Wall clock time and date at job start Sat Apr 11 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 110.50288 * 2 1 4 4 H 1.08995 * 109.52532 * 174.22070 * 3 2 1 5 5 C 1.53046 * 109.49349 * 294.29668 * 3 2 1 6 6 C 1.53046 * 109.53579 * 181.31520 * 5 3 2 7 7 C 1.53187 * 109.31363 * 298.63645 * 6 5 3 8 8 N 1.46928 * 108.77625 * 54.63376 * 7 6 5 9 9 C 1.34780 * 120.63038 * 126.37031 * 8 7 6 10 10 O 1.21275 * 120.00065 * 180.02562 * 9 8 7 11 11 C 1.50704 * 119.99769 * 0.02562 * 9 8 7 12 12 H 1.08988 * 109.47569 * 320.00281 * 11 9 8 13 13 N 1.46903 * 109.47000 * 200.00171 * 11 9 8 14 14 C 1.53004 * 109.46724 * 80.00701 * 11 9 8 15 15 C 1.52997 * 109.46887 * 184.99731 * 14 11 9 16 16 C 1.50698 * 109.47070 * 179.97438 * 15 14 11 17 17 H 1.08002 * 120.00043 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00128 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99823 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00141 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47270 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47360 * 120.00116 * 20 18 16 23 23 H 1.48500 * 109.47343 * 239.99733 * 20 18 16 24 24 C 1.46921 * 118.73936 * 306.39044 * 8 7 6 25 25 C 1.54086 * 110.56546 * 237.25467 * 2 1 3 26 26 O 1.46042 * 103.84622 * 241.23760 * 25 2 1 27 27 C 1.33770 * 109.50897 * 0.12237 * 26 25 2 28 28 O 1.21513 * 123.07517 * 179.97438 * 27 26 25 29 29 N 1.34007 * 113.85961 * 359.91698 * 27 26 25 30 30 H 1.08994 * 109.47280 * 60.00681 * 1 2 3 31 31 H 1.09005 * 109.46804 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47345 * 300.00065 * 1 2 3 33 33 H 1.08993 * 109.45866 * 301.33695 * 5 3 2 34 34 H 1.09000 * 109.45949 * 61.30031 * 5 3 2 35 35 H 1.09001 * 109.49519 * 58.58791 * 6 5 3 36 36 H 1.08996 * 109.49601 * 178.68448 * 6 5 3 37 37 H 1.09000 * 109.59097 * 294.84726 * 7 6 5 38 38 H 1.09002 * 109.70548 * 174.49212 * 7 6 5 39 39 H 1.00897 * 111.00037 * 176.05365 * 13 11 9 40 40 H 1.00902 * 110.99759 * 300.00640 * 13 11 9 41 41 H 1.09001 * 109.46990 * 304.99716 * 14 11 9 42 42 H 1.08994 * 109.47355 * 64.99397 * 14 11 9 43 43 H 1.09001 * 109.47293 * 299.99799 * 15 14 11 44 44 H 1.09008 * 109.47399 * 59.99612 * 15 14 11 45 45 H 0.96998 * 119.99810 * 179.97438 * 19 18 16 46 46 H 1.08996 * 109.58905 * 293.82203 * 24 8 7 47 47 H 1.09001 * 109.70481 * 173.46556 * 24 8 7 48 48 H 1.08997 * 110.52454 * 359.90810 * 25 2 1 49 49 H 1.08998 * 110.52054 * 122.64865 * 25 2 1 50 50 H 0.96998 * 125.56420 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0659 1.4331 0.0000 4 1 3.1508 1.4163 0.1034 5 6 1.6888 2.1194 -1.3149 6 6 2.2525 3.5422 -1.3297 7 6 1.6412 4.3413 -0.1746 8 7 1.8744 3.6128 1.0799 9 6 2.4646 4.2213 2.1278 10 8 2.6519 3.6090 3.1578 11 6 2.8916 5.6625 2.0196 12 1 3.3171 5.8423 1.0325 13 7 3.8999 5.9529 3.0478 14 6 1.6776 6.5708 2.2250 15 6 2.0851 8.0270 1.9923 16 6 0.8892 8.9216 2.1939 17 1 -0.0658 8.4943 2.4617 18 6 1.0146 10.2858 2.0375 19 7 2.1777 10.8062 1.7119 20 14 -0.4675 11.3948 2.2881 21 1 -1.6485 10.5691 2.6469 22 1 -0.1860 12.3574 3.3833 23 1 -0.7462 12.1396 1.0340 24 6 1.4525 2.2084 1.1702 25 6 2.0713 -0.7803 -1.2134 26 8 2.8329 -1.8732 -0.6147 27 6 2.7695 -1.7839 0.7185 28 8 3.3182 -2.5724 1.4628 29 7 2.0467 -0.7448 1.1585 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.1034 1.5558 -2.1506 34 1 0.6033 2.1579 -1.4061 35 1 3.3357 3.5055 -1.2137 36 1 2.0035 4.0223 -2.2760 37 1 0.5695 4.4562 -0.3365 38 1 2.1098 5.3239 -0.1190 39 1 4.2494 6.8949 2.9555 40 1 3.5294 5.7937 3.9727 41 1 0.8942 6.2954 1.5188 42 1 1.3058 6.4558 3.2431 43 1 2.8684 8.3024 2.6984 44 1 2.4569 8.1421 0.9741 45 1 2.2658 11.7659 1.6016 46 1 0.3654 2.1493 1.1179 47 1 1.7967 1.7811 2.1120 48 1 1.2498 -1.1692 -1.8150 49 1 2.7211 -0.1463 -1.8165 50 1 1.8895 -0.5206 2.0890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576501675.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:21 Heat of formation + Delta-G solvation = -146.428880 kcal Electronic energy + Delta-G solvation = -30939.137737 eV Core-core repulsion = 26771.711414 eV Total energy + Delta-G solvation = -4167.426324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.95311 -41.38194 -39.32376 -38.19421 -37.12558 -36.55722 -34.85440 -34.02960 -32.53853 -31.69871 -30.69282 -28.47018 -28.00771 -26.56884 -25.48853 -24.47997 -23.38194 -22.86373 -22.14540 -20.71707 -19.91674 -19.17010 -18.78573 -18.25355 -17.92948 -17.49786 -17.13690 -16.52601 -16.24822 -16.16811 -15.93931 -15.70287 -15.50084 -15.20728 -15.05283 -14.88814 -14.70004 -14.52029 -14.25264 -14.11463 -13.88692 -13.84267 -13.44767 -13.33720 -13.02960 -12.92543 -12.71176 -12.50921 -12.42950 -12.20992 -11.92365 -11.88875 -11.81860 -11.77442 -11.66890 -11.56174 -11.43704 -11.27624 -10.69764 -10.56181 -10.39958 -9.71277 -9.58668 -8.21184 -6.31283 1.38991 1.41330 1.52248 1.55236 1.57696 1.66266 1.92447 2.40243 2.52961 3.07134 3.12856 3.41997 3.48329 3.58510 3.71943 3.86171 4.00094 4.01006 4.11355 4.14036 4.17929 4.22983 4.30401 4.44019 4.49832 4.60205 4.63972 4.68064 4.74322 4.79786 4.86053 4.90741 4.97425 5.03046 5.07534 5.15029 5.23197 5.28528 5.47189 5.47681 5.56525 5.64992 5.70963 5.80833 6.03734 6.19430 6.21149 6.34797 6.43995 6.84358 6.95790 7.14864 7.38056 8.89744 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021684 B = 0.002372 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.938958 B =11801.553181 C =12277.836886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.131 3.869 3 C -0.095 4.095 4 H 0.063 0.937 5 C -0.114 4.114 6 C -0.130 4.130 7 C 0.091 3.909 8 N -0.605 5.605 9 C 0.524 3.476 10 O -0.576 6.576 11 C 0.080 3.920 12 H 0.108 0.892 13 N -0.833 5.833 14 C -0.118 4.118 15 C 0.032 3.968 16 C -0.541 4.541 17 H 0.055 0.945 18 C 0.006 3.994 19 N -0.927 5.927 20 Si 0.958 3.042 21 H -0.265 1.265 22 H -0.283 1.283 23 H -0.276 1.276 24 C 0.111 3.889 25 C 0.043 3.957 26 O -0.345 6.345 27 C 0.644 3.356 28 O -0.582 6.582 29 N -0.717 5.717 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.352 0.648 40 H 0.343 0.657 41 H 0.070 0.930 42 H 0.040 0.960 43 H -0.001 1.001 44 H 0.004 0.996 45 H 0.263 0.737 46 H 0.096 0.904 47 H 0.065 0.935 48 H 0.145 0.855 49 H 0.130 0.870 50 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.366 -19.779 -13.086 24.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.045 3.955 3 C -0.115 4.115 4 H 0.081 0.919 5 C -0.151 4.151 6 C -0.168 4.168 7 C -0.030 4.030 8 N -0.338 5.338 9 C 0.312 3.688 10 O -0.455 6.455 11 C -0.035 4.035 12 H 0.125 0.875 13 N -0.364 5.364 14 C -0.158 4.158 15 C -0.006 4.006 16 C -0.579 4.579 17 H 0.073 0.927 18 C -0.193 4.193 19 N -0.567 5.567 20 Si 0.783 3.217 21 H -0.189 1.189 22 H -0.209 1.209 23 H -0.202 1.202 24 C -0.011 4.011 25 C -0.031 4.031 26 O -0.255 6.255 27 C 0.397 3.603 28 O -0.471 6.471 29 N -0.388 5.388 30 H 0.129 0.871 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.167 0.833 40 H 0.156 0.844 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.017 0.983 44 H 0.023 0.977 45 H 0.072 0.928 46 H 0.114 0.886 47 H 0.084 0.916 48 H 0.162 0.838 49 H 0.148 0.852 50 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -5.335 -21.142 -12.875 25.323 hybrid contribution -0.910 1.954 1.465 2.607 sum -6.246 -19.188 -11.410 23.181 Atomic orbital electron populations 1.22325 0.89725 1.04141 1.05472 1.21882 0.97506 0.91401 0.84760 1.21801 1.00223 0.92186 0.97318 0.91854 1.21765 1.03433 0.94891 0.95041 1.21907 1.00342 0.96163 0.98436 1.22146 1.02553 0.95865 0.82482 1.48069 1.59381 1.12542 1.13767 1.20762 0.76123 0.88896 0.83018 1.90611 1.56701 1.67269 1.30911 1.21448 0.93062 0.90659 0.98309 0.87473 1.58775 1.37964 1.32813 1.06880 1.22118 0.96893 0.96003 1.00771 1.18954 0.95561 0.90426 0.95621 1.21620 0.96772 0.92405 1.47084 0.92670 1.25851 0.98629 0.99919 0.94884 1.70068 1.25286 1.12469 1.48873 0.85509 0.79679 0.78669 0.77856 1.18893 1.20880 1.20163 1.21795 1.00345 0.80140 0.98860 1.25105 0.97688 0.85590 0.94681 1.87284 1.69368 1.50835 1.18031 1.18623 0.78289 0.81493 0.81881 1.91035 1.52613 1.47331 1.56168 1.46237 1.53469 1.28139 1.10959 0.87110 0.91061 0.90918 0.88390 0.88304 0.92534 0.87764 0.89139 0.90220 0.83291 0.84446 0.91169 0.94094 0.98304 0.97744 0.92765 0.88607 0.91600 0.83756 0.85235 0.72017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.57 8.00 71.98 0.58 0.01 16 2 C 0.13 1.10 0.78 3.86 0.00 1.10 16 3 C -0.09 -1.01 1.83 -10.71 -0.02 -1.03 16 4 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 5 C -0.11 -0.56 4.65 30.63 0.14 -0.42 16 6 C -0.13 -1.30 6.08 30.67 0.19 -1.11 16 7 C 0.09 1.50 5.59 86.36 0.48 1.98 16 8 N -0.60 -13.27 2.97 -818.92 -2.43 -15.71 16 9 C 0.52 16.45 6.95 87.66 0.61 17.06 16 10 O -0.58 -22.04 15.67 -3.01 -0.05 -22.09 16 11 C 0.08 2.62 2.35 44.17 0.10 2.72 16 12 H 0.11 3.27 6.54 -2.39 -0.02 3.25 16 13 N -0.83 -28.87 8.94 -171.80 -1.54 -30.41 16 14 C -0.12 -4.40 4.54 30.59 0.14 -4.26 16 15 C 0.03 1.49 4.74 29.85 0.14 1.63 16 16 C -0.54 -28.65 9.11 25.60 0.23 -28.42 16 17 H 0.06 2.85 7.74 -2.91 -0.02 2.83 16 18 C 0.01 0.30 5.46 84.65 0.46 0.77 16 19 N -0.93 -53.06 13.29 21.45 0.28 -52.77 16 20 Si 0.96 42.09 29.54 68.60 2.03 44.11 16 21 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 23 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 24 C 0.11 1.83 5.25 86.36 0.45 2.28 16 25 C 0.04 0.29 6.99 72.35 0.51 0.79 16 26 O -0.35 -6.49 11.10 -47.31 -0.53 -7.01 16 27 C 0.64 15.20 9.16 129.91 1.19 16.39 16 28 O -0.58 -19.68 18.04 19.64 0.35 -19.33 16 29 N -0.72 -11.39 5.53 -550.18 -3.04 -14.43 16 30 H 0.11 -0.17 6.72 -2.39 -0.02 -0.19 16 31 H 0.07 0.28 8.14 -2.38 -0.02 0.26 16 32 H 0.07 0.36 6.33 -2.39 -0.02 0.35 16 33 H 0.10 0.04 6.30 -2.39 -0.02 0.03 16 34 H 0.10 0.11 6.74 -2.39 -0.02 0.09 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.62 5.18 -2.39 -0.01 1.61 16 39 H 0.35 12.31 7.55 -89.70 -0.68 11.64 16 40 H 0.34 12.21 8.58 -89.69 -0.77 11.44 16 41 H 0.07 2.41 7.20 -2.39 -0.02 2.39 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.00 -0.07 6.87 -2.39 -0.02 -0.08 16 44 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 45 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 46 H 0.10 1.15 6.14 -2.39 -0.01 1.14 16 47 H 0.07 1.45 6.61 -2.39 -0.02 1.43 16 48 H 0.14 0.02 7.73 -2.39 -0.02 0.00 16 49 H 0.13 0.39 6.23 -2.39 -0.01 0.37 16 50 H 0.44 6.86 8.61 -92.71 -0.80 6.06 16 Total: -1.00 -78.88 384.26 -0.95 -79.83 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: -1.24 Total: 28.30 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 5.21 Total: 9.50 kcal Atomic # 7 Polarization: -106.60 SS G_CDS: -6.72 Total: -113.32 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: -0.22 Total: -48.43 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -78.88 -0.95 -79.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576501675.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.596 kcal (2) G-P(sol) polarization free energy of solvation -78.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds