Wall clock time and date at job start Sat Apr 11 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.34255 * 126.51910 * 2 1 4 4 C 1.34055 * 108.22419 * 180.02562 * 3 2 1 5 5 C 1.50690 * 125.38003 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47328 * 299.97662 * 5 4 3 7 7 C 1.52999 * 109.47301 * 59.97753 * 5 4 3 8 8 N 1.29939 * 109.23927 * 359.74699 * 4 3 2 9 9 C 1.36064 * 108.47943 * 0.40969 * 8 4 3 10 10 C 1.47424 * 126.44886 * 179.86205 * 9 8 4 11 11 O 1.21612 * 119.99833 * 179.17620 * 10 9 8 12 12 N 1.34776 * 119.99942 * 359.17661 * 10 9 8 13 13 C 1.46496 * 119.99984 * 355.72169 * 12 10 9 14 14 C 1.46498 * 119.99879 * 175.72064 * 12 10 9 15 15 C 1.52998 * 109.46980 * 90.00089 * 14 12 10 16 16 H 1.08995 * 109.47641 * 60.00241 * 15 14 12 17 17 O 1.42899 * 109.47151 * 299.99804 * 15 14 12 18 18 C 1.53007 * 109.47198 * 180.02562 * 15 14 12 19 19 N 1.46494 * 109.47004 * 184.99969 * 18 15 14 20 20 C 1.46505 * 119.99811 * 269.99570 * 19 18 15 21 21 C 1.36935 * 120.00227 * 90.00132 * 19 18 15 22 22 H 1.08000 * 119.99991 * 332.98183 * 21 19 18 23 23 C 1.38812 * 120.00100 * 152.70367 * 21 19 18 24 24 N 1.31619 * 120.00044 * 166.11248 * 23 21 19 25 25 Si 1.86804 * 120.00196 * 346.11107 * 23 21 19 26 26 H 1.48501 * 109.46676 * 85.31382 * 25 23 21 27 27 H 1.48496 * 109.47233 * 205.31717 * 25 23 21 28 28 H 1.48498 * 109.46951 * 325.31824 * 25 23 21 29 29 H 1.08994 * 109.46789 * 269.94926 * 1 2 3 30 30 H 1.08991 * 109.47024 * 29.95724 * 1 2 3 31 31 H 1.08999 * 109.46820 * 149.95685 * 1 2 3 32 32 H 1.09004 * 109.47109 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.47031 * 59.99945 * 6 5 4 34 34 H 1.09002 * 109.47261 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.47190 * 300.00121 * 6 5 4 36 36 H 1.09004 * 109.46959 * 299.99994 * 7 5 4 37 37 H 1.08995 * 109.47172 * 59.99914 * 7 5 4 38 38 H 1.09002 * 109.47251 * 179.97438 * 7 5 4 39 39 H 1.09007 * 109.46983 * 273.80210 * 13 12 10 40 40 H 1.09004 * 109.47524 * 33.80359 * 13 12 10 41 41 H 1.09004 * 109.47058 * 153.80491 * 13 12 10 42 42 H 1.08999 * 109.47422 * 330.00019 * 14 12 10 43 43 H 1.08999 * 109.47283 * 210.00022 * 14 12 10 44 44 H 0.96704 * 114.00066 * 299.99805 * 17 15 14 45 45 H 1.09000 * 109.46798 * 64.99650 * 18 15 14 46 46 H 1.08997 * 109.46773 * 304.99943 * 18 15 14 47 47 H 1.09001 * 109.47142 * 275.54111 * 20 19 18 48 48 H 1.08991 * 109.47076 * 35.54613 * 20 19 18 49 49 H 1.08998 * 109.46660 * 155.54662 * 20 19 18 50 50 H 0.97001 * 120.00269 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6581 -0.0006 5 6 4.7929 1.5508 -0.0002 6 6 4.7766 2.4344 -1.2491 7 6 4.7766 2.4335 1.2493 8 7 3.6002 -0.6411 0.0045 9 6 2.3171 -1.0936 -0.0007 10 6 1.8855 -2.5032 -0.0005 11 8 0.7004 -2.7763 0.0096 12 7 2.8042 -3.4893 -0.0116 13 6 4.2282 -3.1624 -0.1184 14 6 2.3787 -4.8879 0.0833 15 6 2.1387 -5.4443 -1.3216 16 1 3.0612 -5.3836 -1.8990 17 8 1.1201 -4.6794 -1.9693 18 6 1.6937 -6.9049 -1.2226 19 7 1.5792 -7.4727 -2.5681 20 6 0.3082 -7.3904 -3.2922 21 6 2.6600 -8.0805 -3.1491 22 1 3.6605 -7.7888 -2.8657 23 6 2.4698 -9.0756 -4.0981 24 7 3.4754 -9.4676 -4.8513 25 14 0.7864 -9.8583 -4.3061 26 1 -0.0339 -9.0306 -5.2266 27 1 0.9413 -11.2224 -4.8720 28 1 0.1137 -9.9439 -2.9850 29 1 -0.3633 -0.0009 1.0276 30 1 -0.3633 0.8903 -0.5131 31 1 -0.3633 -0.8896 -0.5145 32 1 5.6944 0.9380 -0.0004 33 1 3.8751 3.0472 -1.2489 34 1 5.6550 3.0798 -1.2491 35 1 4.7883 1.8056 -2.1393 36 1 3.8751 3.0463 1.2495 37 1 4.7882 1.8040 2.1390 38 1 5.6550 3.0789 1.2498 39 1 4.5007 -3.0645 -1.1693 40 1 4.4250 -2.2224 0.3972 41 1 4.8186 -3.9573 0.3375 42 1 1.4562 -4.9487 0.6606 43 1 3.1556 -5.4713 0.5773 44 1 0.2693 -4.6884 -1.5097 45 1 0.7265 -6.9569 -0.7227 46 1 2.4292 -7.4707 -0.6508 47 1 -0.3349 -8.2179 -2.9924 48 1 -0.1825 -6.4457 -3.0585 49 1 0.4966 -7.4466 -4.3643 50 1 3.3424 -10.1627 -5.5146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571601120.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:54 Heat of formation + Delta-G solvation = -56.197645 kcal Electronic energy + Delta-G solvation = -30615.824241 eV Core-core repulsion = 26452.310637 eV Total energy + Delta-G solvation = -4163.513604 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.57609 -40.91220 -38.90681 -37.02764 -36.73094 -36.31481 -35.62338 -33.67088 -32.95887 -31.64407 -28.83413 -28.29048 -28.11208 -27.77469 -26.91397 -24.90728 -23.92984 -23.20115 -22.28173 -21.88761 -20.13568 -18.93747 -18.49954 -18.08637 -17.72572 -17.29159 -17.13961 -16.82958 -16.46172 -16.23309 -15.97589 -15.60086 -15.27947 -15.17928 -14.77792 -14.58025 -14.38799 -14.35504 -14.14184 -14.07677 -13.98434 -13.77411 -13.74114 -13.23426 -13.18260 -13.06045 -12.73272 -12.56238 -12.47200 -12.30655 -12.15274 -12.09067 -12.04781 -11.99573 -11.99070 -11.52293 -11.50685 -11.33597 -10.97452 -10.72481 -9.94448 -9.57064 -8.79824 -8.16145 -5.52697 0.00614 0.91429 1.32363 1.39668 1.40232 1.49458 1.90914 2.22160 2.41827 2.72760 3.09366 3.31311 3.46426 3.55558 3.68034 3.90953 4.00587 4.04728 4.13489 4.16207 4.24407 4.29770 4.36506 4.45269 4.50852 4.55944 4.56363 4.63254 4.67931 4.73674 4.75276 4.78796 4.85451 4.86955 4.89668 4.96302 4.99639 5.06207 5.08194 5.22209 5.27390 5.29826 5.32901 5.56542 5.84596 6.11143 6.23700 6.46345 6.90211 6.94788 7.06680 7.62188 7.98464 9.03961 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020280 B = 0.002452 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.309598 B =11415.010422 C =11965.108996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.040 3.960 3 O -0.193 6.193 4 C 0.202 3.798 5 C 0.002 3.998 6 C -0.148 4.148 7 C -0.145 4.145 8 N -0.474 5.474 9 C -0.100 4.100 10 C 0.598 3.402 11 O -0.551 6.551 12 N -0.594 5.594 13 C 0.065 3.935 14 C 0.092 3.908 15 C 0.085 3.915 16 H 0.062 0.938 17 O -0.564 6.564 18 C 0.124 3.876 19 N -0.619 5.619 20 C 0.096 3.904 21 C -0.248 4.248 22 H 0.052 0.948 23 C -0.042 4.042 24 N -0.965 5.965 25 Si 0.967 3.033 26 H -0.278 1.278 27 H -0.314 1.314 28 H -0.260 1.260 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.034 0.966 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.375 0.625 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.020 0.980 48 H 0.067 0.933 49 H 0.035 0.965 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.790 27.520 16.448 32.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.016 4.016 3 O -0.081 6.081 4 C -0.007 4.007 5 C -0.018 4.018 6 C -0.206 4.206 7 C -0.203 4.203 8 N -0.203 5.203 9 C -0.219 4.219 10 C 0.387 3.613 11 O -0.430 6.430 12 N -0.324 5.324 13 C -0.077 4.077 14 C -0.031 4.031 15 C 0.022 3.978 16 H 0.080 0.920 17 O -0.370 6.370 18 C -0.002 4.002 19 N -0.343 5.343 20 C -0.049 4.049 21 C -0.378 4.378 22 H 0.070 0.930 23 C -0.236 4.236 24 N -0.611 5.611 25 Si 0.797 3.203 26 H -0.205 1.205 27 H -0.244 1.244 28 H -0.185 1.185 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.141 0.859 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.053 0.947 40 H 0.136 0.864 41 H 0.100 0.900 42 H 0.111 0.889 43 H 0.126 0.874 44 H 0.223 0.777 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.038 0.962 48 H 0.085 0.915 49 H 0.054 0.946 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.341 27.003 15.936 31.357 hybrid contribution -1.162 -0.718 -0.447 1.437 sum -1.503 26.285 15.489 30.547 Atomic orbital electron populations 1.20661 0.80825 1.05765 1.05572 1.24158 0.96127 0.82944 0.98421 1.84311 1.18171 1.35885 1.69704 1.27213 0.84722 0.90416 0.98353 1.20079 0.88347 0.94320 0.99019 1.21903 1.04287 0.99363 0.95005 1.21889 1.04243 0.99315 0.94828 1.70763 1.20962 1.09342 1.19221 1.21483 0.89730 0.95483 1.15160 1.16898 0.85196 0.83099 0.76155 1.90676 1.16630 1.83455 1.52282 1.47551 1.07966 1.05839 1.71046 1.22445 0.78807 1.04683 1.01763 1.22294 1.03003 0.80622 0.97183 1.22848 0.90869 0.91538 0.92545 0.91981 1.86552 1.23330 1.73040 1.54059 1.21582 1.00965 0.92323 0.85377 1.44079 1.08935 1.66528 1.14762 1.21530 0.87735 0.99773 0.95834 1.18852 0.86966 1.12881 1.19084 0.93022 1.25975 1.00808 0.98387 0.98454 1.69927 1.33497 1.33388 1.24331 0.85788 0.80393 0.75894 0.78222 1.20460 1.24374 1.18539 0.87556 0.87974 0.88382 0.85857 0.91995 0.88266 0.93135 0.92035 0.92488 0.88373 0.94700 0.86429 0.89998 0.88910 0.87400 0.77729 0.90979 0.91416 0.96223 0.91483 0.94638 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 9.87 71.24 0.70 -0.54 16 2 C 0.04 0.93 7.44 25.19 0.19 1.12 16 3 O -0.19 -4.03 10.73 0.35 0.00 -4.02 16 4 C 0.20 3.99 6.81 88.39 0.60 4.59 16 5 C 0.00 0.02 3.39 -11.54 -0.04 -0.02 16 6 C -0.15 -1.37 9.18 71.98 0.66 -0.71 16 7 C -0.14 -1.11 9.18 71.98 0.66 -0.45 16 8 N -0.47 -11.73 7.73 -293.04 -2.27 -13.99 16 9 C -0.10 -2.75 6.71 40.41 0.27 -2.48 16 10 C 0.60 18.29 7.24 86.66 0.63 18.92 16 11 O -0.55 -17.80 12.93 8.50 0.11 -17.69 16 12 N -0.59 -17.08 2.83 -850.67 -2.41 -19.48 16 13 C 0.07 1.66 9.89 127.77 1.26 2.92 16 14 C 0.09 2.53 5.18 86.38 0.45 2.98 16 15 C 0.08 2.98 3.48 30.60 0.11 3.09 16 16 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 17 O -0.56 -21.21 10.80 -136.41 -1.47 -22.68 16 18 C 0.12 4.65 5.35 86.38 0.46 5.11 16 19 N -0.62 -30.01 2.68 -726.94 -1.95 -31.96 16 20 C 0.10 4.29 8.18 127.77 1.05 5.34 16 21 C -0.25 -14.49 10.09 84.03 0.85 -13.64 16 22 H 0.05 3.28 8.06 -2.91 -0.02 3.25 16 23 C -0.04 -2.56 5.33 84.86 0.45 -2.11 16 24 N -0.96 -62.61 13.97 21.65 0.30 -62.31 16 25 Si 0.97 48.86 23.94 68.60 1.64 50.50 16 26 H -0.28 -13.44 6.47 99.48 0.64 -12.79 16 27 H -0.31 -16.05 7.11 99.48 0.71 -15.35 16 28 H -0.26 -12.39 6.29 99.48 0.63 -11.77 16 29 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.10 2.08 6.49 -2.39 -0.02 2.07 16 32 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.12 2.87 4.87 -2.39 -0.01 2.85 16 41 H 0.08 1.73 7.85 -2.38 -0.02 1.71 16 42 H 0.09 2.40 7.48 -2.39 -0.02 2.38 16 43 H 0.11 2.47 7.87 -2.39 -0.02 2.45 16 44 H 0.37 12.22 8.32 -74.05 -0.62 11.60 16 45 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 46 H 0.07 2.47 8.04 -2.39 -0.02 2.45 16 47 H 0.02 0.86 5.35 -2.39 -0.01 0.85 16 48 H 0.07 2.62 7.03 -2.39 -0.02 2.61 16 49 H 0.04 1.74 5.51 -2.39 -0.01 1.73 16 50 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -77.94 395.61 2.45 -75.49 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.19 Total: 22.04 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: 8.30 Total: 24.11 kcal Atomic # 7 Polarization: -121.43 SS G_CDS: -6.32 Total: -127.75 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -1.36 Total: -44.39 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 1.64 Total: 50.50 kcal Total: -77.94 2.45 -75.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571601120.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.292 kcal (2) G-P(sol) polarization free energy of solvation -77.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds