Wall clock time and date at job start Sat Apr 11 2020 05:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47086 * 2 1 4 4 C 1.52996 * 109.47266 * 240.00090 * 2 1 3 5 5 C 1.50700 * 109.47483 * 119.99907 * 2 1 3 6 6 O 1.34253 * 126.52726 * 242.04947 * 5 2 1 7 7 C 1.34050 * 108.22906 * 180.22521 * 6 5 2 8 8 N 1.29936 * 109.23960 * 359.77012 * 7 6 5 9 9 C 1.36068 * 108.48027 * 359.97438 * 8 7 6 10 10 C 1.47413 * 126.45046 * 179.97438 * 9 8 7 11 11 O 1.21614 * 120.00004 * 175.13986 * 10 9 8 12 12 N 1.34779 * 120.00064 * 355.13163 * 10 9 8 13 13 C 1.46496 * 120.00175 * 180.02562 * 12 10 9 14 14 C 1.52993 * 109.47345 * 180.02562 * 13 12 10 15 15 O 1.42898 * 109.47054 * 65.00202 * 14 13 12 16 16 C 1.42904 * 114.00439 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47460 * 179.97438 * 16 15 14 18 18 C 1.52996 * 109.46829 * 180.02562 * 17 16 15 19 19 N 1.46506 * 109.46844 * 180.02562 * 18 17 16 20 20 C 1.36941 * 119.99930 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99830 * 0.02562 * 20 19 18 22 22 C 1.38813 * 119.99887 * 179.97438 * 20 19 18 23 23 N 1.31623 * 119.99655 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99927 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47039 * 90.00114 * 24 22 20 26 26 H 1.48499 * 109.47560 * 210.00092 * 24 22 20 27 27 H 1.48498 * 109.47237 * 330.00520 * 24 22 20 28 28 H 1.08998 * 109.47146 * 308.54373 * 1 2 3 29 29 H 1.08999 * 109.47449 * 68.54044 * 1 2 3 30 30 H 1.08999 * 109.46929 * 188.54430 * 1 2 3 31 31 H 1.09004 * 109.47335 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47034 * 299.99836 * 3 2 1 33 33 H 1.09003 * 109.47214 * 60.00374 * 3 2 1 34 34 H 1.09000 * 109.47388 * 291.64039 * 4 2 1 35 35 H 1.08997 * 109.47313 * 51.64278 * 4 2 1 36 36 H 1.09005 * 109.47614 * 171.63965 * 4 2 1 37 37 H 1.08005 * 125.38282 * 179.72771 * 7 6 5 38 38 H 0.96997 * 119.99635 * 0.02562 * 12 10 9 39 39 H 1.09004 * 109.47344 * 300.00328 * 13 12 10 40 40 H 1.09009 * 109.47357 * 59.99946 * 13 12 10 41 41 H 1.09007 * 109.47281 * 184.99660 * 14 13 12 42 42 H 1.08998 * 109.47492 * 304.99906 * 14 13 12 43 43 H 1.09001 * 109.47316 * 300.00435 * 16 15 14 44 44 H 1.09001 * 109.46767 * 59.99745 * 16 15 14 45 45 H 1.09002 * 109.47202 * 300.00227 * 17 16 15 46 46 H 1.09003 * 109.46782 * 60.00741 * 17 16 15 47 47 H 1.09002 * 109.47232 * 299.99986 * 18 17 16 48 48 H 1.09001 * 109.47265 * 60.00180 * 18 17 16 49 49 H 0.96993 * 119.99840 * 359.97438 * 19 18 17 50 50 H 0.97000 * 119.99413 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2304 6 8 2.7755 -0.1774 2.2134 7 6 3.0180 -1.1335 3.1211 8 7 2.4495 -2.2385 2.7415 9 6 1.8160 -2.0133 1.5585 10 6 1.0462 -2.9973 0.7761 11 8 0.4519 -2.6469 -0.2254 12 7 1.0011 -4.2853 1.1705 13 6 0.2365 -5.2633 0.3926 14 6 0.3488 -6.6393 1.0518 15 8 -0.2774 -6.6049 2.3358 16 6 -0.2288 -7.8476 3.0398 17 6 -0.9247 -7.6943 4.3938 18 6 -0.8721 -9.0246 5.1476 19 7 -1.5389 -8.8780 6.4439 20 6 -1.6160 -9.9450 7.2987 21 1 -1.1848 -10.8944 7.0176 22 6 -2.2474 -9.8060 8.5271 23 7 -2.7724 -8.6487 8.8699 24 14 -2.3532 -11.2616 9.6929 25 1 -1.1653 -11.2694 10.5841 26 1 -3.5864 -11.1507 10.5128 27 1 -2.3919 -12.5221 8.9087 28 1 -0.3633 0.6403 0.8037 29 1 -0.3634 0.3760 -0.9564 30 1 -0.3633 -1.0163 0.1527 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.8038 -1.7829 -1.1777 35 1 1.5598 -0.3009 -2.1329 36 1 3.1197 -0.5937 -1.3271 37 1 3.5953 -1.0058 4.0250 38 1 1.4749 -4.5647 1.9694 39 1 -0.8104 -4.9617 0.3581 40 1 0.6342 -5.3121 -0.6212 41 1 -0.1452 -7.3832 0.4266 42 1 1.4003 -6.9023 1.1673 43 1 -0.7349 -8.6162 2.4557 44 1 0.8106 -8.1359 3.1965 45 1 -0.4182 -6.9258 4.9777 46 1 -1.9642 -7.4058 4.2374 47 1 -1.3783 -9.7934 4.5638 48 1 0.1675 -9.3128 5.3040 49 1 -1.9252 -8.0250 6.6968 50 1 -3.2140 -8.5517 9.7281 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571354244.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:34 Heat of formation + Delta-G solvation = -56.649542 kcal Electronic energy + Delta-G solvation = -28990.816234 eV Core-core repulsion = 24827.283034 eV Total energy + Delta-G solvation = -4163.533200 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.83738 -39.94945 -38.23902 -37.24326 -35.41554 -35.15523 -34.66454 -32.32555 -30.58378 -29.89217 -28.92118 -27.66198 -27.54836 -25.18663 -24.62487 -23.27483 -22.57382 -22.48938 -21.08953 -20.82030 -19.84185 -18.57148 -17.14152 -17.03378 -16.86125 -16.73617 -16.36408 -15.80219 -15.48410 -15.45148 -14.89886 -14.64517 -14.38083 -14.27141 -14.14118 -13.78332 -13.55684 -13.37312 -13.05091 -13.00853 -12.67589 -12.39093 -12.21727 -12.00126 -11.94017 -11.70090 -11.47316 -11.40755 -11.37139 -11.26816 -10.91992 -10.88961 -10.73667 -10.67969 -10.58280 -10.13479 -10.04571 -9.69856 -9.61450 -9.38164 -9.12013 -8.86082 -6.91142 -5.74695 -3.03908 0.78320 1.72180 2.17774 2.87286 3.01540 3.44822 3.48530 3.51411 3.55118 3.72390 4.06570 4.36681 4.54513 4.57700 4.61691 4.68967 4.74980 4.90816 5.13494 5.14171 5.21669 5.27826 5.28454 5.31064 5.31722 5.40414 5.50263 5.54077 5.58000 5.59088 5.61427 5.64161 5.65147 5.77166 5.80028 5.96499 5.99872 6.10121 6.11523 6.28045 6.35169 6.38034 6.83730 6.88118 7.02490 7.18280 7.34362 7.70903 7.92400 8.44084 9.54923 10.13072 10.47857 11.48262 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017223 B = 0.001728 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.348250 B =16201.335594 C =17158.993214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.022 3.978 3 C -0.146 4.146 4 C -0.152 4.152 5 C 0.058 3.942 6 O -0.196 6.196 7 C 0.174 3.826 8 N -0.460 5.460 9 C -0.079 4.079 10 C 0.600 3.400 11 O -0.525 6.525 12 N -0.704 5.704 13 C 0.123 3.877 14 C 0.048 3.952 15 O -0.386 6.386 16 C 0.069 3.931 17 C -0.125 4.125 18 C 0.157 3.843 19 N -0.733 5.733 20 C -0.241 4.241 21 H 0.071 0.929 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.909 3.091 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.256 0.744 38 H 0.414 0.586 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.049 0.951 44 H 0.049 0.951 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.019 0.981 48 H 0.019 0.981 49 H 0.385 0.615 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.518 19.220 -22.941 32.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.021 3.979 3 C -0.204 4.204 4 C -0.209 4.209 5 C 0.001 3.999 6 O -0.082 6.082 7 C -0.055 4.055 8 N -0.189 5.189 9 C -0.198 4.198 10 C 0.386 3.614 11 O -0.404 6.404 12 N -0.355 5.355 13 C 0.000 4.000 14 C -0.030 4.030 15 O -0.305 6.305 16 C -0.008 4.008 17 C -0.163 4.163 18 C 0.029 3.971 19 N -0.377 5.377 20 C -0.372 4.372 21 H 0.089 0.911 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.208 1.208 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.271 0.729 38 H 0.250 0.750 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.218 0.782 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.028 18.855 -23.171 32.590 hybrid contribution 0.321 -0.273 1.131 1.207 sum 13.349 18.582 -22.040 31.769 Atomic orbital electron populations 1.22186 0.91402 1.05382 1.02041 1.19248 0.96876 0.94390 0.87356 1.21946 1.01366 0.94294 1.02749 1.22164 0.99983 1.03878 0.94836 1.23891 0.92830 0.92427 0.90752 1.84384 1.54504 1.41369 1.27916 1.28065 1.00898 0.80678 0.95856 1.70766 1.10385 1.27257 1.10459 1.21391 1.07907 0.94398 0.96134 1.16666 0.79773 0.81446 0.83478 1.90670 1.45334 1.78646 1.25747 1.45732 1.51834 1.07634 1.30270 1.21469 0.97593 0.86543 0.94439 1.22708 0.97675 0.96407 0.86166 1.87941 1.78776 1.34336 1.29480 1.22506 0.99752 0.85110 0.93448 1.21668 1.01266 0.99898 0.93420 1.20513 0.95750 0.93209 0.87637 1.42341 1.67852 1.12819 1.14722 1.19240 1.30310 0.91212 0.96444 0.91133 1.24770 1.01150 0.97101 0.98096 1.69673 1.42806 1.23064 1.22612 0.86158 0.77093 0.81768 0.80979 1.21706 1.21740 1.20756 0.93147 0.91332 0.88612 0.92225 0.91301 0.92106 0.89007 0.91256 0.93222 0.72861 0.74969 0.90112 0.89747 0.91451 0.92639 0.93237 0.93278 0.91151 0.91177 0.96333 0.96331 0.78174 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.19 37.15 0.30 -1.06 16 2 C 0.02 0.19 0.75 -155.66 -0.12 0.07 16 3 C -0.15 -0.96 8.05 37.16 0.30 -0.67 16 4 C -0.15 -1.25 8.17 37.16 0.30 -0.94 16 5 C 0.06 0.58 5.73 -35.08 -0.20 0.38 16 6 O -0.20 -1.73 10.19 6.52 0.07 -1.67 16 7 C 0.17 1.35 13.19 51.96 0.69 2.04 16 8 N -0.46 -5.00 11.07 -11.48 -0.13 -5.13 16 9 C -0.08 -0.89 6.78 -83.02 -0.56 -1.46 16 10 C 0.60 7.02 7.17 -12.52 -0.09 6.93 16 11 O -0.52 -6.45 10.27 5.27 0.05 -6.40 16 12 N -0.70 -7.55 5.50 -61.39 -0.34 -7.88 16 13 C 0.12 1.14 6.06 -4.05 -0.02 1.12 16 14 C 0.05 0.44 6.07 37.15 0.23 0.67 16 15 O -0.39 -5.05 10.29 -35.23 -0.36 -5.42 16 16 C 0.07 0.92 5.94 37.16 0.22 1.14 16 17 C -0.12 -2.13 5.70 -26.73 -0.15 -2.28 16 18 C 0.16 3.22 6.26 -4.04 -0.03 3.20 16 19 N -0.73 -19.29 5.60 -59.90 -0.34 -19.63 16 20 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 21 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 22 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 23 N -0.93 -28.85 13.06 55.49 0.72 -28.12 16 24 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 H 0.05 0.43 8.13 -51.93 -0.42 0.00 16 29 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 30 H 0.10 1.07 4.72 -51.93 -0.24 0.83 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.93 4.57 -51.93 -0.24 0.69 16 35 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 36 H 0.05 0.37 8.13 -51.93 -0.42 -0.05 16 37 H 0.26 0.70 8.06 -52.48 -0.42 0.28 16 38 H 0.41 4.52 8.21 -40.82 -0.34 4.18 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.38 10.65 7.67 -40.82 -0.31 10.33 16 50 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 408.01 15.07 6.15 6.15 Total: -1.00 -34.32 408.01 -6.85 -41.17 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -8.28 Total: 7.74 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 0.62 Total: 1.51 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: -0.08 Total: -60.76 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.24 Total: -13.48 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.32 -6.85 -41.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571354244.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.475 kcal (2) G-P(sol) polarization free energy of solvation -34.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds