Wall clock time and date at job start Sat Apr 11 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30012 * 127.33510 * 2 1 4 4 O 1.20662 * 112.29788 * 179.75884 * 3 2 1 5 5 C 1.33489 * 113.15493 * 0.46630 * 4 3 2 6 6 C 1.50704 * 126.82795 * 179.81778 * 5 4 3 7 7 C 1.52998 * 109.47243 * 299.68690 * 6 5 4 8 8 C 1.53011 * 109.46946 * 59.68428 * 6 5 4 9 9 C 1.37358 * 106.34701 * 359.55722 * 5 4 3 10 10 C 1.47399 * 128.56857 * 180.24285 * 9 5 4 11 11 O 1.21605 * 119.99730 * 90.00119 * 10 9 5 12 12 N 1.34774 * 119.99762 * 269.99926 * 10 9 5 13 13 C 1.46501 * 119.99691 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.46868 * 179.97438 * 13 12 10 15 15 O 1.42897 * 109.47098 * 64.99933 * 14 13 12 16 16 C 1.42900 * 114.00407 * 180.02562 * 15 14 13 17 17 C 1.52994 * 109.47698 * 179.97438 * 16 15 14 18 18 N 1.46498 * 109.47268 * 64.99521 * 17 16 15 19 19 C 1.46504 * 120.00363 * 270.00299 * 18 17 16 20 20 C 1.36940 * 119.99968 * 90.00261 * 18 17 16 21 21 H 1.08008 * 119.99863 * 22.70212 * 20 18 17 22 22 C 1.38810 * 120.00382 * 202.70907 * 20 18 17 23 23 N 1.31617 * 119.99727 * 11.51268 * 22 20 18 24 24 Si 1.86796 * 120.00234 * 191.51542 * 22 20 18 25 25 H 1.48508 * 109.47114 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47500 * 119.99545 * 24 22 20 27 27 H 1.48500 * 109.47272 * 239.99691 * 24 22 20 28 28 H 1.08997 * 109.47473 * 269.95926 * 1 2 3 29 29 H 1.09001 * 109.46890 * 29.95975 * 1 2 3 30 30 H 1.08998 * 109.47241 * 149.95236 * 1 2 3 31 31 H 1.08996 * 109.47158 * 179.67917 * 6 5 4 32 32 H 1.09003 * 109.46894 * 59.99832 * 7 6 5 33 33 H 1.08995 * 109.47224 * 299.99883 * 7 6 5 34 34 H 1.09004 * 109.47179 * 179.97438 * 7 6 5 35 35 H 1.08995 * 109.46776 * 300.00280 * 8 6 5 36 36 H 1.09003 * 109.46973 * 60.00091 * 8 6 5 37 37 H 1.08994 * 109.46737 * 179.97438 * 8 6 5 38 38 H 0.96996 * 119.99731 * 359.97438 * 12 10 9 39 39 H 1.09000 * 109.46676 * 299.99452 * 13 12 10 40 40 H 1.08994 * 109.47222 * 59.99648 * 13 12 10 41 41 H 1.08997 * 109.46817 * 184.99773 * 14 13 12 42 42 H 1.08999 * 109.47290 * 304.99555 * 14 13 12 43 43 H 1.09001 * 109.46936 * 300.00261 * 16 15 14 44 44 H 1.09000 * 109.46814 * 59.99616 * 16 15 14 45 45 H 1.08998 * 109.47457 * 185.00079 * 17 16 15 46 46 H 1.09000 * 109.47117 * 304.99970 * 17 16 15 47 47 H 1.08997 * 109.46526 * 93.91498 * 19 18 17 48 48 H 1.09004 * 109.47044 * 213.91320 * 19 18 17 49 49 H 1.08995 * 109.46774 * 333.91421 * 19 18 17 50 50 H 0.97002 * 119.99920 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4609 0.7207 0.0047 5 6 3.6494 -0.6008 -0.0013 6 6 4.9712 -1.3247 -0.0017 7 6 5.7646 -0.9371 -1.2512 8 6 5.7654 -0.9371 1.2473 9 6 2.3991 -1.1697 -0.0009 10 6 2.0400 -2.5993 -0.0013 11 8 1.8923 -3.1893 1.0517 12 7 1.8753 -3.2524 -1.1687 13 6 1.5178 -4.6731 -1.1690 14 6 1.3924 -5.1670 -2.6117 15 8 2.6683 -5.0981 -3.2514 16 6 2.6617 -5.5388 -4.6107 17 6 4.0720 -5.4212 -5.1920 18 7 4.9680 -6.3434 -4.4899 19 6 5.6883 -5.8975 -3.2947 20 6 5.1323 -7.6224 -4.9509 21 1 4.9223 -7.8550 -5.9845 22 6 5.5685 -8.6200 -4.0898 23 7 5.6075 -8.3991 -2.7929 24 14 6.1002 -10.2757 -4.7717 25 1 5.9626 -10.2695 -6.2504 26 1 7.5172 -10.5293 -4.4071 27 1 5.2430 -11.3450 -4.1998 28 1 -0.3634 -0.0007 1.0276 29 1 -0.3633 0.8904 -0.5132 30 1 -0.3633 -0.8895 -0.5146 31 1 4.7962 -2.4006 -0.0016 32 1 5.9395 0.1388 -1.2512 33 1 5.1988 -1.2132 -2.1410 34 1 6.7208 -1.4604 -1.2513 35 1 5.9403 0.1387 1.2473 36 1 5.2001 -1.2133 2.1375 37 1 6.7211 -1.4610 1.2472 38 1 1.9928 -2.7815 -2.0085 39 1 2.2924 -5.2427 -0.6556 40 1 0.5663 -4.8084 -0.6550 41 1 1.0405 -6.1986 -2.6131 42 1 0.6817 -4.5400 -3.1500 43 1 2.3359 -6.5780 -4.6541 44 1 1.9774 -4.9190 -5.1902 45 1 4.0501 -5.6725 -6.2524 46 1 4.4322 -4.3999 -5.0680 47 1 5.1158 -6.1621 -2.4057 48 1 6.6638 -6.3824 -3.2563 49 1 5.8212 -4.8164 -3.3329 50 1 5.9126 -9.0960 -2.1912 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571341554.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:30 Heat of formation + Delta-G solvation = -10.995290 kcal Electronic energy + Delta-G solvation = -30602.948684 eV Core-core repulsion = 26441.395201 eV Total energy + Delta-G solvation = -4161.553483 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.03367 -39.62181 -37.67233 -36.23154 -35.47008 -34.74060 -34.44102 -31.55909 -31.17089 -29.57174 -28.98635 -27.86104 -27.38119 -25.73288 -24.83615 -23.09166 -23.03910 -22.25888 -20.82778 -20.35708 -19.56398 -18.04619 -17.83456 -16.90027 -16.46872 -16.30037 -16.15324 -15.65837 -15.22126 -14.74478 -14.58479 -14.35892 -13.95043 -13.70082 -13.63557 -13.50712 -13.40676 -13.35169 -13.14772 -13.10365 -12.59087 -12.39406 -12.18822 -11.73669 -11.61440 -11.55312 -11.49055 -11.43894 -11.02942 -10.94355 -10.89442 -10.78654 -10.53450 -10.29514 -10.08769 -10.06413 -9.91320 -9.82262 -9.55801 -9.12345 -9.06393 -8.50721 -6.68996 -5.67494 -3.13775 1.16084 1.72669 2.33669 2.63956 3.21487 3.37967 3.45278 3.46928 3.90023 4.00293 4.10984 4.52447 4.57286 4.60961 4.80601 4.85756 5.00060 5.10270 5.18237 5.19405 5.23890 5.36366 5.43396 5.44030 5.44950 5.54344 5.60230 5.61807 5.64914 5.66491 5.76734 5.82833 5.95491 5.99531 6.04499 6.05365 6.16251 6.20159 6.34528 6.51749 6.73842 6.92212 7.39706 7.49325 7.73760 7.81760 7.95043 8.04648 8.08175 8.44300 9.28952 9.92510 10.42706 11.36548 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014142 B = 0.002832 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.460353 B = 9885.215358 C =10657.835278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.052 3.948 3 N -0.358 5.358 4 O 0.098 5.902 5 C 0.035 3.965 6 C -0.019 4.019 7 C -0.149 4.149 8 C -0.149 4.149 9 C -0.251 4.251 10 C 0.598 3.402 11 O -0.528 6.528 12 N -0.706 5.706 13 C 0.123 3.877 14 C 0.050 3.950 15 O -0.367 6.367 16 C 0.043 3.957 17 C 0.153 3.847 18 N -0.596 5.596 19 C 0.176 3.824 20 C -0.257 4.257 21 H 0.067 0.933 22 C 0.003 3.997 23 N -0.902 5.902 24 Si 0.901 3.099 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.291 1.291 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.406 0.594 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.049 0.951 44 H 0.024 0.976 45 H 0.058 0.942 46 H 0.043 0.957 47 H 0.032 0.968 48 H 0.037 0.963 49 H -0.008 1.008 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.661 16.987 3.798 19.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.110 4.110 3 N -0.065 5.065 4 O 0.037 5.963 5 C -0.028 4.028 6 C -0.038 4.038 7 C -0.206 4.206 8 C -0.206 4.206 9 C -0.259 4.259 10 C 0.382 3.618 11 O -0.404 6.404 12 N -0.357 5.357 13 C 0.000 4.000 14 C -0.027 4.027 15 O -0.285 6.285 16 C -0.037 4.037 17 C 0.025 3.975 18 N -0.318 5.318 19 C 0.031 3.969 20 C -0.387 4.387 21 H 0.084 0.916 22 C -0.196 4.196 23 N -0.546 5.546 24 Si 0.731 3.269 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.218 1.218 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.125 0.875 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.240 0.760 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.042 0.958 45 H 0.076 0.924 46 H 0.061 0.939 47 H 0.050 0.950 48 H 0.055 0.945 49 H 0.011 0.989 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.702 17.804 4.774 19.978 hybrid contribution -0.213 -1.768 -0.765 1.938 sum -7.916 16.036 4.009 18.327 Atomic orbital electron populations 1.20204 0.85240 1.03997 1.03892 1.24713 0.98481 0.86610 1.01208 1.73612 0.89208 1.23386 1.20274 1.84502 1.21318 1.22650 1.67839 1.24751 0.97036 0.83475 0.97561 1.19988 0.86799 0.98976 0.98070 1.21882 1.00565 1.02220 0.95920 1.21880 1.00353 1.02344 0.96044 1.21923 0.92772 0.95299 1.15881 1.16834 0.77033 0.83852 0.84086 1.90832 1.50318 1.67923 1.31317 1.45889 1.70046 1.11553 1.08243 1.21488 1.01751 0.80271 0.96449 1.22602 0.87694 1.00299 0.92143 1.88005 1.27835 1.86321 1.26385 1.23523 1.00987 0.97740 0.81435 1.20885 0.87620 0.93899 0.95116 1.43884 1.47540 1.09672 1.30749 1.20678 0.95797 0.91331 0.89075 1.19239 1.41118 0.84987 0.93352 0.91565 1.25023 1.01867 0.97565 0.95110 1.70100 1.50734 1.32764 1.01052 0.86245 0.78093 0.84337 0.78205 1.20431 1.21664 1.21836 0.89638 0.89951 0.89925 0.87497 0.91827 0.91701 0.90578 0.91734 0.91977 0.90694 0.75975 0.89747 0.90245 0.91871 0.93774 0.93270 0.95752 0.92396 0.93882 0.94995 0.94458 0.98919 0.93935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.49 36.01 0.38 -0.27 16 2 C 0.05 0.62 7.59 -79.76 -0.61 0.01 16 3 N -0.36 -4.56 12.01 34.78 0.42 -4.15 16 4 O 0.10 1.20 11.06 18.66 0.21 1.40 16 5 C 0.04 0.42 6.06 -34.63 -0.21 0.21 16 6 C -0.02 -0.20 3.33 -91.77 -0.31 -0.50 16 7 C -0.15 -1.37 9.18 37.16 0.34 -1.03 16 8 C -0.15 -1.34 9.18 37.16 0.34 -1.00 16 9 C -0.25 -3.23 6.24 -102.89 -0.64 -3.87 16 10 C 0.60 8.50 7.30 -12.53 -0.09 8.41 16 11 O -0.53 -9.32 17.11 5.27 0.09 -9.23 16 12 N -0.71 -8.93 5.50 -61.39 -0.34 -9.26 16 13 C 0.12 1.65 6.06 -4.04 -0.02 1.63 16 14 C 0.05 0.69 6.07 37.16 0.23 0.91 16 15 O -0.37 -6.48 9.85 -35.23 -0.35 -6.83 16 16 C 0.04 0.75 6.28 37.15 0.23 0.99 16 17 C 0.15 3.02 6.11 -4.05 -0.02 2.99 16 18 N -0.60 -14.77 2.89 -181.12 -0.52 -15.30 16 19 C 0.18 4.36 8.61 59.85 0.52 4.88 16 20 C -0.26 -6.96 9.67 -15.06 -0.15 -7.11 16 21 H 0.07 1.75 7.85 -52.48 -0.41 1.34 16 22 C 0.00 0.08 5.12 -17.43 -0.09 -0.01 16 23 N -0.90 -26.18 10.62 55.49 0.59 -25.60 16 24 Si 0.90 21.68 29.57 -169.99 -5.03 16.65 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.11 1.27 7.70 -51.93 -0.40 0.87 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.41 4.57 8.46 -40.82 -0.35 4.23 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 1.08 8.03 -51.93 -0.42 0.66 16 46 H 0.04 0.79 7.87 -51.93 -0.41 0.38 16 47 H 0.03 0.87 7.43 -51.93 -0.39 0.48 16 48 H 0.04 1.00 7.20 -51.93 -0.37 0.62 16 49 H -0.01 -0.17 7.85 -51.93 -0.41 -0.58 16 50 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 420.02 15.07 6.33 6.33 Total: -1.00 -33.00 420.02 -7.33 -40.33 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -8.63 Total: -0.59 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -0.10 Total: 6.24 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.15 Total: -54.30 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.05 Total: -14.66 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.00 -7.33 -40.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571341554.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.336 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds