Wall clock time and date at job start Sat Apr 11 2020 05:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30172 * 126.80045 * 2 1 4 4 O 1.20925 * 111.60318 * 180.02562 * 3 2 1 5 5 C 1.34035 * 111.56596 * 359.76597 * 4 3 2 6 6 C 1.50704 * 126.77730 * 180.28633 * 5 4 3 7 7 C 1.35448 * 106.44964 * 0.37494 * 5 4 3 8 8 C 1.50698 * 128.00818 * 179.91085 * 7 5 4 9 9 C 1.53005 * 109.46966 * 188.36258 * 8 7 5 10 10 C 1.52998 * 109.47130 * 68.36456 * 8 7 5 11 11 C 1.50697 * 109.47177 * 308.36328 * 8 7 5 12 12 O 1.21281 * 119.99874 * 113.79270 * 11 8 7 13 13 N 1.34781 * 120.00015 * 293.78815 * 11 8 7 14 14 C 1.46496 * 119.99757 * 4.79461 * 13 11 8 15 15 C 1.46499 * 120.00098 * 184.79702 * 13 11 8 16 16 C 1.52998 * 109.46902 * 269.99961 * 15 13 11 17 17 H 1.09003 * 109.47419 * 60.00267 * 16 15 13 18 18 O 1.42897 * 109.47293 * 299.99949 * 16 15 13 19 19 C 1.53009 * 109.46981 * 179.97438 * 16 15 13 20 20 N 1.46502 * 109.47059 * 185.00230 * 19 16 15 21 21 C 1.36936 * 119.99633 * 180.02562 * 20 19 16 22 22 H 1.07999 * 119.99952 * 359.71670 * 21 20 19 23 23 C 1.38808 * 119.99557 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00270 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 120.00374 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47210 * 89.99932 * 25 23 21 27 27 H 1.48499 * 109.47255 * 210.00284 * 25 23 21 28 28 H 1.48501 * 109.46820 * 330.00000 * 25 23 21 29 29 H 1.09002 * 109.46906 * 263.05741 * 1 2 3 30 30 H 1.08994 * 109.47081 * 23.05703 * 1 2 3 31 31 H 1.09000 * 109.46858 * 143.05473 * 1 2 3 32 32 H 1.08995 * 109.47261 * 274.52625 * 6 5 4 33 33 H 1.09007 * 109.46601 * 34.52471 * 6 5 4 34 34 H 1.08999 * 109.47201 * 154.51964 * 6 5 4 35 35 H 1.08998 * 109.46972 * 177.71294 * 9 8 7 36 36 H 1.09003 * 109.47173 * 297.70967 * 9 8 7 37 37 H 1.08994 * 109.46940 * 57.71158 * 9 8 7 38 38 H 1.08997 * 109.46980 * 304.50176 * 10 8 7 39 39 H 1.09003 * 109.47306 * 64.50057 * 10 8 7 40 40 H 1.08999 * 109.47324 * 184.50413 * 10 8 7 41 41 H 1.09002 * 109.47410 * 268.61095 * 14 13 11 42 42 H 1.08998 * 109.47322 * 28.61595 * 14 13 11 43 43 H 1.09004 * 109.46979 * 148.61897 * 14 13 11 44 44 H 1.08997 * 109.47079 * 149.99498 * 15 13 11 45 45 H 1.09001 * 109.47250 * 30.00200 * 15 13 11 46 46 H 0.96702 * 113.99509 * 299.99887 * 18 16 15 47 47 H 1.09004 * 109.46849 * 64.99884 * 19 16 15 48 48 H 1.09000 * 109.46693 * 305.00025 * 19 16 15 49 49 H 0.97001 * 119.99884 * 359.97438 * 20 19 16 50 50 H 0.96997 * 120.00229 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 -0.0005 5 6 3.6024 -0.6067 0.0042 6 6 4.9022 -1.3695 0.0112 7 6 2.3540 -1.1321 -0.0006 8 6 1.9591 -2.5864 -0.0002 9 6 0.4491 -2.7049 -0.2165 10 6 2.3328 -3.2159 1.3433 11 6 2.6835 -3.3039 -1.1099 12 8 3.5098 -4.1515 -0.8459 13 7 2.4130 -3.0037 -2.3957 14 6 1.4936 -1.9086 -2.7143 15 6 3.0385 -3.7725 -3.4746 16 6 4.3633 -3.1155 -3.8671 17 1 5.0282 -3.0941 -3.0036 18 8 4.1190 -1.7802 -4.3135 19 6 5.0168 -3.9188 -4.9935 20 7 6.3390 -3.3605 -5.2879 21 6 7.1155 -3.9195 -6.2675 22 1 6.7551 -4.7746 -6.8200 23 6 8.3679 -3.3902 -6.5468 24 7 9.1147 -3.9276 -7.4880 25 14 8.9939 -1.9150 -5.5867 26 1 9.7333 -2.3828 -4.3869 27 1 9.9016 -1.1137 -6.4464 28 1 7.8441 -1.0758 -5.1635 29 1 -0.3633 -0.1242 1.0202 30 1 -0.3633 0.9455 -0.4025 31 1 -0.3633 -0.8213 -0.6177 32 1 5.2602 -1.4867 -1.0116 33 1 5.6420 -0.8213 0.5946 34 1 4.7444 -2.3521 0.4558 35 1 0.1694 -3.7577 -0.2568 36 1 -0.0751 -2.2210 0.6075 37 1 0.1774 -2.2206 -1.1544 38 1 3.3946 -3.0609 1.5343 39 1 1.7490 -2.7505 2.1375 40 1 2.1209 -4.2847 1.3152 41 1 0.4803 -2.2998 -2.8056 42 1 1.5254 -1.1643 -1.9187 43 1 1.7909 -1.4470 -3.6560 44 1 2.3736 -3.7940 -4.3380 45 1 3.2248 -4.7910 -3.1342 46 1 3.5337 -1.7230 -5.0811 47 1 4.3933 -3.8665 -5.8861 48 1 5.1222 -4.9587 -4.6843 49 1 6.6639 -2.5945 -4.7893 50 1 9.9897 -3.5576 -7.6834 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571587492.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:46 Heat of formation + Delta-G solvation = 6.994830 kcal Electronic energy + Delta-G solvation = -32138.076603 eV Core-core repulsion = 27977.303231 eV Total energy + Delta-G solvation = -4160.773373 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.22669 -40.79013 -37.92457 -36.81528 -35.33566 -34.17995 -34.11521 -32.75133 -31.51562 -29.99975 -29.62304 -27.97298 -27.30635 -26.82118 -25.93588 -23.94254 -22.72868 -21.57145 -21.32382 -20.63155 -19.16189 -17.86867 -17.71953 -17.41832 -16.66794 -16.43957 -16.21581 -15.54859 -15.38169 -14.83804 -14.53772 -14.44830 -14.34913 -13.83953 -13.73105 -13.51266 -13.44107 -13.30044 -13.13444 -12.91376 -12.86556 -12.68428 -12.60192 -12.43281 -12.24769 -12.16358 -12.10081 -11.68545 -11.62013 -11.52209 -11.25110 -11.04722 -10.87975 -10.82567 -10.22513 -10.17862 -9.99589 -9.78225 -9.58035 -9.19881 -8.90877 -8.62085 -7.23188 -5.76186 -3.11774 1.22361 1.87154 2.39916 2.79222 2.89043 3.41756 3.48073 3.48632 3.81632 4.06742 4.23459 4.36911 4.40905 4.54225 4.62221 4.63930 4.84003 4.90714 4.94678 4.99174 5.04509 5.07900 5.15172 5.20612 5.24622 5.29297 5.33582 5.35558 5.43049 5.49599 5.52091 5.54069 5.55609 5.57910 5.65962 5.68524 5.76089 5.82372 5.85947 5.89482 6.03156 6.31097 6.44247 6.60485 7.17389 7.83358 7.98490 7.99774 8.04482 8.42678 9.22300 9.94726 10.14737 11.41995 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015463 B = 0.003367 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.392501 B = 8315.157044 C = 8926.755882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.029 3.971 3 N -0.364 5.364 4 O 0.098 5.902 5 C -0.001 4.001 6 C -0.089 4.089 7 C -0.202 4.202 8 C 0.004 3.996 9 C -0.165 4.165 10 C -0.127 4.127 11 C 0.524 3.476 12 O -0.529 6.529 13 N -0.598 5.598 14 C 0.066 3.934 15 C 0.086 3.914 16 C 0.082 3.918 17 H 0.100 0.900 18 O -0.553 6.553 19 C 0.132 3.868 20 N -0.749 5.749 21 C -0.246 4.246 22 H 0.089 0.911 23 C 0.006 3.994 24 N -0.934 5.934 25 Si 0.883 3.117 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.273 1.273 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.368 0.632 47 H 0.028 0.972 48 H 0.036 0.964 49 H 0.365 0.635 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.095 5.149 18.296 29.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 N -0.070 5.070 4 O 0.035 5.965 5 C -0.064 4.064 6 C -0.146 4.146 7 C -0.206 4.206 8 C 0.000 4.000 9 C -0.222 4.222 10 C -0.185 4.185 11 C 0.311 3.689 12 O -0.405 6.405 13 N -0.330 5.330 14 C -0.077 4.077 15 C -0.037 4.037 16 C 0.022 3.978 17 H 0.118 0.882 18 O -0.358 6.358 19 C 0.003 3.997 20 N -0.395 5.395 21 C -0.376 4.376 22 H 0.107 0.893 23 C -0.190 4.190 24 N -0.582 5.582 25 Si 0.713 3.287 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.199 1.199 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.113 0.887 46 H 0.214 0.786 47 H 0.046 0.954 48 H 0.053 0.947 49 H 0.199 0.801 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.387 6.011 18.740 29.808 hybrid contribution 0.167 0.194 -0.029 0.258 sum -22.221 6.206 18.711 29.705 Atomic orbital electron populations 1.20721 0.86119 1.04472 1.03755 1.23305 0.98733 0.88084 1.02917 1.73873 0.89261 1.23790 1.20061 1.84838 1.21536 1.22418 1.67742 1.24319 0.98266 0.83607 1.00204 1.20620 0.89980 0.98922 1.05073 1.20389 0.91951 0.95621 1.12658 1.18971 0.96778 0.88575 0.95632 1.22608 0.92513 1.03381 1.03679 1.21731 1.02517 1.00987 0.93254 1.20364 0.82457 0.82802 0.83307 1.90726 1.33162 1.33579 1.83056 1.47579 1.45908 1.34067 1.05436 1.22277 0.92264 0.89810 1.03349 1.22223 0.95034 0.96705 0.89781 1.22602 0.94720 0.82693 0.97792 0.88179 1.86612 1.71416 1.26780 1.50968 1.21201 0.87956 0.96039 0.94504 1.42576 1.15498 1.36976 1.44426 1.19042 0.96770 1.11393 1.10412 0.89310 1.24657 0.96792 0.99033 0.98516 1.69705 1.11733 1.43029 1.33741 0.86556 0.78706 0.83693 0.79776 1.21036 1.21725 1.19908 0.90012 0.90606 0.88657 0.88788 0.89528 0.88157 0.91438 0.90535 0.89992 0.91505 0.91813 0.91102 0.92533 0.90087 0.90542 0.89965 0.88668 0.78556 0.95446 0.94665 0.80144 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 8.56 36.01 0.31 -0.27 16 2 C 0.03 0.29 5.94 -82.10 -0.49 -0.20 16 3 N -0.36 -4.52 12.07 33.42 0.40 -4.12 16 4 O 0.10 1.26 11.20 17.19 0.19 1.45 16 5 C 0.00 -0.01 7.38 -35.30 -0.26 -0.27 16 6 C -0.09 -0.96 9.54 36.01 0.34 -0.62 16 7 C -0.20 -2.04 3.06 -104.42 -0.32 -2.36 16 8 C 0.00 0.04 0.51 -156.81 -0.08 -0.04 16 9 C -0.17 -1.04 6.36 37.16 0.24 -0.81 16 10 C -0.13 -1.11 7.71 37.16 0.29 -0.83 16 11 C 0.52 6.20 5.24 -10.99 -0.06 6.14 16 12 O -0.53 -7.91 14.98 5.56 0.08 -7.83 16 13 N -0.60 -6.47 2.79 -181.58 -0.51 -6.97 16 14 C 0.07 0.56 8.39 59.84 0.50 1.06 16 15 C 0.09 1.01 5.07 -4.04 -0.02 0.99 16 16 C 0.08 1.25 3.27 -26.73 -0.09 1.16 16 17 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 18 O -0.55 -8.31 11.98 -35.23 -0.42 -8.73 16 19 C 0.13 2.47 5.90 -4.04 -0.02 2.44 16 20 N -0.75 -18.18 5.35 -59.90 -0.32 -18.50 16 21 C -0.25 -7.11 10.47 -15.06 -0.16 -7.26 16 22 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 23 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 24 N -0.93 -29.80 13.97 55.49 0.78 -29.02 16 25 Si 0.88 22.81 27.74 -169.99 -4.71 18.09 16 26 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 28 H -0.27 -6.80 6.52 56.52 0.37 -6.43 16 29 H 0.08 0.40 7.95 -51.93 -0.41 -0.02 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.42 4.43 -51.93 -0.23 0.19 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 1.09 5.04 -51.93 -0.26 0.83 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.37 6.38 -51.93 -0.33 0.04 16 37 H 0.08 0.46 2.54 -51.93 -0.13 0.33 16 38 H 0.07 0.64 6.15 -51.93 -0.32 0.32 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.62 8.06 -51.93 -0.42 0.21 16 41 H 0.06 0.34 6.87 -51.93 -0.36 -0.01 16 42 H 0.08 0.73 2.95 -51.93 -0.15 0.57 16 43 H 0.08 0.65 6.86 -51.93 -0.36 0.30 16 44 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 45 H 0.10 1.21 7.49 -51.93 -0.39 0.82 16 46 H 0.37 4.32 8.80 45.56 0.40 4.72 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.37 8.94 5.53 -40.82 -0.23 8.71 16 50 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 382.34 15.07 5.76 5.76 Total: -1.00 -35.88 382.34 -5.24 -41.12 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.58 Total: 9.53 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 0.09 Total: -0.78 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.35 Total: -58.61 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.15 Total: -15.11 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.71 Total: 18.09 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.88 -5.24 -41.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571587492.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.117 kcal (2) G-P(sol) polarization free energy of solvation -35.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds