.05 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 C 0.01 0.26 6.79 86.41 0.59 0.85 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.83 7.20 -2.39 -0.02 1.82 16 32 H 0.05 1.56 7.27 -2.39 -0.02 1.54 16 33 H 0.16 1.77 7.99 -2.91 -0.02 1.75 16 34 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.08 0.78 8.07 -2.39 -0.02 0.76 16 36 H 0.07 0.77 6.47 -2.39 -0.02 0.75 16 37 H 0.41 6.95 6.65 -92.71 -0.62 6.33 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.06 1.74 6.63 -2.38 -0.02 1.72 16 40 H 0.04 0.72 7.91 -2.38 -0.02 0.70 16 41 H 0.07 0.81 7.76 -2.39 -0.02 0.79 16 42 H 0.40 3.07 9.12 -74.06 -0.68 2.40 16 43 H 0.05 2.17 7.86 -2.38 -0.02 2.15 16 44 H 0.08 2.44 7.44 -2.39 -0.02 2.43 16 45 H 0.08 2.43 7.38 -2.39 -0.02 2.41 16 46 H 0.12 3.38 8.08 -2.39 -0.02 3.36 16 47 H 0.40 19.70 7.90 -92.70 -0.73 18.97 16 48 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 49 H 0.11 1.68 7.88 -2.38 -0.02 1.67 16 50 H 0.12 1.77 8.08 -2.39 -0.02 1.75 16 Total: -1.00 -81.92 407.24 -3.16 -85.08 By element: Atomic # 1 Polarization: 42.67 SS G_CDS: -1.05 Total: 41.63 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 6.53 Total: 15.18 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -8.54 Total: -119.75 kcal Atomic # 8 Polarization: -66.06 SS G_CDS: -2.13 Total: -68.19 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -81.92 -3.16 -85.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570756795.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.905 kcal (2) G-P(sol) polarization free energy of solvation -81.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds