Wall clock time and date at job start Sat Apr 11 2020 05:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30172 * 126.80045 * 2 1 4 4 O 1.20925 * 111.60318 * 180.02562 * 3 2 1 5 5 C 1.34035 * 111.56596 * 359.76597 * 4 3 2 6 6 C 1.50704 * 126.77730 * 180.28633 * 5 4 3 7 7 C 1.35448 * 106.44964 * 0.37494 * 5 4 3 8 8 C 1.50698 * 128.00818 * 179.91085 * 7 5 4 9 9 C 1.53005 * 109.46966 * 188.36258 * 8 7 5 10 10 C 1.52998 * 109.47130 * 68.36456 * 8 7 5 11 11 C 1.50697 * 109.47177 * 308.36328 * 8 7 5 12 12 O 1.21281 * 119.99874 * 113.79270 * 11 8 7 13 13 N 1.34781 * 120.00015 * 293.78815 * 11 8 7 14 14 C 1.46496 * 119.99757 * 4.79461 * 13 11 8 15 15 C 1.46499 * 120.00098 * 184.79702 * 13 11 8 16 16 C 1.52998 * 109.46902 * 269.99961 * 15 13 11 17 17 H 1.09003 * 109.47419 * 60.00267 * 16 15 13 18 18 O 1.42897 * 109.47293 * 299.99949 * 16 15 13 19 19 C 1.53009 * 109.46981 * 179.97438 * 16 15 13 20 20 N 1.46502 * 109.47059 * 185.00230 * 19 16 15 21 21 C 1.36936 * 119.99633 * 180.02562 * 20 19 16 22 22 H 1.07999 * 119.99952 * 359.71670 * 21 20 19 23 23 C 1.38808 * 119.99557 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00270 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 120.00374 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47210 * 89.99932 * 25 23 21 27 27 H 1.48499 * 109.47255 * 210.00284 * 25 23 21 28 28 H 1.48501 * 109.46820 * 330.00000 * 25 23 21 29 29 H 1.09002 * 109.46906 * 263.05741 * 1 2 3 30 30 H 1.08994 * 109.47081 * 23.05703 * 1 2 3 31 31 H 1.09000 * 109.46858 * 143.05473 * 1 2 3 32 32 H 1.08995 * 109.47261 * 274.52625 * 6 5 4 33 33 H 1.09007 * 109.46601 * 34.52471 * 6 5 4 34 34 H 1.08999 * 109.47201 * 154.51964 * 6 5 4 35 35 H 1.08998 * 109.46972 * 177.71294 * 9 8 7 36 36 H 1.09003 * 109.47173 * 297.70967 * 9 8 7 37 37 H 1.08994 * 109.46940 * 57.71158 * 9 8 7 38 38 H 1.08997 * 109.46980 * 304.50176 * 10 8 7 39 39 H 1.09003 * 109.47306 * 64.50057 * 10 8 7 40 40 H 1.08999 * 109.47324 * 184.50413 * 10 8 7 41 41 H 1.09002 * 109.47410 * 268.61095 * 14 13 11 42 42 H 1.08998 * 109.47322 * 28.61595 * 14 13 11 43 43 H 1.09004 * 109.46979 * 148.61897 * 14 13 11 44 44 H 1.08997 * 109.47079 * 149.99498 * 15 13 11 45 45 H 1.09001 * 109.47250 * 30.00200 * 15 13 11 46 46 H 0.96702 * 113.99509 * 299.99887 * 18 16 15 47 47 H 1.09004 * 109.46849 * 64.99884 * 19 16 15 48 48 H 1.09000 * 109.46693 * 305.00025 * 19 16 15 49 49 H 0.97001 * 119.99884 * 359.97438 * 20 19 16 50 50 H 0.96997 * 120.00229 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 -0.0005 5 6 3.6024 -0.6067 0.0042 6 6 4.9022 -1.3695 0.0112 7 6 2.3540 -1.1321 -0.0006 8 6 1.9591 -2.5864 -0.0002 9 6 0.4491 -2.7049 -0.2165 10 6 2.3328 -3.2159 1.3433 11 6 2.6835 -3.3039 -1.1099 12 8 3.5098 -4.1515 -0.8459 13 7 2.4130 -3.0037 -2.3957 14 6 1.4936 -1.9086 -2.7143 15 6 3.0385 -3.7725 -3.4746 16 6 4.3633 -3.1155 -3.8671 17 1 5.0282 -3.0941 -3.0036 18 8 4.1190 -1.7802 -4.3135 19 6 5.0168 -3.9188 -4.9935 20 7 6.3390 -3.3605 -5.2879 21 6 7.1155 -3.9195 -6.2675 22 1 6.7551 -4.7746 -6.8200 23 6 8.3679 -3.3902 -6.5468 24 7 9.1147 -3.9276 -7.4880 25 14 8.9939 -1.9150 -5.5867 26 1 9.7333 -2.3828 -4.3869 27 1 9.9016 -1.1137 -6.4464 28 1 7.8441 -1.0758 -5.1635 29 1 -0.3633 -0.1242 1.0202 30 1 -0.3633 0.9455 -0.4025 31 1 -0.3633 -0.8213 -0.6177 32 1 5.2602 -1.4867 -1.0116 33 1 5.6420 -0.8213 0.5946 34 1 4.7444 -2.3521 0.4558 35 1 0.1694 -3.7577 -0.2568 36 1 -0.0751 -2.2210 0.6075 37 1 0.1774 -2.2206 -1.1544 38 1 3.3946 -3.0609 1.5343 39 1 1.7490 -2.7505 2.1375 40 1 2.1209 -4.2847 1.3152 41 1 0.4803 -2.2998 -2.8056 42 1 1.5254 -1.1643 -1.9187 43 1 1.7909 -1.4470 -3.6560 44 1 2.3736 -3.7940 -4.3380 45 1 3.2248 -4.7910 -3.1342 46 1 3.5337 -1.7230 -5.0811 47 1 4.3933 -3.8665 -5.8861 48 1 5.1222 -4.9587 -4.6843 49 1 6.6639 -2.5945 -4.7893 50 1 9.9897 -3.5576 -7.6834 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571587492.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:45 Heat of formation + Delta-G solvation = -20.370882 kcal Electronic energy + Delta-G solvation = -32139.263270 eV Core-core repulsion = 27977.303231 eV Total energy + Delta-G solvation = -4161.960039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.04004 -41.65114 -39.12286 -37.66392 -36.51474 -35.84092 -34.88873 -33.58796 -33.45287 -31.30691 -30.28658 -28.80569 -28.26572 -27.50752 -27.14593 -24.96075 -24.15170 -22.93889 -22.44346 -21.40220 -20.00652 -19.83035 -18.70734 -18.28758 -17.75860 -17.33414 -17.12744 -16.67916 -16.47501 -16.39117 -15.84084 -15.36207 -15.21242 -15.04983 -14.89691 -14.54651 -14.39748 -14.25113 -14.12871 -13.86272 -13.79355 -13.67698 -13.58871 -13.33423 -13.32910 -13.23895 -12.89326 -12.85921 -12.69433 -12.55371 -12.37101 -12.30211 -12.19172 -11.98522 -11.87905 -11.68208 -11.26962 -11.04967 -10.94277 -10.65257 -10.04881 -9.56035 -9.34245 -8.06975 -5.39736 0.36363 1.12019 1.35791 1.36577 1.45112 1.52327 1.95321 2.05364 2.44496 3.12247 3.23464 3.31731 3.38086 3.48112 3.62961 3.66598 3.76300 3.91518 4.02741 4.09332 4.17285 4.22548 4.28779 4.30876 4.41304 4.50581 4.56347 4.58046 4.65374 4.69486 4.72879 4.75645 4.77841 4.83503 4.87138 4.90415 4.93942 4.96751 5.00956 5.13602 5.17900 5.29799 5.36703 5.46268 5.70529 6.17208 6.33116 6.80989 7.03982 7.10593 7.21596 7.80581 7.98292 9.14403 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015463 B = 0.003367 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.392501 B = 8315.157044 C = 8926.755882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.043 3.957 3 N -0.392 5.392 4 O 0.073 5.927 5 C -0.018 4.018 6 C -0.084 4.084 7 C -0.195 4.195 8 C 0.008 3.992 9 C -0.165 4.165 10 C -0.128 4.128 11 C 0.518 3.482 12 O -0.568 6.568 13 N -0.596 5.596 14 C 0.060 3.940 15 C 0.094 3.906 16 C 0.101 3.899 17 H 0.074 0.926 18 O -0.563 6.563 19 C 0.127 3.873 20 N -0.755 5.755 21 C -0.235 4.235 22 H 0.061 0.939 23 C -0.060 4.060 24 N -0.981 5.981 25 Si 0.951 3.049 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.258 1.258 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.115 0.885 45 H 0.085 0.915 46 H 0.384 0.616 47 H 0.043 0.957 48 H 0.032 0.968 49 H 0.365 0.635 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.408 6.204 19.547 33.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 N -0.102 5.102 4 O 0.014 5.986 5 C -0.081 4.081 6 C -0.141 4.141 7 C -0.199 4.199 8 C 0.005 3.995 9 C -0.221 4.221 10 C -0.185 4.185 11 C 0.306 3.694 12 O -0.447 6.447 13 N -0.327 5.327 14 C -0.082 4.082 15 C -0.030 4.030 16 C 0.040 3.960 17 H 0.092 0.908 18 O -0.370 6.370 19 C 0.000 4.000 20 N -0.400 5.400 21 C -0.366 4.366 22 H 0.079 0.921 23 C -0.252 4.252 24 N -0.632 5.632 25 Si 0.778 3.222 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.183 1.183 29 H 0.119 0.881 30 H 0.098 0.902 31 H 0.135 0.865 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.133 0.867 45 H 0.103 0.897 46 H 0.233 0.767 47 H 0.061 0.939 48 H 0.050 0.950 49 H 0.198 0.802 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -25.748 7.078 20.002 33.364 hybrid contribution 1.106 -0.206 -0.442 1.209 sum -24.642 6.872 19.560 32.203 Atomic orbital electron populations 1.20973 0.83235 1.05648 1.05500 1.23890 1.00297 0.87052 1.00463 1.73875 0.89407 1.25042 1.21901 1.84806 1.22078 1.22882 1.68817 1.24498 0.99016 0.83595 1.00992 1.20531 0.90558 0.99086 1.03922 1.20540 0.91430 0.96192 1.11731 1.19017 0.98563 0.87343 0.94606 1.22682 0.89998 1.04300 1.05132 1.21749 1.01953 1.01068 0.93771 1.20905 0.81984 0.82411 0.84114 1.90709 1.34840 1.35463 1.83688 1.47645 1.45804 1.34334 1.04898 1.22487 0.93407 0.89092 1.03187 1.22059 0.93884 0.95775 0.91259 1.22270 0.95926 0.82583 0.95237 0.90839 1.86585 1.72101 1.26373 1.51951 1.21439 0.85921 0.96213 0.96470 1.42626 1.17159 1.36923 1.43330 1.19066 0.97105 1.10133 1.10270 0.92097 1.25436 0.97320 1.02410 1.00001 1.69866 1.12277 1.45076 1.35970 0.85465 0.78325 0.80181 0.78181 1.20607 1.21842 1.18317 0.88071 0.90250 0.86457 0.90877 0.88115 0.88420 0.90877 0.88336 0.88960 0.93051 0.89823 0.91330 0.89117 0.90589 0.90350 0.86706 0.89694 0.76663 0.93899 0.94998 0.80200 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 8.56 71.24 0.61 -0.19 16 2 C 0.04 0.74 5.94 43.58 0.26 1.00 16 3 N -0.39 -9.32 12.07 -49.56 -0.60 -9.91 16 4 O 0.07 1.87 11.20 71.67 0.80 2.67 16 5 C -0.02 -0.41 7.38 25.04 0.18 -0.22 16 6 C -0.08 -1.87 9.54 71.24 0.68 -1.19 16 7 C -0.19 -3.61 3.06 -19.74 -0.06 -3.67 16 8 C 0.01 0.14 0.51 -53.67 -0.03 0.11 16 9 C -0.16 -1.42 6.36 71.98 0.46 -0.96 16 10 C -0.13 -2.04 7.71 71.98 0.56 -1.49 16 11 C 0.52 11.57 5.24 87.66 0.46 12.03 16 12 O -0.57 -16.99 14.98 -3.03 -0.05 -17.03 16 13 N -0.60 -11.56 2.79 -846.77 -2.36 -13.92 16 14 C 0.06 0.80 8.39 127.77 1.07 1.87 16 15 C 0.09 2.03 5.07 86.38 0.44 2.46 16 16 C 0.10 2.94 3.27 30.60 0.10 3.04 16 17 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 18 O -0.56 -15.89 11.98 -148.98 -1.79 -17.68 16 19 C 0.13 4.65 5.90 86.38 0.51 5.16 16 20 N -0.75 -36.41 5.35 -343.43 -1.84 -38.25 16 21 C -0.23 -13.71 10.47 84.03 0.88 -12.83 16 22 H 0.06 3.83 8.06 -2.91 -0.02 3.81 16 23 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 24 N -0.98 -63.99 13.97 21.65 0.30 -63.69 16 25 Si 0.95 47.64 27.74 68.60 1.90 49.55 16 26 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 27 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 28 H -0.26 -12.15 6.52 99.48 0.65 -11.50 16 29 H 0.10 0.51 7.95 -2.39 -0.02 0.49 16 30 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.12 0.44 4.43 -2.39 -0.01 0.43 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.10 1.85 8.14 -2.38 -0.02 1.84 16 34 H 0.10 2.21 5.04 -2.39 -0.01 2.20 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.10 0.45 6.38 -2.39 -0.02 0.44 16 37 H 0.09 0.59 2.54 -2.39 -0.01 0.58 16 38 H 0.05 0.97 6.15 -2.39 -0.01 0.96 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 1.13 8.06 -2.39 -0.02 1.11 16 41 H 0.09 0.64 6.87 -2.39 -0.02 0.62 16 42 H 0.08 1.12 2.95 -2.39 -0.01 1.11 16 43 H 0.08 1.05 6.86 -2.38 -0.02 1.04 16 44 H 0.11 1.74 8.07 -2.39 -0.02 1.72 16 45 H 0.08 2.06 7.49 -2.39 -0.02 2.04 16 46 H 0.38 7.96 8.80 -74.06 -0.65 7.31 16 47 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 48 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.36 17.57 5.53 -92.71 -0.51 17.06 16 50 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -80.11 382.34 2.74 -77.37 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: -0.23 Total: 28.92 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 6.58 Total: 1.97 kcal Atomic # 7 Polarization: -121.28 SS G_CDS: -4.49 Total: -125.77 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -1.03 Total: -32.04 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 1.90 Total: 49.55 kcal Total: -80.11 2.74 -77.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571587492.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.002 kcal (2) G-P(sol) polarization free energy of solvation -80.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds