Wall clock time and date at job start Sat Apr 11 2020 05:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 110.50288 * 2 1 4 4 H 1.08995 * 109.52532 * 174.22070 * 3 2 1 5 5 C 1.53046 * 109.49349 * 294.29668 * 3 2 1 6 6 C 1.53046 * 109.53579 * 181.31520 * 5 3 2 7 7 C 1.53187 * 109.31363 * 298.63645 * 6 5 3 8 8 N 1.46928 * 108.77625 * 54.63376 * 7 6 5 9 9 C 1.34780 * 120.63038 * 126.37031 * 8 7 6 10 10 O 1.21275 * 120.00065 * 180.02562 * 9 8 7 11 11 C 1.50704 * 119.99769 * 0.02562 * 9 8 7 12 12 H 1.08988 * 109.47569 * 320.00281 * 11 9 8 13 13 N 1.46903 * 109.47000 * 200.00171 * 11 9 8 14 14 C 1.53004 * 109.46724 * 80.00701 * 11 9 8 15 15 C 1.52997 * 109.46887 * 184.99731 * 14 11 9 16 16 C 1.50698 * 109.47070 * 179.97438 * 15 14 11 17 17 H 1.08002 * 120.00043 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00128 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99823 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00141 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47270 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47360 * 120.00116 * 20 18 16 23 23 H 1.48500 * 109.47343 * 239.99733 * 20 18 16 24 24 C 1.46921 * 118.73936 * 306.39044 * 8 7 6 25 25 C 1.54086 * 110.56546 * 237.25467 * 2 1 3 26 26 O 1.46042 * 103.84622 * 241.23760 * 25 2 1 27 27 C 1.33770 * 109.50897 * 0.12237 * 26 25 2 28 28 O 1.21513 * 123.07517 * 179.97438 * 27 26 25 29 29 N 1.34007 * 113.85961 * 359.91698 * 27 26 25 30 30 H 1.08994 * 109.47280 * 60.00681 * 1 2 3 31 31 H 1.09005 * 109.46804 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47345 * 300.00065 * 1 2 3 33 33 H 1.08993 * 109.45866 * 301.33695 * 5 3 2 34 34 H 1.09000 * 109.45949 * 61.30031 * 5 3 2 35 35 H 1.09001 * 109.49519 * 58.58791 * 6 5 3 36 36 H 1.08996 * 109.49601 * 178.68448 * 6 5 3 37 37 H 1.09000 * 109.59097 * 294.84726 * 7 6 5 38 38 H 1.09002 * 109.70548 * 174.49212 * 7 6 5 39 39 H 1.00897 * 111.00037 * 176.05365 * 13 11 9 40 40 H 1.00902 * 110.99759 * 300.00640 * 13 11 9 41 41 H 1.09001 * 109.46990 * 304.99716 * 14 11 9 42 42 H 1.08994 * 109.47355 * 64.99397 * 14 11 9 43 43 H 1.09001 * 109.47293 * 299.99799 * 15 14 11 44 44 H 1.09008 * 109.47399 * 59.99612 * 15 14 11 45 45 H 0.96998 * 119.99810 * 179.97438 * 19 18 16 46 46 H 1.08996 * 109.58905 * 293.82203 * 24 8 7 47 47 H 1.09001 * 109.70481 * 173.46556 * 24 8 7 48 48 H 1.08997 * 110.52454 * 359.90810 * 25 2 1 49 49 H 1.08998 * 110.52054 * 122.64865 * 25 2 1 50 50 H 0.96998 * 125.56420 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0659 1.4331 0.0000 4 1 3.1508 1.4163 0.1034 5 6 1.6888 2.1194 -1.3149 6 6 2.2525 3.5422 -1.3297 7 6 1.6412 4.3413 -0.1746 8 7 1.8744 3.6128 1.0799 9 6 2.4646 4.2213 2.1278 10 8 2.6519 3.6090 3.1578 11 6 2.8916 5.6625 2.0196 12 1 3.3171 5.8423 1.0325 13 7 3.8999 5.9529 3.0478 14 6 1.6776 6.5708 2.2250 15 6 2.0851 8.0270 1.9923 16 6 0.8892 8.9216 2.1939 17 1 -0.0658 8.4943 2.4617 18 6 1.0146 10.2858 2.0375 19 7 2.1777 10.8062 1.7119 20 14 -0.4675 11.3948 2.2881 21 1 -1.6485 10.5691 2.6469 22 1 -0.1860 12.3574 3.3833 23 1 -0.7462 12.1396 1.0340 24 6 1.4525 2.2084 1.1702 25 6 2.0713 -0.7803 -1.2134 26 8 2.8329 -1.8732 -0.6147 27 6 2.7695 -1.7839 0.7185 28 8 3.3182 -2.5724 1.4628 29 7 2.0467 -0.7448 1.1585 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.1034 1.5558 -2.1506 34 1 0.6033 2.1579 -1.4061 35 1 3.3357 3.5055 -1.2137 36 1 2.0035 4.0223 -2.2760 37 1 0.5695 4.4562 -0.3365 38 1 2.1098 5.3239 -0.1190 39 1 4.2494 6.8949 2.9555 40 1 3.5294 5.7937 3.9727 41 1 0.8942 6.2954 1.5188 42 1 1.3058 6.4558 3.2431 43 1 2.8684 8.3024 2.6984 44 1 2.4569 8.1421 0.9741 45 1 2.2658 11.7659 1.6016 46 1 0.3654 2.1493 1.1179 47 1 1.7967 1.7811 2.1120 48 1 1.2498 -1.1692 -1.8150 49 1 2.7211 -0.1463 -1.8165 50 1 1.8895 -0.5206 2.0890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576501675.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:23 Heat of formation + Delta-G solvation = -119.085987 kcal Electronic energy + Delta-G solvation = -30937.952061 eV Core-core repulsion = 26771.711414 eV Total energy + Delta-G solvation = -4166.240647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.27770 -40.34238 -38.41394 -37.27085 -35.83356 -35.59557 -33.26839 -32.90933 -31.86668 -30.09816 -29.91404 -27.82313 -26.82694 -25.48374 -24.46226 -23.40875 -22.49074 -22.18368 -20.66978 -19.89609 -18.97059 -18.36447 -17.63399 -17.19686 -16.77648 -16.41686 -16.02328 -15.50875 -15.35512 -14.89941 -14.81732 -14.63718 -14.51889 -14.45990 -14.08920 -13.97582 -13.69735 -13.53815 -13.34261 -13.14081 -12.93215 -12.72176 -12.57151 -12.19005 -11.96261 -11.77826 -11.58786 -11.33923 -11.19728 -11.08863 -11.05200 -11.00371 -10.93103 -10.79032 -10.71034 -10.06199 -9.96591 -9.76153 -9.32980 -9.24657 -8.71279 -8.50198 -8.24713 -6.14512 -4.17789 2.33311 2.43093 2.78728 2.88880 3.07518 3.21427 3.29972 3.33216 3.53499 3.93668 4.05838 4.29803 4.34374 4.48238 4.55682 4.65921 4.68912 4.77427 4.82955 4.88613 4.95993 5.06724 5.12013 5.16064 5.21881 5.26943 5.29312 5.44332 5.46178 5.46655 5.56514 5.61693 5.67952 5.70539 5.75967 5.96762 6.20012 6.39316 6.43261 6.46873 6.79262 6.91069 7.27805 7.44523 7.51295 7.56626 7.77863 7.82307 7.84594 8.24484 8.32244 8.88361 9.47534 10.96364 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021684 B = 0.002372 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.938958 B =11801.553181 C =12277.836886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.128 3.872 3 C -0.105 4.105 4 H 0.087 0.913 5 C -0.118 4.118 6 C -0.135 4.135 7 C 0.101 3.899 8 N -0.615 5.615 9 C 0.529 3.471 10 O -0.537 6.537 11 C 0.074 3.926 12 H 0.097 0.903 13 N -0.831 5.831 14 C -0.138 4.138 15 C 0.025 3.975 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.116 3.884 25 C 0.048 3.952 26 O -0.330 6.330 27 C 0.647 3.353 28 O -0.525 6.525 29 N -0.725 5.725 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.355 0.645 40 H 0.346 0.654 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.261 0.739 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.110 0.890 49 H 0.111 0.889 50 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.916 -19.456 -10.505 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 C -0.126 4.126 4 H 0.105 0.895 5 C -0.156 4.156 6 C -0.173 4.173 7 C -0.022 4.022 8 N -0.349 5.349 9 C 0.317 3.683 10 O -0.413 6.413 11 C -0.041 4.041 12 H 0.115 0.885 13 N -0.363 5.363 14 C -0.178 4.178 15 C -0.012 4.012 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.007 4.007 25 C -0.027 4.027 26 O -0.240 6.240 27 C 0.399 3.601 28 O -0.409 6.409 29 N -0.397 5.397 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.170 0.830 40 H 0.159 0.841 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.108 0.892 48 H 0.128 0.872 49 H 0.129 0.871 50 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -2.842 -20.833 -10.223 23.379 hybrid contribution -1.664 1.806 0.726 2.561 sum -4.506 -19.027 -9.496 21.737 Atomic orbital electron populations 1.22288 0.91864 1.03485 1.04301 1.21679 0.96097 0.92533 0.85644 1.21914 1.01827 0.91690 0.97129 0.89497 1.21706 1.01846 0.96297 0.95729 1.21921 1.01292 0.95131 0.98973 1.21894 1.01342 0.96295 0.82645 1.48019 1.61279 1.11489 1.14126 1.20946 0.75582 0.89255 0.82467 1.90627 1.54746 1.66642 1.29259 1.21518 0.94273 0.90194 0.98081 0.88499 1.58758 1.37731 1.33067 1.06779 1.22404 0.95628 0.98329 1.01401 1.19101 0.97034 0.87955 0.97144 1.21197 0.95874 0.91563 1.47512 0.92693 1.25014 0.95899 0.98300 0.95095 1.69958 1.23299 1.12066 1.47809 0.86537 0.82931 0.80690 0.77861 1.19772 1.20931 1.20919 1.21570 0.98855 0.81607 0.98655 1.24616 0.96622 0.86477 0.94991 1.87323 1.68601 1.49033 1.19031 1.18479 0.78573 0.81499 0.81529 1.91093 1.50200 1.45104 1.54541 1.46163 1.54602 1.28965 1.10014 0.89936 0.91350 0.90518 0.91133 0.90704 0.91153 0.89938 0.90934 0.88405 0.83008 0.84124 0.92454 0.92694 0.96407 0.96365 0.92895 0.91032 0.89182 0.87214 0.87105 0.72031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.61 8.00 37.16 0.30 -0.32 16 2 C 0.13 0.71 0.78 -130.92 -0.10 0.61 16 3 C -0.11 -0.69 1.83 -90.50 -0.17 -0.86 16 4 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 5 C -0.12 -0.56 4.65 -26.68 -0.12 -0.69 16 6 C -0.13 -0.90 6.08 -26.61 -0.16 -1.06 16 7 C 0.10 0.95 5.59 -3.71 -0.02 0.93 16 8 N -0.61 -7.11 2.97 -172.77 -0.51 -7.63 16 9 C 0.53 8.27 6.95 -10.98 -0.08 8.20 16 10 O -0.54 -10.02 15.67 5.56 0.09 -9.94 16 11 C 0.07 1.20 2.35 -68.86 -0.16 1.04 16 12 H 0.10 1.47 6.54 -51.94 -0.34 1.13 16 13 N -0.83 -13.96 8.94 -5.65 -0.05 -14.01 16 14 C -0.14 -2.56 4.54 -26.73 -0.12 -2.68 16 15 C 0.02 0.57 4.74 -27.89 -0.13 0.44 16 16 C -0.52 -13.83 9.11 -34.44 -0.31 -14.15 16 17 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 20 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.12 1.06 5.25 -3.71 -0.02 1.04 16 25 C 0.05 0.25 6.99 37.72 0.26 0.51 16 26 O -0.33 -3.31 11.10 -37.83 -0.42 -3.73 16 27 C 0.65 7.59 9.16 53.71 0.49 8.08 16 28 O -0.52 -8.45 18.04 -19.12 -0.34 -8.80 16 29 N -0.73 -5.97 5.53 -52.01 -0.29 -6.25 16 30 H 0.08 0.18 6.72 -51.93 -0.35 -0.17 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.32 6.33 -51.93 -0.33 -0.01 16 33 H 0.07 0.22 6.30 -51.93 -0.33 -0.11 16 34 H 0.07 0.28 6.74 -51.93 -0.35 -0.07 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 1.06 5.18 -51.93 -0.27 0.79 16 39 H 0.35 5.95 7.55 -39.29 -0.30 5.66 16 40 H 0.35 5.92 8.58 -39.29 -0.34 5.58 16 41 H 0.06 1.01 7.20 -51.93 -0.37 0.63 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.02 0.43 6.87 -51.93 -0.36 0.08 16 44 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 45 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.07 0.54 6.14 -51.93 -0.32 0.22 16 47 H 0.09 0.99 6.61 -51.93 -0.34 0.65 16 48 H 0.11 0.29 7.73 -51.93 -0.40 -0.11 16 49 H 0.11 0.41 6.23 -51.93 -0.32 0.08 16 50 H 0.44 3.36 8.61 -40.82 -0.35 3.01 16 LS Contribution 384.26 15.07 5.79 5.79 Total: -1.00 -34.66 384.26 -8.03 -42.69 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -7.57 Total: 8.20 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -0.44 Total: 2.58 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.12 Total: -52.47 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.68 Total: -22.46 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.66 -8.03 -42.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576501675.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.392 kcal (2) G-P(sol) polarization free energy of solvation -34.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds