Wall clock time and date at job start Sat Apr 11 2020 05:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 110.50288 * 2 1 4 4 H 1.08995 * 109.49894 * 174.23725 * 3 2 1 5 5 C 1.53046 * 109.49349 * 294.29668 * 3 2 1 6 6 C 1.53046 * 109.53579 * 181.31520 * 5 3 2 7 7 C 1.53187 * 109.31363 * 298.63645 * 6 5 3 8 8 N 1.46928 * 108.77625 * 54.63376 * 7 6 5 9 9 C 1.34775 * 120.62932 * 126.41524 * 8 7 6 10 10 O 1.21288 * 120.00275 * 179.97438 * 9 8 7 11 11 C 1.50700 * 120.00217 * 359.97291 * 9 8 7 12 12 H 1.09007 * 109.47035 * 40.00577 * 11 9 8 13 13 N 1.46902 * 109.47356 * 160.00219 * 11 9 8 14 14 C 1.52998 * 109.47571 * 280.00634 * 11 9 8 15 15 C 1.52995 * 109.47607 * 175.00059 * 14 11 9 16 16 C 1.50696 * 109.47332 * 180.02562 * 15 14 11 17 17 H 1.07998 * 120.00153 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99994 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99700 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99990 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47556 * 59.99375 * 20 18 16 22 22 H 1.48502 * 109.47191 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46970 * 299.99521 * 20 18 16 24 24 C 1.46921 * 118.73936 * 306.39044 * 8 7 6 25 25 C 1.54086 * 110.56546 * 237.25467 * 2 1 3 26 26 O 1.46042 * 103.84622 * 241.23760 * 25 2 1 27 27 C 1.33770 * 109.50897 * 0.12237 * 26 25 2 28 28 O 1.21513 * 123.07517 * 179.97438 * 27 26 25 29 29 N 1.34007 * 113.85961 * 359.91698 * 27 26 25 30 30 H 1.08994 * 109.47280 * 60.00681 * 1 2 3 31 31 H 1.09005 * 109.46804 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47345 * 300.00065 * 1 2 3 33 33 H 1.08993 * 109.45866 * 301.33695 * 5 3 2 34 34 H 1.09000 * 109.45949 * 61.30031 * 5 3 2 35 35 H 1.09001 * 109.49519 * 58.58791 * 6 5 3 36 36 H 1.08996 * 109.49601 * 178.68448 * 6 5 3 37 37 H 1.09000 * 109.59097 * 294.84726 * 7 6 5 38 38 H 1.09002 * 109.70548 * 174.49212 * 7 6 5 39 39 H 1.00899 * 110.99857 * 296.05387 * 13 11 9 40 40 H 1.00900 * 110.99881 * 60.00024 * 13 11 9 41 41 H 1.09004 * 109.46778 * 294.99877 * 14 11 9 42 42 H 1.08996 * 109.47096 * 54.99551 * 14 11 9 43 43 H 1.09004 * 109.46904 * 299.99742 * 15 14 11 44 44 H 1.08996 * 109.47307 * 59.99621 * 15 14 11 45 45 H 0.97001 * 119.99753 * 180.02562 * 19 18 16 46 46 H 1.08996 * 109.58905 * 293.82203 * 24 8 7 47 47 H 1.09008 * 109.58585 * 173.39403 * 24 8 7 48 48 H 1.08997 * 110.52454 * 359.90810 * 25 2 1 49 49 H 1.08998 * 110.52054 * 122.64865 * 25 2 1 50 50 H 0.96998 * 125.56420 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0659 1.4331 0.0000 4 1 3.1508 1.4158 0.1032 5 6 1.6888 2.1194 -1.3149 6 6 2.2525 3.5422 -1.3297 7 6 1.6412 4.3413 -0.1746 8 7 1.8744 3.6128 1.0799 9 6 2.4637 4.2215 2.1281 10 8 2.6503 3.6095 3.1585 11 6 2.8909 5.6627 2.0199 12 1 2.1332 6.2264 1.4756 13 7 3.0493 6.2289 3.3662 14 6 4.2231 5.7451 1.2720 15 6 4.5950 7.2128 1.0527 16 6 5.9068 7.2939 0.3154 17 1 6.4238 6.3890 0.0320 18 6 6.4476 8.5233 0.0036 19 7 5.8182 9.6252 0.3492 20 14 8.0740 8.6238 -0.9096 21 1 7.9467 7.9441 -2.2238 22 1 8.4349 10.0485 -1.1226 23 1 9.1331 7.9588 -0.1088 24 6 1.4525 2.2084 1.1702 25 6 2.0713 -0.7803 -1.2134 26 8 2.8329 -1.8732 -0.6147 27 6 2.7695 -1.7839 0.7185 28 8 3.3182 -2.5724 1.4628 29 7 2.0467 -0.7448 1.1585 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.1034 1.5558 -2.1506 34 1 0.6033 2.1579 -1.4061 35 1 3.3357 3.5055 -1.2137 36 1 2.0035 4.0223 -2.2760 37 1 0.5695 4.4562 -0.3365 38 1 2.1098 5.3239 -0.1190 39 1 2.1682 6.2451 3.8576 40 1 3.7469 5.7232 3.8913 41 1 5.0006 5.2572 1.8599 42 1 4.1298 5.2458 0.3076 43 1 3.8175 7.7007 0.4647 44 1 4.6883 7.7120 2.0171 45 1 6.1984 10.4901 0.1295 46 1 0.3654 2.1493 1.1179 47 1 1.7988 1.7827 2.1121 48 1 1.2498 -1.1692 -1.8150 49 1 2.7211 -0.1463 -1.8165 50 1 1.8895 -0.5206 2.0890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576501673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:12 Heat of formation + Delta-G solvation = -118.308807 kcal Electronic energy + Delta-G solvation = -31188.730113 eV Core-core repulsion = 27022.523167 eV Total energy + Delta-G solvation = -4166.206946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.27904 -40.43962 -38.47139 -37.28440 -35.87532 -35.34861 -33.29417 -32.84961 -31.86878 -30.24398 -29.96820 -27.82520 -26.72876 -25.50669 -24.44015 -23.24900 -22.45404 -22.17763 -20.48714 -20.07930 -18.90569 -18.35833 -17.55814 -17.12441 -16.77029 -16.47099 -16.01184 -15.54077 -15.49892 -15.25508 -14.94804 -14.54944 -14.51081 -14.43844 -14.29489 -13.95784 -13.74807 -13.41574 -13.30684 -13.20745 -12.83904 -12.63213 -12.33895 -12.06164 -11.98665 -11.66519 -11.52723 -11.32209 -11.14448 -11.05761 -10.98505 -10.90796 -10.79530 -10.70525 -10.60097 -10.14205 -9.85331 -9.76184 -9.42163 -9.06357 -8.78062 -8.40394 -8.25530 -5.98058 -4.00524 2.33119 2.43459 2.62253 2.87715 3.07654 3.32791 3.37959 3.40244 3.52940 3.93605 4.04901 4.29866 4.45901 4.49235 4.56960 4.66640 4.68701 4.75054 4.81262 4.87075 4.93438 4.94573 5.07950 5.13328 5.25620 5.27658 5.36936 5.39257 5.42807 5.45075 5.55094 5.62143 5.70995 5.75001 5.75699 6.00750 6.31629 6.39097 6.42271 6.58947 6.91252 7.00864 7.23358 7.43391 7.69900 7.73234 7.77789 7.90407 8.07938 8.16384 8.43366 9.07131 9.62937 11.12714 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.002786 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.345907 B =10046.490543 C =10659.960048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 C -0.106 4.106 4 H 0.088 0.912 5 C -0.117 4.117 6 C -0.136 4.136 7 C 0.100 3.900 8 N -0.611 5.611 9 C 0.486 3.514 10 O -0.553 6.553 11 C 0.078 3.922 12 H 0.098 0.902 13 N -0.807 5.807 14 C -0.096 4.096 15 C 0.033 3.967 16 C -0.524 4.524 17 H 0.051 0.949 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.114 3.886 25 C 0.047 3.953 26 O -0.329 6.329 27 C 0.647 3.353 28 O -0.524 6.524 29 N -0.726 5.726 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.334 0.666 40 H 0.348 0.652 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.012 0.988 44 H 0.035 0.965 45 H 0.260 0.740 46 H 0.071 0.929 47 H 0.088 0.912 48 H 0.110 0.890 49 H 0.112 0.888 50 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.997 -16.783 -5.422 24.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 C -0.127 4.127 4 H 0.106 0.894 5 C -0.155 4.155 6 C -0.174 4.174 7 C -0.023 4.023 8 N -0.345 5.345 9 C 0.274 3.726 10 O -0.431 6.431 11 C -0.038 4.038 12 H 0.116 0.884 13 N -0.335 5.335 14 C -0.134 4.134 15 C -0.004 4.004 16 C -0.562 4.562 17 H 0.069 0.931 18 C -0.142 4.142 19 N -0.531 5.531 20 Si 0.716 3.284 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.010 4.010 25 C -0.027 4.027 26 O -0.239 6.239 27 C 0.399 3.601 28 O -0.409 6.409 29 N -0.398 5.398 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.120 0.880 39 H 0.145 0.855 40 H 0.162 0.838 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.031 0.969 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.107 0.893 48 H 0.128 0.872 49 H 0.130 0.870 50 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -16.194 -16.851 -5.155 23.933 hybrid contribution 0.415 -0.599 0.127 0.740 sum -15.779 -17.451 -5.027 24.058 Atomic orbital electron populations 1.22276 0.91941 1.03453 1.04152 1.21681 0.96014 0.92580 0.85686 1.21923 1.01968 0.91654 0.97117 0.89402 1.21707 1.01602 0.96478 0.95731 1.21912 1.01848 0.94799 0.98834 1.21914 1.00760 0.96844 0.82766 1.48208 1.60564 1.11474 1.14226 1.22833 0.75467 0.91831 0.82515 1.90641 1.55622 1.67184 1.29627 1.21881 1.01338 0.86955 0.93602 0.88385 1.59013 1.12905 1.58199 1.03353 1.21699 0.91616 1.02986 0.97139 1.18997 0.95564 0.88061 0.97790 1.21221 1.06317 0.91989 1.36693 0.93081 1.24979 0.97269 0.95905 0.96058 1.69959 1.38856 0.97410 1.46888 0.86724 0.84446 0.76895 0.80291 1.20355 1.21312 1.20305 1.21601 0.98699 0.81952 0.98708 1.24623 0.96657 0.86490 0.94971 1.87328 1.68587 1.49003 1.18986 1.18482 0.78540 0.81485 0.81554 1.91093 1.50141 1.45115 1.54553 1.46155 1.54689 1.29010 1.09955 0.89950 0.91355 0.90669 0.91037 0.90875 0.90624 0.89796 0.91338 0.88004 0.85462 0.83799 0.92900 0.92713 0.96931 0.94693 0.93006 0.91118 0.89333 0.87210 0.87005 0.72132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.57 8.00 37.16 0.30 -0.28 16 2 C 0.13 0.74 0.78 -130.92 -0.10 0.64 16 3 C -0.11 -0.74 1.83 -90.50 -0.17 -0.91 16 4 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 5 C -0.12 -0.61 4.65 -26.68 -0.12 -0.74 16 6 C -0.14 -1.03 6.08 -26.61 -0.16 -1.19 16 7 C 0.10 0.91 5.76 -3.71 -0.02 0.89 16 8 N -0.61 -6.76 2.97 -172.77 -0.51 -7.28 16 9 C 0.49 7.17 6.94 -10.99 -0.08 7.09 16 10 O -0.55 -9.67 15.66 5.55 0.09 -9.58 16 11 C 0.08 1.24 2.29 -68.86 -0.16 1.08 16 12 H 0.10 1.45 6.80 -51.93 -0.35 1.10 16 13 N -0.81 -13.16 8.44 -5.65 -0.05 -13.21 16 14 C -0.10 -1.84 4.45 -26.73 -0.12 -1.96 16 15 C 0.03 0.81 4.86 -27.89 -0.14 0.67 16 16 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 17 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 20 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 C 0.11 0.99 5.26 -3.71 -0.02 0.97 16 25 C 0.05 0.27 6.99 37.72 0.26 0.53 16 26 O -0.33 -3.47 11.10 -37.83 -0.42 -3.89 16 27 C 0.65 7.85 9.16 53.71 0.49 8.34 16 28 O -0.52 -8.66 18.04 -19.12 -0.34 -9.00 16 29 N -0.73 -6.13 5.53 -52.01 -0.29 -6.42 16 30 H 0.08 0.16 6.72 -51.93 -0.35 -0.19 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.28 6.33 -51.93 -0.33 -0.05 16 33 H 0.07 0.28 6.30 -51.93 -0.33 -0.05 16 34 H 0.07 0.27 6.74 -51.93 -0.35 -0.08 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.10 1.12 4.84 -51.93 -0.25 0.86 16 39 H 0.33 4.69 9.06 -39.29 -0.36 4.34 16 40 H 0.35 5.83 8.58 -39.29 -0.34 5.50 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.97 6.97 -51.93 -0.36 0.61 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.07 0.48 6.14 -51.93 -0.32 0.16 16 47 H 0.09 0.95 6.61 -51.92 -0.34 0.61 16 48 H 0.11 0.32 7.73 -51.93 -0.40 -0.08 16 49 H 0.11 0.49 6.23 -51.93 -0.32 0.17 16 50 H 0.44 3.39 8.62 -40.82 -0.35 3.04 16 LS Contribution 385.97 15.07 5.82 5.82 Total: -1.00 -35.77 385.97 -8.09 -43.86 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -7.66 Total: 6.94 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -0.44 Total: 2.02 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.11 Total: -52.45 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.68 Total: -22.47 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.77 -8.09 -43.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576501673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.446 kcal (2) G-P(sol) polarization free energy of solvation -35.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds