Wall clock time and date at job start Sat Apr 11 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.34255 * 126.51910 * 2 1 4 4 C 1.34055 * 108.22419 * 180.02562 * 3 2 1 5 5 C 1.50690 * 125.38003 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47328 * 299.97662 * 5 4 3 7 7 C 1.52999 * 109.47301 * 59.97753 * 5 4 3 8 8 N 1.29939 * 109.23927 * 359.74699 * 4 3 2 9 9 C 1.36064 * 108.47943 * 0.40969 * 8 4 3 10 10 C 1.47424 * 126.44886 * 179.86205 * 9 8 4 11 11 O 1.21612 * 119.99833 * 179.17620 * 10 9 8 12 12 N 1.34776 * 119.99942 * 359.17661 * 10 9 8 13 13 C 1.46496 * 119.99984 * 355.72169 * 12 10 9 14 14 C 1.46498 * 119.99879 * 175.72064 * 12 10 9 15 15 C 1.52998 * 109.46980 * 90.00089 * 14 12 10 16 16 H 1.08995 * 109.47641 * 60.00241 * 15 14 12 17 17 O 1.42899 * 109.47151 * 299.99804 * 15 14 12 18 18 C 1.53007 * 109.47198 * 180.02562 * 15 14 12 19 19 N 1.46494 * 109.47004 * 184.99969 * 18 15 14 20 20 C 1.46505 * 119.99811 * 269.99570 * 19 18 15 21 21 C 1.36935 * 120.00227 * 90.00132 * 19 18 15 22 22 H 1.08000 * 119.99991 * 332.98183 * 21 19 18 23 23 C 1.38812 * 120.00100 * 152.70367 * 21 19 18 24 24 N 1.31619 * 120.00044 * 166.11248 * 23 21 19 25 25 Si 1.86804 * 120.00196 * 346.11107 * 23 21 19 26 26 H 1.48501 * 109.46676 * 85.31382 * 25 23 21 27 27 H 1.48496 * 109.47233 * 205.31717 * 25 23 21 28 28 H 1.48498 * 109.46951 * 325.31824 * 25 23 21 29 29 H 1.08994 * 109.46789 * 269.94926 * 1 2 3 30 30 H 1.08991 * 109.47024 * 29.95724 * 1 2 3 31 31 H 1.08999 * 109.46820 * 149.95685 * 1 2 3 32 32 H 1.09004 * 109.47109 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.47031 * 59.99945 * 6 5 4 34 34 H 1.09002 * 109.47261 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.47190 * 300.00121 * 6 5 4 36 36 H 1.09004 * 109.46959 * 299.99994 * 7 5 4 37 37 H 1.08995 * 109.47172 * 59.99914 * 7 5 4 38 38 H 1.09002 * 109.47251 * 179.97438 * 7 5 4 39 39 H 1.09007 * 109.46983 * 273.80210 * 13 12 10 40 40 H 1.09004 * 109.47524 * 33.80359 * 13 12 10 41 41 H 1.09004 * 109.47058 * 153.80491 * 13 12 10 42 42 H 1.08999 * 109.47422 * 330.00019 * 14 12 10 43 43 H 1.08999 * 109.47283 * 210.00022 * 14 12 10 44 44 H 0.96704 * 114.00066 * 299.99805 * 17 15 14 45 45 H 1.09000 * 109.46798 * 64.99650 * 18 15 14 46 46 H 1.08997 * 109.46773 * 304.99943 * 18 15 14 47 47 H 1.09001 * 109.47142 * 275.54111 * 20 19 18 48 48 H 1.08991 * 109.47076 * 35.54613 * 20 19 18 49 49 H 1.08998 * 109.46660 * 155.54662 * 20 19 18 50 50 H 0.97001 * 120.00269 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6581 -0.0006 5 6 4.7929 1.5508 -0.0002 6 6 4.7766 2.4344 -1.2491 7 6 4.7766 2.4335 1.2493 8 7 3.6002 -0.6411 0.0045 9 6 2.3171 -1.0936 -0.0007 10 6 1.8855 -2.5032 -0.0005 11 8 0.7004 -2.7763 0.0096 12 7 2.8042 -3.4893 -0.0116 13 6 4.2282 -3.1624 -0.1184 14 6 2.3787 -4.8879 0.0833 15 6 2.1387 -5.4443 -1.3216 16 1 3.0612 -5.3836 -1.8990 17 8 1.1201 -4.6794 -1.9693 18 6 1.6937 -6.9049 -1.2226 19 7 1.5792 -7.4727 -2.5681 20 6 0.3082 -7.3904 -3.2922 21 6 2.6600 -8.0805 -3.1491 22 1 3.6605 -7.7888 -2.8657 23 6 2.4698 -9.0756 -4.0981 24 7 3.4754 -9.4676 -4.8513 25 14 0.7864 -9.8583 -4.3061 26 1 -0.0339 -9.0306 -5.2266 27 1 0.9413 -11.2224 -4.8720 28 1 0.1137 -9.9439 -2.9850 29 1 -0.3633 -0.0009 1.0276 30 1 -0.3633 0.8903 -0.5131 31 1 -0.3633 -0.8896 -0.5145 32 1 5.6944 0.9380 -0.0004 33 1 3.8751 3.0472 -1.2489 34 1 5.6550 3.0798 -1.2491 35 1 4.7883 1.8056 -2.1393 36 1 3.8751 3.0463 1.2495 37 1 4.7882 1.8040 2.1390 38 1 5.6550 3.0789 1.2498 39 1 4.5007 -3.0645 -1.1693 40 1 4.4250 -2.2224 0.3972 41 1 4.8186 -3.9573 0.3375 42 1 1.4562 -4.9487 0.6606 43 1 3.1556 -5.4713 0.5773 44 1 0.2693 -4.6884 -1.5097 45 1 0.7265 -6.9569 -0.7227 46 1 2.4292 -7.4707 -0.6508 47 1 -0.3349 -8.2179 -2.9924 48 1 -0.1825 -6.4457 -3.0585 49 1 0.4966 -7.4466 -4.3643 50 1 3.3424 -10.1627 -5.5146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571601120.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:54 Heat of formation + Delta-G solvation = -29.956468 kcal Electronic energy + Delta-G solvation = -30614.686338 eV Core-core repulsion = 26452.310637 eV Total energy + Delta-G solvation = -4162.375701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.70296 -39.73517 -37.37365 -36.21680 -35.49081 -35.03734 -34.44074 -32.16898 -31.52699 -30.15442 -27.74143 -27.71067 -27.08008 -26.01721 -25.50936 -23.78252 -22.92009 -22.05618 -20.95814 -20.53941 -19.17085 -17.43906 -17.19456 -16.86822 -16.51510 -16.19048 -15.68916 -15.45103 -15.19201 -14.97811 -14.72383 -14.57124 -13.92692 -13.84733 -13.66665 -13.63993 -13.26591 -13.17223 -13.05970 -12.84908 -12.69939 -12.66796 -12.42197 -12.22136 -12.06327 -12.01222 -11.82159 -11.55262 -11.51844 -11.39849 -11.22597 -10.65527 -10.48954 -10.46841 -10.08641 -9.99267 -9.87216 -9.76158 -9.39236 -9.01300 -8.67573 -8.28783 -6.81004 -5.87585 -3.27609 0.93222 1.82397 2.21660 2.98075 3.31148 3.40202 3.51818 3.52154 3.55184 4.27825 4.40497 4.50929 4.53713 4.59126 4.74121 4.91800 4.98039 5.04330 5.10497 5.11795 5.23872 5.28008 5.31524 5.35733 5.39371 5.43264 5.45407 5.53366 5.64107 5.65027 5.69025 5.71730 5.74824 5.85951 5.87216 5.97553 5.98404 6.27329 6.40154 6.46657 6.60903 6.65586 6.76237 6.86037 7.24140 7.47676 8.02880 8.19458 8.32035 8.39740 9.00766 9.78921 10.13223 11.28846 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020280 B = 0.002452 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.309598 B =11415.010422 C =11965.108996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.037 3.963 3 O -0.195 6.195 4 C 0.195 3.805 5 C 0.003 3.997 6 C -0.151 4.151 7 C -0.150 4.150 8 N -0.453 5.453 9 C -0.067 4.067 10 C 0.606 3.394 11 O -0.535 6.535 12 N -0.589 5.589 13 C 0.062 3.938 14 C 0.083 3.917 15 C 0.072 3.928 16 H 0.097 0.903 17 O -0.547 6.547 18 C 0.127 3.873 19 N -0.604 5.604 20 C 0.096 3.904 21 C -0.261 4.261 22 H 0.084 0.916 23 C 0.020 3.980 24 N -0.917 5.917 25 Si 0.905 3.095 26 H -0.289 1.289 27 H -0.309 1.309 28 H -0.275 1.275 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.112 0.888 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.365 0.635 45 H 0.042 0.958 46 H 0.063 0.937 47 H 0.010 0.990 48 H 0.040 0.960 49 H 0.058 0.942 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.363 25.733 14.731 29.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.019 4.019 3 O -0.082 6.082 4 C -0.013 4.013 5 C -0.017 4.017 6 C -0.209 4.209 7 C -0.208 4.208 8 N -0.183 5.183 9 C -0.186 4.186 10 C 0.393 3.607 11 O -0.413 6.413 12 N -0.319 5.319 13 C -0.081 4.081 14 C -0.040 4.040 15 C 0.009 3.991 16 H 0.115 0.885 17 O -0.351 6.351 18 C -0.001 4.001 19 N -0.327 5.327 20 C -0.049 4.049 21 C -0.389 4.389 22 H 0.101 0.899 23 C -0.178 4.178 24 N -0.560 5.560 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.237 1.237 28 H -0.201 1.201 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.129 0.871 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.211 0.789 45 H 0.060 0.940 46 H 0.081 0.919 47 H 0.027 0.973 48 H 0.058 0.942 49 H 0.077 0.923 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.829 25.188 14.176 28.915 hybrid contribution -1.593 -0.327 0.058 1.627 sum -0.763 24.861 14.234 28.657 Atomic orbital electron populations 1.20590 0.82516 1.05513 1.04487 1.23720 0.95092 0.83209 0.99903 1.84280 1.17922 1.36274 1.69706 1.26340 0.84060 0.90459 1.00437 1.19785 0.89870 0.94324 0.97674 1.21904 1.03159 0.99561 0.96270 1.21901 1.03190 0.99541 0.96163 1.70833 1.21349 1.08205 1.17879 1.21516 0.88625 0.95710 1.12776 1.16596 0.85242 0.82296 0.76560 1.90707 1.16122 1.82972 1.51489 1.47450 1.07383 1.05899 1.71191 1.22416 0.79414 1.03555 1.02692 1.22425 1.01600 0.80397 0.99628 1.23165 0.92577 0.92326 0.91059 0.88484 1.86582 1.22511 1.72872 1.53153 1.21354 0.99133 0.91980 0.87629 1.43921 1.09615 1.66412 1.12776 1.21516 0.88143 0.97961 0.97279 1.18894 0.86728 1.13520 1.19776 0.89853 1.25267 0.97039 0.97353 0.98168 1.69784 1.31076 1.32205 1.22972 0.86809 0.84601 0.77307 0.77570 1.21650 1.23749 1.20142 0.89190 0.90309 0.86686 0.86667 0.91834 0.90726 0.91716 0.91838 0.91909 0.90736 0.92889 0.87066 0.91814 0.89924 0.89643 0.78902 0.93961 0.91886 0.97256 0.94186 0.92343 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 9.87 36.01 0.36 -0.34 16 2 C 0.04 0.44 7.44 -35.08 -0.26 0.18 16 3 O -0.19 -2.14 10.73 6.50 0.07 -2.07 16 4 C 0.20 2.02 6.81 -13.08 -0.09 1.93 16 5 C 0.00 0.02 3.39 -91.78 -0.31 -0.29 16 6 C -0.15 -0.84 9.18 37.16 0.34 -0.50 16 7 C -0.15 -0.74 9.18 37.16 0.34 -0.40 16 8 N -0.45 -5.69 7.73 -7.66 -0.06 -5.74 16 9 C -0.07 -0.92 6.71 -83.02 -0.56 -1.48 16 10 C 0.61 9.37 7.24 -12.52 -0.09 9.28 16 11 O -0.53 -8.80 12.93 -7.88 -0.10 -8.90 16 12 N -0.59 -8.63 2.83 -182.85 -0.52 -9.15 16 13 C 0.06 0.79 9.89 59.84 0.59 1.39 16 14 C 0.08 1.19 5.18 -4.04 -0.02 1.17 16 15 C 0.07 1.29 3.48 -26.73 -0.09 1.19 16 16 H 0.10 2.01 8.14 -51.93 -0.42 1.59 16 17 O -0.55 -10.52 10.80 -48.37 -0.52 -11.04 16 18 C 0.13 2.49 5.35 -4.04 -0.02 2.47 16 19 N -0.60 -14.92 2.68 -181.12 -0.49 -15.41 16 20 C 0.10 2.25 8.18 59.85 0.49 2.74 16 21 C -0.26 -7.50 10.09 -15.06 -0.15 -7.66 16 22 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 23 C 0.02 0.60 5.33 -17.43 -0.09 0.50 16 24 N -0.92 -28.96 13.97 55.49 0.78 -28.18 16 25 Si 0.90 23.70 23.94 -169.99 -4.07 19.63 16 26 H -0.29 -7.36 6.47 56.52 0.37 -6.99 16 27 H -0.31 -8.16 7.11 56.52 0.40 -7.76 16 28 H -0.28 -7.05 6.29 56.52 0.36 -6.70 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.11 1.26 6.49 -51.93 -0.34 0.92 16 32 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.11 1.37 4.87 -51.93 -0.25 1.12 16 41 H 0.06 0.70 7.85 -51.93 -0.41 0.29 16 42 H 0.08 1.16 7.48 -51.93 -0.39 0.77 16 43 H 0.09 1.06 7.87 -51.93 -0.41 0.66 16 44 H 0.36 6.24 8.32 45.56 0.38 6.62 16 45 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 46 H 0.06 1.20 8.04 -51.93 -0.42 0.78 16 47 H 0.01 0.23 5.35 -51.93 -0.28 -0.05 16 48 H 0.04 0.83 7.03 -51.93 -0.37 0.47 16 49 H 0.06 1.48 5.51 -51.93 -0.29 1.19 16 50 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 395.61 15.07 5.96 5.96 Total: -1.00 -35.46 395.61 -5.99 -41.45 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.47 Total: 3.27 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 0.43 Total: 10.18 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.29 Total: -58.48 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.55 Total: -22.01 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -4.07 Total: 19.63 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.46 -5.99 -41.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571601120.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.491 kcal (2) G-P(sol) polarization free energy of solvation -35.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds