Wall clock time and date at job start Sat Apr 11 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.61978 * 2 1 4 4 H 1.08991 * 109.49858 * 301.43034 * 3 2 1 5 5 C 1.53048 * 109.49501 * 181.36740 * 3 2 1 6 6 C 1.53034 * 109.53429 * 178.68709 * 5 3 2 7 7 C 1.53189 * 109.31956 * 61.36263 * 6 5 3 8 8 N 1.46929 * 108.77384 * 305.36740 * 7 6 5 9 9 C 1.34779 * 120.62551 * 233.60548 * 8 7 6 10 10 O 1.21284 * 119.99325 * 180.02562 * 9 8 7 11 11 C 1.50696 * 120.00386 * 359.97438 * 9 8 7 12 12 H 1.08999 * 109.46837 * 319.99906 * 11 9 8 13 13 N 1.46896 * 109.47055 * 200.00137 * 11 9 8 14 14 C 1.52999 * 109.46958 * 80.00273 * 11 9 8 15 15 C 1.53001 * 109.46850 * 185.00238 * 14 11 9 16 16 C 1.50696 * 109.46951 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00148 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00189 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99805 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00109 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47544 * 59.99763 * 20 18 16 22 22 H 1.48508 * 109.47179 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47158 * 299.99678 * 20 18 16 24 24 C 1.46926 * 118.73785 * 53.60531 * 8 7 6 25 25 C 1.54094 * 110.67592 * 237.24146 * 2 1 3 26 26 O 1.45703 * 104.00520 * 241.75152 * 25 2 1 27 27 C 1.33763 * 109.47834 * 359.75317 * 26 25 2 28 28 O 1.21519 * 123.06859 * 179.97438 * 27 26 25 29 29 N 1.34005 * 113.86068 * 359.97438 * 27 26 25 30 30 H 1.09000 * 109.47367 * 297.87844 * 1 2 3 31 31 H 1.09001 * 109.47104 * 57.88023 * 1 2 3 32 32 H 1.08999 * 109.47296 * 177.87962 * 1 2 3 33 33 H 1.08997 * 109.45701 * 298.70507 * 5 3 2 34 34 H 1.08995 * 109.45734 * 58.67762 * 5 3 2 35 35 H 1.09001 * 109.49802 * 181.32116 * 6 5 3 36 36 H 1.09008 * 109.49971 * 301.41155 * 6 5 3 37 37 H 1.09003 * 109.58259 * 65.15327 * 7 6 5 38 38 H 1.08996 * 109.58827 * 185.57382 * 7 6 5 39 39 H 1.00897 * 111.00249 * 300.00067 * 13 11 9 40 40 H 1.00906 * 111.00423 * 63.95423 * 13 11 9 41 41 H 1.09002 * 109.47090 * 304.99470 * 14 11 9 42 42 H 1.08993 * 109.47496 * 64.99866 * 14 11 9 43 43 H 1.09001 * 109.47165 * 299.99593 * 15 14 11 44 44 H 1.09000 * 109.47768 * 59.99694 * 15 14 11 45 45 H 0.96994 * 120.00306 * 180.02562 * 19 18 16 46 46 H 1.09005 * 109.58342 * 186.60424 * 24 8 7 47 47 H 1.08992 * 109.58886 * 66.18220 * 24 8 7 48 48 H 1.08994 * 110.73204 * 123.01461 * 25 2 1 49 49 H 1.09002 * 110.30846 * 0.27562 * 25 2 1 50 50 H 0.97001 * 125.55884 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0688 1.4320 0.0000 4 1 1.6955 1.9612 -0.8767 5 6 3.5986 1.4021 -0.0344 6 6 4.1378 2.8339 -0.0675 7 6 3.6970 3.5709 1.2011 8 7 2.2352 3.4791 1.3176 9 6 1.4871 4.5904 1.4657 10 8 0.2813 4.5012 1.5612 11 6 2.1489 5.9434 1.5138 12 1 3.0678 5.8778 2.0964 13 7 1.2393 6.9113 2.1413 14 6 2.4781 6.4009 0.0914 15 6 3.2605 7.7146 0.1466 16 6 3.5853 8.1649 -1.2544 17 1 3.2661 7.5731 -2.0995 18 6 4.2901 9.3325 -1.4572 19 7 4.6784 10.0534 -0.4281 20 14 4.6922 9.8910 -3.1938 21 1 3.4320 10.0963 -3.9520 22 1 5.4506 11.1667 -3.1404 23 1 5.5132 8.8545 -3.8696 24 6 1.6046 2.1529 1.2695 25 6 2.0741 -0.7801 -1.2124 26 8 2.8246 -1.8781 -0.6173 27 6 2.7619 -1.7902 0.7160 28 8 3.3038 -2.5845 1.4590 29 7 2.0471 -0.7462 1.1574 30 1 -0.3634 0.4805 0.9084 31 1 -0.3633 0.5464 -0.8704 32 1 -0.3634 -1.0269 -0.0380 33 1 3.9719 0.8939 0.8546 34 1 3.9314 0.8683 -0.9245 35 1 5.2265 2.8117 -0.1157 36 1 3.7449 3.3505 -0.9433 37 1 4.1627 3.1096 2.0720 38 1 3.9935 4.6178 1.1372 39 1 0.3793 6.9901 1.6196 40 1 1.0576 6.6659 3.1030 41 1 3.0805 5.6399 -0.4047 42 1 1.5532 6.5519 -0.4650 43 1 2.6582 8.4756 0.6427 44 1 4.1855 7.5636 0.7030 45 1 5.1739 10.8750 -0.5708 46 1 0.5204 2.2643 1.2507 47 1 1.8995 1.5760 2.1459 48 1 2.7299 -0.1505 -1.8136 49 1 1.2512 -1.1628 -1.8163 50 1 1.8917 -0.5221 2.0883 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576501672.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:05 Heat of formation + Delta-G solvation = -144.692721 kcal Electronic energy + Delta-G solvation = -31250.659732 eV Core-core repulsion = 27083.308693 eV Total energy + Delta-G solvation = -4167.351038 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -43.05092 -41.43280 -39.24224 -38.19559 -36.90479 -36.55582 -34.81221 -33.79214 -32.80681 -31.92584 -30.87246 -28.56468 -27.99625 -26.46634 -25.28323 -24.43086 -23.35187 -22.55811 -22.08277 -21.33212 -19.88816 -19.09099 -18.69056 -18.27072 -17.88001 -17.33093 -17.20120 -16.86940 -16.42723 -16.34466 -15.81269 -15.69005 -15.30717 -15.20128 -15.14048 -14.99647 -14.72262 -14.34763 -14.25905 -14.06374 -13.81909 -13.79114 -13.46372 -13.40259 -13.11922 -12.75652 -12.55860 -12.49572 -12.32878 -12.21886 -12.07577 -11.83120 -11.79625 -11.69496 -11.65573 -11.57611 -11.41423 -11.19998 -10.96545 -10.46815 -10.43681 -9.70839 -9.60280 -8.11765 -6.21871 1.43272 1.45893 1.47042 1.53627 1.60579 1.67822 1.93434 2.46111 2.53407 3.02657 3.21667 3.34328 3.43164 3.55781 3.67691 3.80667 3.96704 4.01057 4.08465 4.09694 4.15107 4.27089 4.31347 4.38843 4.48348 4.56021 4.58201 4.71819 4.76597 4.77710 4.79602 4.83800 4.94000 4.97284 5.09086 5.10932 5.20935 5.25984 5.37884 5.49566 5.59277 5.75070 5.86146 6.00623 6.09250 6.20696 6.29352 6.32412 6.51189 6.96976 7.00135 7.04772 7.46396 8.99213 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015676 B = 0.002716 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.776022 B =10304.950817 C =11181.372106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 C -0.096 4.096 4 H 0.101 0.899 5 C -0.116 4.116 6 C -0.131 4.131 7 C 0.095 3.905 8 N -0.601 5.601 9 C 0.491 3.509 10 O -0.579 6.579 11 C 0.083 3.917 12 H 0.105 0.895 13 N -0.820 5.820 14 C -0.078 4.078 15 C 0.041 3.959 16 C -0.541 4.541 17 H 0.057 0.943 18 C 0.003 3.997 19 N -0.930 5.930 20 Si 0.957 3.043 21 H -0.271 1.271 22 H -0.287 1.287 23 H -0.264 1.264 24 C 0.113 3.887 25 C 0.042 3.958 26 O -0.342 6.342 27 C 0.648 3.352 28 O -0.579 6.579 29 N -0.709 5.709 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.345 0.655 40 H 0.346 0.654 41 H 0.069 0.931 42 H 0.042 0.958 43 H 0.003 0.997 44 H -0.007 1.007 45 H 0.261 0.739 46 H 0.088 0.912 47 H 0.075 0.925 48 H 0.128 0.872 49 H 0.135 0.865 50 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.616 -22.030 0.213 23.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.049 3.951 3 C -0.116 4.116 4 H 0.119 0.881 5 C -0.154 4.154 6 C -0.169 4.169 7 C -0.027 4.027 8 N -0.333 5.333 9 C 0.278 3.722 10 O -0.459 6.459 11 C -0.033 4.033 12 H 0.123 0.877 13 N -0.349 5.349 14 C -0.117 4.117 15 C 0.004 3.996 16 C -0.579 4.579 17 H 0.076 0.924 18 C -0.195 4.195 19 N -0.571 5.571 20 Si 0.782 3.218 21 H -0.196 1.196 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.009 4.009 25 C -0.032 4.032 26 O -0.252 6.252 27 C 0.401 3.599 28 O -0.467 6.467 29 N -0.381 5.381 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.021 0.979 44 H 0.011 0.989 45 H 0.070 0.930 46 H 0.106 0.894 47 H 0.093 0.907 48 H 0.146 0.854 49 H 0.153 0.847 50 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -6.159 -21.979 0.227 22.827 hybrid contribution -0.382 0.140 0.026 0.407 sum -6.541 -21.839 0.252 22.799 Atomic orbital electron populations 1.22211 0.90476 1.03946 1.04785 1.21763 0.96655 0.91558 0.85120 1.21832 0.96670 0.93315 0.99759 0.88096 1.21655 0.93771 0.96763 1.03176 1.21872 1.02200 0.95465 0.97345 1.22045 0.78458 1.02752 0.99487 1.48186 1.07960 1.05965 1.71197 1.22293 0.87378 0.87881 0.74619 1.90622 1.15514 1.87442 1.52338 1.21659 0.96956 0.85913 0.98742 0.87749 1.58980 1.20069 1.49018 1.06855 1.21386 0.99499 0.98705 0.92071 1.18803 0.93635 0.92322 0.94848 1.21691 1.34767 1.07400 0.94059 0.92430 1.25878 0.95958 0.96885 1.00802 1.70094 1.39455 1.15519 1.31997 0.85634 0.78457 0.77620 0.80125 1.19625 1.21258 1.18903 1.21699 0.99201 0.82345 0.97659 1.24905 0.97666 0.85730 0.94898 1.87240 1.69588 1.49907 1.18415 1.18552 0.78215 0.81431 0.81686 1.91047 1.52789 1.46819 1.56093 1.46098 1.53728 1.27640 1.10639 0.91095 0.88851 0.90756 0.91830 0.90035 0.89154 0.91577 0.89690 0.89651 0.84097 0.84132 0.91200 0.93959 0.97883 0.98860 0.93003 0.89400 0.90677 0.85416 0.84734 0.71677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 8.39 71.98 0.60 -0.38 16 2 C 0.14 1.14 0.78 3.86 0.00 1.15 16 3 C -0.10 -1.04 1.76 -10.71 -0.02 -1.05 16 4 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 5 C -0.12 -1.39 4.68 30.62 0.14 -1.25 16 6 C -0.13 -2.00 6.08 30.67 0.19 -1.81 16 7 C 0.09 1.73 5.76 86.36 0.50 2.23 16 8 N -0.60 -12.40 2.97 -818.91 -2.43 -14.83 16 9 C 0.49 13.66 6.94 87.66 0.61 14.27 16 10 O -0.58 -18.87 15.66 -3.04 -0.05 -18.92 16 11 C 0.08 2.58 2.29 44.17 0.10 2.68 16 12 H 0.10 3.11 6.80 -2.39 -0.02 3.09 16 13 N -0.82 -26.57 8.44 -171.82 -1.45 -28.02 16 14 C -0.08 -2.94 4.45 30.59 0.14 -2.81 16 15 C 0.04 2.05 4.86 29.85 0.15 2.19 16 16 C -0.54 -29.49 9.11 25.60 0.23 -29.25 16 17 H 0.06 2.99 7.74 -2.91 -0.02 2.97 16 18 C 0.00 0.15 5.46 84.66 0.46 0.61 16 19 N -0.93 -55.56 13.29 21.45 0.28 -55.27 16 20 Si 0.96 43.03 29.54 68.60 2.03 45.06 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 24 C 0.11 1.73 5.18 86.36 0.45 2.17 16 25 C 0.04 0.32 6.97 72.35 0.50 0.83 16 26 O -0.34 -5.93 11.09 -47.24 -0.52 -6.46 16 27 C 0.65 13.14 9.14 129.91 1.19 14.32 16 28 O -0.58 -17.33 18.04 19.63 0.35 -16.98 16 29 N -0.71 -8.68 4.63 -550.19 -2.55 -11.22 16 30 H 0.07 0.54 6.83 -2.39 -0.02 0.52 16 31 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.06 0.85 7.66 -2.39 -0.02 0.84 16 34 H 0.08 0.82 6.22 -2.39 -0.01 0.81 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.09 1.88 4.83 -2.39 -0.01 1.87 16 39 H 0.35 11.38 8.58 -89.70 -0.77 10.61 16 40 H 0.35 9.61 9.06 -89.69 -0.81 8.79 16 41 H 0.07 2.39 6.96 -2.39 -0.02 2.37 16 42 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.00 0.15 7.75 -2.39 -0.02 0.13 16 44 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 45 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 46 H 0.09 1.56 5.79 -2.38 -0.01 1.54 16 47 H 0.08 0.96 6.96 -2.39 -0.02 0.94 16 48 H 0.13 0.63 6.14 -2.39 -0.01 0.62 16 49 H 0.13 0.39 7.72 -2.39 -0.02 0.37 16 50 H 0.44 4.49 8.06 -92.71 -0.75 3.74 16 Total: -1.00 -76.00 387.39 -0.43 -76.43 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -1.33 Total: 26.31 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 5.24 Total: 3.90 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -6.14 Total: -109.35 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -0.22 Total: -42.35 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -76.00 -0.43 -76.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576501672.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.267 kcal (2) G-P(sol) polarization free energy of solvation -75.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds