Wall clock time and date at job start Sat Apr 11 2020 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 110.50288 * 2 1 4 4 H 1.08995 * 109.49894 * 174.23725 * 3 2 1 5 5 C 1.53046 * 109.49349 * 294.29668 * 3 2 1 6 6 C 1.53046 * 109.53579 * 181.31520 * 5 3 2 7 7 C 1.53187 * 109.31363 * 298.63645 * 6 5 3 8 8 N 1.46928 * 108.77625 * 54.63376 * 7 6 5 9 9 C 1.34775 * 120.62932 * 126.41524 * 8 7 6 10 10 O 1.21288 * 120.00275 * 179.97438 * 9 8 7 11 11 C 1.50700 * 120.00217 * 359.97291 * 9 8 7 12 12 H 1.09007 * 109.47035 * 40.00577 * 11 9 8 13 13 N 1.46902 * 109.47356 * 160.00219 * 11 9 8 14 14 C 1.52998 * 109.47571 * 280.00634 * 11 9 8 15 15 C 1.52995 * 109.47607 * 175.00059 * 14 11 9 16 16 C 1.50696 * 109.47332 * 180.02562 * 15 14 11 17 17 H 1.07998 * 120.00153 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99994 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99700 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99990 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47556 * 59.99375 * 20 18 16 22 22 H 1.48502 * 109.47191 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46970 * 299.99521 * 20 18 16 24 24 C 1.46921 * 118.73936 * 306.39044 * 8 7 6 25 25 C 1.54086 * 110.56546 * 237.25467 * 2 1 3 26 26 O 1.46042 * 103.84622 * 241.23760 * 25 2 1 27 27 C 1.33770 * 109.50897 * 0.12237 * 26 25 2 28 28 O 1.21513 * 123.07517 * 179.97438 * 27 26 25 29 29 N 1.34007 * 113.85961 * 359.91698 * 27 26 25 30 30 H 1.08994 * 109.47280 * 60.00681 * 1 2 3 31 31 H 1.09005 * 109.46804 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47345 * 300.00065 * 1 2 3 33 33 H 1.08993 * 109.45866 * 301.33695 * 5 3 2 34 34 H 1.09000 * 109.45949 * 61.30031 * 5 3 2 35 35 H 1.09001 * 109.49519 * 58.58791 * 6 5 3 36 36 H 1.08996 * 109.49601 * 178.68448 * 6 5 3 37 37 H 1.09000 * 109.59097 * 294.84726 * 7 6 5 38 38 H 1.09002 * 109.70548 * 174.49212 * 7 6 5 39 39 H 1.00899 * 110.99857 * 296.05387 * 13 11 9 40 40 H 1.00900 * 110.99881 * 60.00024 * 13 11 9 41 41 H 1.09004 * 109.46778 * 294.99877 * 14 11 9 42 42 H 1.08996 * 109.47096 * 54.99551 * 14 11 9 43 43 H 1.09004 * 109.46904 * 299.99742 * 15 14 11 44 44 H 1.08996 * 109.47307 * 59.99621 * 15 14 11 45 45 H 0.97001 * 119.99753 * 180.02562 * 19 18 16 46 46 H 1.08996 * 109.58905 * 293.82203 * 24 8 7 47 47 H 1.09008 * 109.58585 * 173.39403 * 24 8 7 48 48 H 1.08997 * 110.52454 * 359.90810 * 25 2 1 49 49 H 1.08998 * 110.52054 * 122.64865 * 25 2 1 50 50 H 0.96998 * 125.56420 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0659 1.4331 0.0000 4 1 3.1508 1.4158 0.1032 5 6 1.6888 2.1194 -1.3149 6 6 2.2525 3.5422 -1.3297 7 6 1.6412 4.3413 -0.1746 8 7 1.8744 3.6128 1.0799 9 6 2.4637 4.2215 2.1281 10 8 2.6503 3.6095 3.1585 11 6 2.8909 5.6627 2.0199 12 1 2.1332 6.2264 1.4756 13 7 3.0493 6.2289 3.3662 14 6 4.2231 5.7451 1.2720 15 6 4.5950 7.2128 1.0527 16 6 5.9068 7.2939 0.3154 17 1 6.4238 6.3890 0.0320 18 6 6.4476 8.5233 0.0036 19 7 5.8182 9.6252 0.3492 20 14 8.0740 8.6238 -0.9096 21 1 7.9467 7.9441 -2.2238 22 1 8.4349 10.0485 -1.1226 23 1 9.1331 7.9588 -0.1088 24 6 1.4525 2.2084 1.1702 25 6 2.0713 -0.7803 -1.2134 26 8 2.8329 -1.8732 -0.6147 27 6 2.7695 -1.7839 0.7185 28 8 3.3182 -2.5724 1.4628 29 7 2.0467 -0.7448 1.1585 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.1034 1.5558 -2.1506 34 1 0.6033 2.1579 -1.4061 35 1 3.3357 3.5055 -1.2137 36 1 2.0035 4.0223 -2.2760 37 1 0.5695 4.4562 -0.3365 38 1 2.1098 5.3239 -0.1190 39 1 2.1682 6.2451 3.8576 40 1 3.7469 5.7232 3.8913 41 1 5.0006 5.2572 1.8599 42 1 4.1298 5.2458 0.3076 43 1 3.8175 7.7007 0.4647 44 1 4.6883 7.7120 2.0171 45 1 6.1984 10.4901 0.1295 46 1 0.3654 2.1493 1.1179 47 1 1.7988 1.7827 2.1121 48 1 1.2498 -1.1692 -1.8150 49 1 2.7211 -0.1463 -1.8165 50 1 1.8895 -0.5206 2.0890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576501673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:10 Heat of formation + Delta-G solvation = -147.004450 kcal Electronic energy + Delta-G solvation = -31189.974450 eV Core-core repulsion = 27022.523167 eV Total energy + Delta-G solvation = -4167.451282 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.97944 -41.46370 -39.36860 -38.22661 -36.92756 -36.56051 -34.83610 -34.06078 -32.55552 -31.95025 -30.67480 -28.44003 -28.02290 -26.56346 -25.41617 -24.41982 -23.38556 -22.85061 -22.12024 -20.86089 -19.82612 -19.15537 -18.62697 -18.27851 -17.93440 -17.51510 -17.21485 -16.88493 -16.44332 -16.24971 -16.10432 -15.70403 -15.32105 -15.22534 -15.10709 -15.03264 -14.53847 -14.36087 -14.16902 -14.10187 -13.91892 -13.74875 -13.45328 -13.39157 -13.00907 -12.78309 -12.54670 -12.50988 -12.31435 -12.16682 -11.95147 -11.90516 -11.82264 -11.72722 -11.64553 -11.56130 -11.44520 -11.22133 -10.98953 -10.48907 -10.44979 -9.66220 -9.62730 -8.13856 -6.23953 1.41347 1.44036 1.45347 1.51915 1.53079 1.64320 1.95861 2.44298 2.50424 3.04759 3.19284 3.40755 3.43803 3.56735 3.64039 3.85689 3.96789 4.04780 4.07364 4.12299 4.15905 4.27820 4.28892 4.41742 4.47837 4.58611 4.65090 4.71866 4.73665 4.81115 4.84553 4.93789 4.95705 4.99830 5.14230 5.20010 5.24619 5.29260 5.47462 5.53299 5.56453 5.68575 5.83722 5.97957 6.06611 6.16610 6.29120 6.30642 6.48322 6.93214 6.94094 7.04843 7.44141 8.97010 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.002786 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.345907 B =10046.490543 C =10659.960048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.132 3.868 3 C -0.098 4.098 4 H 0.055 0.945 5 C -0.112 4.112 6 C -0.135 4.135 7 C 0.092 3.908 8 N -0.602 5.602 9 C 0.485 3.515 10 O -0.586 6.586 11 C 0.085 3.915 12 H 0.112 0.888 13 N -0.820 5.820 14 C -0.079 4.079 15 C 0.043 3.957 16 C -0.544 4.544 17 H 0.053 0.947 18 C 0.005 3.995 19 N -0.928 5.928 20 Si 0.956 3.044 21 H -0.264 1.264 22 H -0.284 1.284 23 H -0.275 1.275 24 C 0.110 3.890 25 C 0.041 3.959 26 O -0.346 6.346 27 C 0.643 3.357 28 O -0.582 6.582 29 N -0.717 5.717 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.046 0.954 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.346 0.654 40 H 0.343 0.657 41 H 0.033 0.967 42 H 0.068 0.932 43 H -0.002 1.002 44 H 0.003 0.997 45 H 0.262 0.738 46 H 0.103 0.897 47 H 0.064 0.936 48 H 0.147 0.853 49 H 0.126 0.874 50 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.040 -17.474 -8.189 27.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.045 3.955 3 C -0.119 4.119 4 H 0.074 0.926 5 C -0.149 4.149 6 C -0.173 4.173 7 C -0.030 4.030 8 N -0.334 5.334 9 C 0.272 3.728 10 O -0.467 6.467 11 C -0.031 4.031 12 H 0.129 0.871 13 N -0.349 5.349 14 C -0.118 4.118 15 C 0.006 3.994 16 C -0.582 4.582 17 H 0.071 0.929 18 C -0.193 4.193 19 N -0.568 5.568 20 Si 0.781 3.219 21 H -0.188 1.188 22 H -0.209 1.209 23 H -0.200 1.200 24 C -0.012 4.012 25 C -0.032 4.032 26 O -0.256 6.256 27 C 0.396 3.604 28 O -0.472 6.472 29 N -0.388 5.388 30 H 0.130 0.870 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.123 0.877 35 H 0.065 0.935 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.052 0.948 42 H 0.087 0.913 43 H 0.016 0.984 44 H 0.021 0.979 45 H 0.071 0.929 46 H 0.121 0.879 47 H 0.083 0.917 48 H 0.164 0.836 49 H 0.144 0.856 50 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -18.290 -17.528 -7.989 26.562 hybrid contribution 1.002 -0.317 0.938 1.409 sum -17.287 -17.845 -7.051 25.827 Atomic orbital electron populations 1.22319 0.89280 1.04245 1.05616 1.21891 0.97761 0.91227 0.84607 1.21819 0.99963 0.92454 0.97617 0.92600 1.21752 1.03586 0.94630 0.94934 1.21918 1.00077 0.96472 0.98869 1.22152 1.02784 0.95855 0.82182 1.48235 1.58805 1.12515 1.13799 1.22387 0.76118 0.91144 0.83115 1.90630 1.57385 1.67545 1.31140 1.21658 0.99700 0.88619 0.93083 0.87082 1.58996 1.13665 1.58495 1.03724 1.21389 0.93051 0.99220 0.98100 1.18785 0.94311 0.90950 0.95351 1.21669 1.07494 0.92227 1.36816 0.92877 1.25847 1.00956 0.95552 0.96935 1.70086 1.40656 0.97954 1.48095 0.85649 0.79792 0.77067 0.79410 1.18843 1.20902 1.20002 1.21822 1.00563 0.80341 0.98506 1.25117 0.97666 0.85606 0.94840 1.87286 1.69409 1.50835 1.18100 1.18644 0.78297 0.81550 0.81864 1.91033 1.52574 1.47386 1.56159 1.46222 1.53496 1.28093 1.10961 0.86977 0.91038 0.90597 0.88871 0.87651 0.93518 0.87835 0.87954 0.90235 0.84045 0.84365 0.94780 0.91335 0.98371 0.97899 0.92895 0.87894 0.91739 0.83560 0.85645 0.71990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.40 8.00 71.98 0.58 0.18 16 2 C 0.13 1.14 0.78 3.86 0.00 1.14 16 3 C -0.10 -1.12 1.83 -10.71 -0.02 -1.14 16 4 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 5 C -0.11 -0.66 4.65 30.63 0.14 -0.52 16 6 C -0.14 -1.65 6.08 30.67 0.19 -1.46 16 7 C 0.09 1.44 5.76 86.36 0.50 1.93 16 8 N -0.60 -12.40 2.97 -818.91 -2.43 -14.84 16 9 C 0.49 14.29 6.94 87.66 0.61 14.90 16 10 O -0.59 -20.89 15.66 -3.06 -0.05 -20.94 16 11 C 0.08 2.73 2.29 44.17 0.10 2.83 16 12 H 0.11 3.26 6.80 -2.38 -0.02 3.24 16 13 N -0.82 -27.59 8.44 -171.79 -1.45 -29.04 16 14 C -0.08 -3.12 4.45 30.59 0.14 -2.99 16 15 C 0.04 2.19 4.86 29.85 0.15 2.33 16 16 C -0.54 -30.31 9.11 25.60 0.23 -30.08 16 17 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 18 C 0.01 0.30 5.46 84.66 0.46 0.76 16 19 N -0.93 -55.55 13.29 21.45 0.28 -55.27 16 20 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 21 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 C 0.11 1.69 5.26 86.36 0.45 2.14 16 25 C 0.04 0.32 6.99 72.35 0.51 0.83 16 26 O -0.35 -6.95 11.10 -47.31 -0.53 -7.48 16 27 C 0.64 15.76 9.16 129.91 1.19 16.95 16 28 O -0.58 -20.20 18.04 19.64 0.35 -19.84 16 29 N -0.72 -11.62 5.53 -550.18 -3.04 -14.66 16 30 H 0.11 -0.31 6.72 -2.39 -0.02 -0.33 16 31 H 0.07 0.22 8.14 -2.38 -0.02 0.20 16 32 H 0.08 0.23 6.33 -2.39 -0.02 0.22 16 33 H 0.09 0.23 6.30 -2.39 -0.02 0.22 16 34 H 0.11 0.05 6.74 -2.39 -0.02 0.03 16 35 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 1.63 4.84 -2.39 -0.01 1.62 16 39 H 0.35 9.91 9.06 -89.69 -0.81 9.09 16 40 H 0.34 12.05 8.58 -89.69 -0.77 11.28 16 41 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 2.47 6.97 -2.39 -0.02 2.45 16 43 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 44 H 0.00 0.15 7.75 -2.39 -0.02 0.13 16 45 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 46 H 0.10 0.97 6.14 -2.39 -0.01 0.96 16 47 H 0.06 1.35 6.61 -2.38 -0.02 1.34 16 48 H 0.15 0.11 7.73 -2.39 -0.02 0.09 16 49 H 0.13 0.64 6.23 -2.39 -0.01 0.62 16 50 H 0.44 6.81 8.62 -92.71 -0.80 6.01 16 Total: -1.00 -82.78 385.97 -0.99 -83.77 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: -1.38 Total: 24.73 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 5.22 Total: 7.81 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -6.64 Total: -113.80 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -0.22 Total: -48.26 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -82.78 -0.99 -83.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576501673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.236 kcal (2) G-P(sol) polarization free energy of solvation -82.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds