Wall clock time and date at job start Sat Apr 11 2020 05:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.61978 * 2 1 4 4 H 1.08991 * 109.49858 * 301.43034 * 3 2 1 5 5 C 1.53048 * 109.49501 * 181.36740 * 3 2 1 6 6 C 1.53034 * 109.53429 * 178.68709 * 5 3 2 7 7 C 1.53189 * 109.31956 * 61.36263 * 6 5 3 8 8 N 1.46929 * 108.77384 * 305.36740 * 7 6 5 9 9 C 1.34779 * 120.62551 * 233.60548 * 8 7 6 10 10 O 1.21284 * 119.99325 * 180.02562 * 9 8 7 11 11 C 1.50696 * 120.00386 * 359.97438 * 9 8 7 12 12 H 1.08999 * 109.46837 * 319.99906 * 11 9 8 13 13 N 1.46896 * 109.47055 * 200.00137 * 11 9 8 14 14 C 1.52999 * 109.46958 * 80.00273 * 11 9 8 15 15 C 1.53001 * 109.46850 * 185.00238 * 14 11 9 16 16 C 1.50696 * 109.46951 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00148 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00189 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99805 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00109 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47544 * 59.99763 * 20 18 16 22 22 H 1.48508 * 109.47179 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47158 * 299.99678 * 20 18 16 24 24 C 1.46926 * 118.73785 * 53.60531 * 8 7 6 25 25 C 1.54094 * 110.67592 * 237.24146 * 2 1 3 26 26 O 1.45703 * 104.00520 * 241.75152 * 25 2 1 27 27 C 1.33763 * 109.47834 * 359.75317 * 26 25 2 28 28 O 1.21519 * 123.06859 * 179.97438 * 27 26 25 29 29 N 1.34005 * 113.86068 * 359.97438 * 27 26 25 30 30 H 1.09000 * 109.47367 * 297.87844 * 1 2 3 31 31 H 1.09001 * 109.47104 * 57.88023 * 1 2 3 32 32 H 1.08999 * 109.47296 * 177.87962 * 1 2 3 33 33 H 1.08997 * 109.45701 * 298.70507 * 5 3 2 34 34 H 1.08995 * 109.45734 * 58.67762 * 5 3 2 35 35 H 1.09001 * 109.49802 * 181.32116 * 6 5 3 36 36 H 1.09008 * 109.49971 * 301.41155 * 6 5 3 37 37 H 1.09003 * 109.58259 * 65.15327 * 7 6 5 38 38 H 1.08996 * 109.58827 * 185.57382 * 7 6 5 39 39 H 1.00897 * 111.00249 * 300.00067 * 13 11 9 40 40 H 1.00906 * 111.00423 * 63.95423 * 13 11 9 41 41 H 1.09002 * 109.47090 * 304.99470 * 14 11 9 42 42 H 1.08993 * 109.47496 * 64.99866 * 14 11 9 43 43 H 1.09001 * 109.47165 * 299.99593 * 15 14 11 44 44 H 1.09000 * 109.47768 * 59.99694 * 15 14 11 45 45 H 0.96994 * 120.00306 * 180.02562 * 19 18 16 46 46 H 1.09005 * 109.58342 * 186.60424 * 24 8 7 47 47 H 1.08992 * 109.58886 * 66.18220 * 24 8 7 48 48 H 1.08994 * 110.73204 * 123.01461 * 25 2 1 49 49 H 1.09002 * 110.30846 * 0.27562 * 25 2 1 50 50 H 0.97001 * 125.55884 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0688 1.4320 0.0000 4 1 1.6955 1.9612 -0.8767 5 6 3.5986 1.4021 -0.0344 6 6 4.1378 2.8339 -0.0675 7 6 3.6970 3.5709 1.2011 8 7 2.2352 3.4791 1.3176 9 6 1.4871 4.5904 1.4657 10 8 0.2813 4.5012 1.5612 11 6 2.1489 5.9434 1.5138 12 1 3.0678 5.8778 2.0964 13 7 1.2393 6.9113 2.1413 14 6 2.4781 6.4009 0.0914 15 6 3.2605 7.7146 0.1466 16 6 3.5853 8.1649 -1.2544 17 1 3.2661 7.5731 -2.0995 18 6 4.2901 9.3325 -1.4572 19 7 4.6784 10.0534 -0.4281 20 14 4.6922 9.8910 -3.1938 21 1 3.4320 10.0963 -3.9520 22 1 5.4506 11.1667 -3.1404 23 1 5.5132 8.8545 -3.8696 24 6 1.6046 2.1529 1.2695 25 6 2.0741 -0.7801 -1.2124 26 8 2.8246 -1.8781 -0.6173 27 6 2.7619 -1.7902 0.7160 28 8 3.3038 -2.5845 1.4590 29 7 2.0471 -0.7462 1.1574 30 1 -0.3634 0.4805 0.9084 31 1 -0.3633 0.5464 -0.8704 32 1 -0.3634 -1.0269 -0.0380 33 1 3.9719 0.8939 0.8546 34 1 3.9314 0.8683 -0.9245 35 1 5.2265 2.8117 -0.1157 36 1 3.7449 3.3505 -0.9433 37 1 4.1627 3.1096 2.0720 38 1 3.9935 4.6178 1.1372 39 1 0.3793 6.9901 1.6196 40 1 1.0576 6.6659 3.1030 41 1 3.0805 5.6399 -0.4047 42 1 1.5532 6.5519 -0.4650 43 1 2.6582 8.4756 0.6427 44 1 4.1855 7.5636 0.7030 45 1 5.1739 10.8750 -0.5708 46 1 0.5204 2.2643 1.2507 47 1 1.8995 1.5760 2.1459 48 1 2.7299 -0.1505 -1.8136 49 1 1.2512 -1.1628 -1.8163 50 1 1.8917 -0.5221 2.0883 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576501672.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:07 Heat of formation + Delta-G solvation = -118.532118 kcal Electronic energy + Delta-G solvation = -31249.525323 eV Core-core repulsion = 27083.308693 eV Total energy + Delta-G solvation = -4166.216629 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.39616 -40.40244 -38.36229 -37.32837 -35.89714 -35.35866 -33.01880 -32.84466 -32.12267 -30.33145 -30.06321 -27.86533 -26.70512 -25.33282 -24.34939 -23.24250 -22.54979 -21.80804 -20.73626 -20.35492 -18.87996 -18.40457 -17.65042 -17.10888 -16.57350 -16.46233 -16.05493 -15.56439 -15.51002 -15.02898 -14.93095 -14.55740 -14.47783 -14.42184 -14.38713 -14.09775 -13.65841 -13.51843 -13.19195 -13.16834 -12.91572 -12.61746 -12.34744 -12.06585 -11.91593 -11.68987 -11.60406 -11.34656 -11.10310 -11.04055 -10.94317 -10.91708 -10.77800 -10.71324 -10.60956 -10.15018 -9.86057 -9.79925 -9.43009 -9.07172 -8.79171 -8.41167 -8.26289 -5.98678 -4.01317 2.30743 2.38840 2.61471 2.87196 3.08093 3.31757 3.37184 3.38729 3.51951 3.93038 4.00824 4.41030 4.43297 4.46241 4.63702 4.69142 4.73997 4.76591 4.83304 4.89422 4.93371 4.96877 5.15664 5.19299 5.23654 5.31591 5.36650 5.40943 5.44158 5.51568 5.59494 5.62424 5.71736 5.75521 5.78055 6.03511 6.31272 6.36867 6.38714 6.57456 6.87738 7.00070 7.23197 7.42662 7.69375 7.72523 7.73039 7.89632 8.07309 8.15142 8.42367 9.06376 9.62114 11.12124 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015676 B = 0.002716 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.776022 B =10304.950817 C =11181.372106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.129 3.871 3 C -0.105 4.105 4 H 0.097 0.903 5 C -0.120 4.120 6 C -0.134 4.134 7 C 0.100 3.900 8 N -0.610 5.610 9 C 0.487 3.513 10 O -0.554 6.554 11 C 0.077 3.923 12 H 0.098 0.902 13 N -0.807 5.807 14 C -0.095 4.095 15 C 0.032 3.968 16 C -0.524 4.524 17 H 0.051 0.949 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.117 3.883 25 C 0.046 3.954 26 O -0.327 6.327 27 C 0.648 3.352 28 O -0.527 6.527 29 N -0.724 5.724 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.102 0.898 39 H 0.348 0.652 40 H 0.334 0.666 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.035 0.965 44 H 0.012 0.988 45 H 0.260 0.740 46 H 0.095 0.905 47 H 0.061 0.939 48 H 0.113 0.887 49 H 0.109 0.891 50 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.320 -20.741 1.754 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.041 3.959 3 C -0.125 4.125 4 H 0.115 0.885 5 C -0.158 4.158 6 C -0.172 4.172 7 C -0.023 4.023 8 N -0.344 5.344 9 C 0.275 3.725 10 O -0.432 6.432 11 C -0.038 4.038 12 H 0.116 0.884 13 N -0.335 5.335 14 C -0.134 4.134 15 C -0.005 4.005 16 C -0.562 4.562 17 H 0.069 0.931 18 C -0.142 4.142 19 N -0.531 5.531 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.007 4.007 25 C -0.029 4.029 26 O -0.237 6.237 27 C 0.400 3.600 28 O -0.412 6.412 29 N -0.397 5.397 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.120 0.880 39 H 0.162 0.838 40 H 0.146 0.854 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.031 0.969 45 H 0.070 0.930 46 H 0.113 0.887 47 H 0.079 0.921 48 H 0.131 0.869 49 H 0.127 0.873 50 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -5.859 -20.678 1.785 21.566 hybrid contribution -0.475 -0.290 -0.462 0.723 sum -6.333 -20.968 1.323 21.944 Atomic orbital electron populations 1.22205 0.91700 1.03367 1.04369 1.21722 0.95936 0.92637 0.85607 1.21914 0.96983 0.92871 1.00726 0.88489 1.21685 0.93630 0.97746 1.02729 1.21901 1.01639 0.94944 0.98723 1.21921 0.79250 1.03269 0.97860 1.48207 1.07534 1.05777 1.72851 1.22810 0.87806 0.87697 0.74189 1.90630 1.14657 1.87122 1.50811 1.21883 0.96469 0.84814 1.00677 0.88406 1.59004 1.20115 1.48333 1.06010 1.21694 1.00794 1.01076 0.89810 1.19002 0.94432 0.90432 0.96603 1.21214 1.35145 1.07172 0.92695 0.93075 1.24983 0.96011 0.96657 0.96581 1.69955 1.38501 1.15020 1.29608 0.86723 0.78439 0.77962 0.85222 1.20329 1.21318 1.20350 1.21514 0.99706 0.83517 0.95946 1.24535 0.96803 0.86461 0.95068 1.87269 1.69001 1.48418 1.18988 1.18473 0.78488 0.81439 0.81567 1.91092 1.50558 1.44823 1.54693 1.46139 1.54980 1.28683 1.09868 0.90709 0.90062 0.91343 0.91450 0.91267 0.89981 0.90562 0.91443 0.87961 0.83832 0.85444 0.92697 0.92878 0.94694 0.96938 0.92989 0.88657 0.92101 0.86910 0.87332 0.72292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 8.39 37.16 0.31 -0.41 16 2 C 0.13 0.72 0.78 -130.92 -0.10 0.61 16 3 C -0.10 -0.71 1.76 -90.50 -0.16 -0.87 16 4 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 5 C -0.12 -0.88 4.68 -26.69 -0.12 -1.00 16 6 C -0.13 -1.17 6.08 -26.62 -0.16 -1.33 16 7 C 0.10 0.99 5.76 -3.71 -0.02 0.97 16 8 N -0.61 -6.80 2.97 -172.77 -0.51 -7.31 16 9 C 0.49 7.01 6.94 -10.99 -0.08 6.93 16 10 O -0.55 -9.28 15.66 5.55 0.09 -9.19 16 11 C 0.08 1.21 2.29 -68.87 -0.16 1.05 16 12 H 0.10 1.46 6.80 -51.93 -0.35 1.11 16 13 N -0.81 -12.93 8.44 -5.66 -0.05 -12.97 16 14 C -0.10 -1.79 4.45 -26.73 -0.12 -1.91 16 15 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 16 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 17 H 0.05 1.34 7.74 -52.49 -0.41 0.94 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 20 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.12 1.02 5.18 -3.71 -0.02 1.00 16 25 C 0.05 0.25 6.97 37.73 0.26 0.51 16 26 O -0.33 -3.14 11.09 -37.81 -0.42 -3.56 16 27 C 0.65 6.94 9.14 53.71 0.49 7.43 16 28 O -0.53 -7.88 18.04 -19.12 -0.35 -8.23 16 29 N -0.72 -5.12 4.63 -52.01 -0.24 -5.36 16 30 H 0.07 0.38 6.83 -51.93 -0.35 0.02 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.54 7.66 -51.93 -0.40 0.14 16 34 H 0.07 0.46 6.22 -51.93 -0.32 0.14 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 1.18 4.83 -51.93 -0.25 0.92 16 39 H 0.35 5.64 8.58 -39.29 -0.34 5.31 16 40 H 0.33 4.64 9.06 -39.29 -0.36 4.28 16 41 H 0.05 0.96 6.96 -51.93 -0.36 0.59 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.03 0.93 7.75 -51.93 -0.40 0.53 16 44 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.10 0.94 5.79 -51.93 -0.30 0.64 16 47 H 0.06 0.47 6.96 -51.93 -0.36 0.10 16 48 H 0.11 0.48 6.14 -51.93 -0.32 0.17 16 49 H 0.11 0.36 7.72 -51.93 -0.40 -0.04 16 50 H 0.43 2.60 8.06 -40.82 -0.33 2.28 16 LS Contribution 387.39 15.07 5.84 5.84 Total: -1.00 -34.57 387.39 -8.12 -42.69 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -7.77 Total: 6.81 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -0.42 Total: 0.66 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.07 Total: -51.12 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.68 Total: -20.98 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.57 -8.12 -42.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576501672.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.838 kcal (2) G-P(sol) polarization free energy of solvation -34.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds