Wall clock time and date at job start Sat Apr 11 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47556 * 2 1 4 4 C 1.53007 * 109.47124 * 239.99541 * 2 1 3 5 5 C 1.53005 * 109.47029 * 119.99800 * 2 1 3 6 6 N 1.46904 * 109.47171 * 84.24693 * 5 2 1 7 7 C 1.46903 * 110.99809 * 78.05214 * 6 5 2 8 8 C 1.50695 * 109.47317 * 67.18196 * 7 6 5 9 9 H 1.08001 * 120.00002 * 355.08490 * 8 7 6 10 10 C 1.37881 * 120.00292 * 175.08176 * 8 7 6 11 11 N 1.31512 * 120.00108 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99841 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47194 * 89.99526 * 12 10 8 14 14 H 1.48497 * 109.47149 * 209.99774 * 12 10 8 15 15 H 1.48506 * 109.47237 * 329.99973 * 12 10 8 16 16 C 1.46903 * 110.99651 * 314.09996 * 6 5 2 17 17 C 1.50696 * 109.46948 * 283.70502 * 16 6 5 18 18 N 1.29947 * 126.28673 * 89.98233 * 17 16 6 19 19 O 1.21300 * 110.25145 * 180.02562 * 18 17 16 20 20 C 1.33645 * 109.81185 * 359.97438 * 19 18 17 21 21 C 1.50694 * 126.54781 * 179.97438 * 20 19 18 22 22 C 1.52999 * 109.47125 * 270.01709 * 21 20 19 23 23 C 1.53003 * 109.47478 * 180.02562 * 22 21 20 24 24 C 1.50693 * 109.47316 * 180.02562 * 23 22 21 25 25 O 1.20824 * 120.00119 * 359.97438 * 24 23 22 26 26 O 1.34230 * 120.00220 * 180.02562 * 24 23 22 27 27 N 1.31134 * 106.89498 * 0.22344 * 20 19 18 28 28 H 1.09006 * 109.46503 * 300.64389 * 1 2 3 29 29 H 1.08996 * 109.47088 * 60.63666 * 1 2 3 30 30 H 1.08993 * 109.47446 * 180.64303 * 1 2 3 31 31 H 1.08997 * 109.47363 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47014 * 300.00115 * 3 2 1 33 33 H 1.08999 * 109.47585 * 59.99550 * 3 2 1 34 34 H 1.08997 * 109.47010 * 292.77537 * 4 2 1 35 35 H 1.09000 * 109.46755 * 52.76928 * 4 2 1 36 36 H 1.08993 * 109.46797 * 172.77286 * 4 2 1 37 37 H 1.09000 * 109.47235 * 324.24652 * 5 2 1 38 38 H 1.09000 * 109.47340 * 204.24557 * 5 2 1 39 39 H 1.09000 * 109.46737 * 187.18222 * 7 6 5 40 40 H 1.08999 * 109.47158 * 307.17963 * 7 6 5 41 41 H 0.96998 * 120.00076 * 180.02562 * 11 10 8 42 42 H 1.09009 * 109.46648 * 163.70758 * 16 6 5 43 43 H 1.08995 * 109.47271 * 43.71297 * 16 6 5 44 44 H 1.09002 * 109.47293 * 150.02322 * 21 20 19 45 45 H 1.08999 * 109.47732 * 30.02170 * 21 20 19 46 46 H 1.09005 * 109.47039 * 60.00243 * 22 21 20 47 47 H 1.09001 * 109.47693 * 300.00693 * 22 21 20 48 48 H 1.08995 * 109.46931 * 59.99882 * 23 22 21 49 49 H 1.09004 * 109.46553 * 300.00422 * 23 22 21 50 50 H 0.96696 * 117.00113 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 2.0723 -2.1686 1.0002 7 6 3.2444 -2.5383 0.1955 8 6 4.4982 -2.3092 0.9994 9 1 4.4374 -1.8535 1.9766 10 6 5.7231 -2.6816 0.4874 11 7 6.8173 -2.4821 1.1892 12 14 5.8284 -3.4693 -1.2031 13 1 5.9982 -2.4122 -2.2321 14 1 6.9897 -4.3938 -1.2469 15 1 4.5810 -4.2281 -1.4742 16 6 0.8300 -2.6204 0.3594 17 6 -0.2703 -2.6855 1.3871 18 7 -1.0855 -1.7240 1.7029 19 8 -1.8553 -2.0924 2.5649 20 6 -1.5967 -3.3626 2.8904 21 6 -2.3237 -4.1915 3.9177 22 6 -1.6473 -4.0239 5.2798 23 6 -2.3850 -4.8661 6.3227 24 6 -1.7191 -4.7005 7.6643 25 8 -0.7533 -3.9830 7.7750 26 8 -2.1983 -5.3510 8.7363 27 7 -0.5861 -3.7478 2.1490 28 1 -0.3632 0.5238 0.8842 29 1 -0.3633 0.5039 -0.8956 30 1 -0.3634 -1.0275 0.0115 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9564 0.8899 34 1 1.7861 -1.7795 -1.1869 35 1 1.5749 -0.2877 -2.1345 36 1 3.1223 -0.6108 -1.3162 37 1 1.3748 -0.5115 2.0869 38 1 3.0445 -0.3709 1.4865 39 1 3.1776 -3.5903 -0.0817 40 1 3.2739 -1.9262 -0.7060 41 1 7.6791 -2.7437 0.8289 42 1 0.9828 -3.6095 -0.0724 43 1 0.5514 -1.9195 -0.4274 44 1 -2.2947 -5.2409 3.6244 45 1 -3.3603 -3.8613 3.9837 46 1 -1.6763 -2.9745 5.5731 47 1 -0.6106 -4.3542 5.2138 48 1 -2.3557 -5.9153 6.0291 49 1 -3.4218 -4.5361 6.3887 50 1 -1.7381 -5.2130 9.5754 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603338220.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:33 Heat of formation + Delta-G solvation = 35.139190 kcal Electronic energy + Delta-G solvation = -30689.520576 eV Core-core repulsion = 26529.967635 eV Total energy + Delta-G solvation = -4159.552942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -45.36955 -40.54688 -39.81486 -36.70060 -35.98131 -35.30526 -33.93115 -32.69907 -32.05898 -29.34959 -28.50868 -28.05844 -26.66636 -26.39088 -24.35377 -24.14581 -22.79551 -21.25671 -20.99440 -20.18462 -18.67246 -18.38036 -17.87820 -17.33660 -16.85140 -16.78307 -16.62369 -15.71069 -15.16503 -14.87916 -14.82278 -14.54551 -14.15733 -13.75240 -13.51316 -13.32268 -13.15514 -12.89048 -12.82133 -12.46644 -12.33341 -12.07844 -11.86564 -11.81567 -11.63324 -11.59344 -11.32772 -11.21608 -11.17844 -11.14439 -10.96882 -10.90592 -10.82697 -10.71074 -10.54040 -10.28207 -9.92140 -9.85427 -9.72089 -9.62564 -9.21097 -8.53379 -7.21243 -6.01607 -3.96960 1.31624 1.90163 2.44048 2.66141 2.97504 3.28284 3.37086 3.37751 3.80352 4.23880 4.37152 4.43655 4.54175 4.59116 4.89239 4.92128 4.96687 5.06515 5.17043 5.20455 5.23524 5.30948 5.32446 5.35111 5.60423 5.65587 5.80178 5.86212 5.88985 5.92799 5.94658 6.00235 6.10276 6.12106 6.18882 6.19440 6.29397 6.37464 6.45117 6.53449 6.64205 6.76811 6.81833 6.94320 7.00807 7.56678 7.60955 7.88607 7.99560 8.42867 8.67903 9.06814 9.59399 11.11837 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010561 B = 0.003000 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.571976 B = 9331.587739 C =10821.523483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.101 4.101 3 C -0.133 4.133 4 C -0.166 4.166 5 C 0.069 3.931 6 N -0.512 5.512 7 C 0.124 3.876 8 C -0.502 4.502 9 H 0.078 0.922 10 C 0.068 3.932 11 N -0.901 5.901 12 Si 0.870 3.130 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.265 1.265 16 C 0.095 3.905 17 C 0.199 3.801 18 N -0.377 5.377 19 O 0.066 5.934 20 C 0.163 3.837 21 C -0.020 4.020 22 C -0.112 4.112 23 C -0.110 4.110 24 C 0.475 3.525 25 O -0.508 6.508 26 O -0.521 6.521 27 N -0.462 5.462 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.027 0.973 40 H 0.032 0.968 41 H 0.263 0.737 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.102 0.898 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.112 0.888 49 H 0.110 0.890 50 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.276 -2.858 5.730 24.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 C -0.191 4.191 4 C -0.222 4.222 5 C -0.059 4.059 6 N -0.236 5.236 7 C -0.001 4.001 8 C -0.540 4.540 9 H 0.096 0.904 10 C -0.133 4.133 11 N -0.541 5.541 12 Si 0.698 3.302 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.190 1.190 16 C -0.034 4.034 17 C -0.075 4.075 18 N -0.087 5.087 19 O 0.010 5.990 20 C -0.059 4.059 21 C -0.059 4.059 22 C -0.151 4.151 23 C -0.147 4.147 24 C 0.317 3.683 25 O -0.395 6.395 26 O -0.333 6.333 27 N -0.195 5.195 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.045 0.955 40 H 0.049 0.951 41 H 0.073 0.927 42 H 0.110 0.890 43 H 0.120 0.880 44 H 0.129 0.871 45 H 0.120 0.880 46 H 0.100 0.900 47 H 0.106 0.894 48 H 0.130 0.870 49 H 0.129 0.871 50 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -22.612 -2.495 5.302 23.359 hybrid contribution 0.477 -0.012 -0.777 0.912 sum -22.135 -2.507 4.525 22.732 Atomic orbital electron populations 1.22605 0.94618 1.02986 1.00918 1.21207 0.95576 0.96406 0.97122 1.21788 1.01421 0.95144 1.00756 1.22796 1.02164 1.00859 0.96421 1.22273 1.02373 0.86712 0.94589 1.62024 1.00232 1.13608 1.47706 1.21170 0.88202 0.96350 0.94330 1.20991 0.88461 1.39996 1.04582 0.90396 1.24854 0.95661 0.95618 0.97137 1.69890 0.98107 1.48427 1.37665 0.86937 0.78041 0.79940 0.85308 1.20305 1.21225 1.19019 1.21468 0.87685 1.03248 0.91009 1.25964 0.98110 0.84355 0.99045 1.74870 1.05791 1.22303 1.05699 1.85279 1.45434 1.27405 1.40915 1.28552 0.94318 0.84554 0.98431 1.20077 0.98217 0.98500 0.89119 1.21460 1.00964 1.01643 0.91031 1.21300 1.01210 1.04103 0.88120 1.23474 0.81991 0.76171 0.86665 1.90803 1.26424 1.36578 1.85714 1.84512 1.60255 1.67673 1.20903 1.71904 1.11185 1.28590 1.07829 0.92452 0.93956 0.90391 0.92134 0.93450 0.93069 0.90829 0.93838 0.90517 0.92717 0.88863 0.95532 0.95082 0.92741 0.89048 0.87964 0.87117 0.88006 0.89979 0.89412 0.87009 0.87144 0.72985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 6.61 37.16 0.25 -2.10 16 2 C -0.10 -1.68 0.77 -154.51 -0.12 -1.80 16 3 C -0.13 -2.03 8.35 37.15 0.31 -1.72 16 4 C -0.17 -2.80 6.21 37.16 0.23 -2.57 16 5 C 0.07 1.37 4.77 -3.82 -0.02 1.35 16 6 N -0.51 -10.88 4.61 -237.51 -1.09 -11.97 16 7 C 0.12 2.93 3.12 -4.98 -0.02 2.92 16 8 C -0.50 -14.17 8.93 -34.44 -0.31 -14.48 16 9 H 0.08 2.44 7.42 -52.49 -0.39 2.05 16 10 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 11 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 12 Si 0.87 21.28 27.57 -169.99 -4.69 16.59 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.27 -6.20 6.40 56.52 0.36 -5.84 16 16 C 0.09 1.71 4.07 -4.98 -0.02 1.69 16 17 C 0.20 3.43 6.89 -156.37 -1.08 2.35 16 18 N -0.38 -6.05 8.98 30.90 0.28 -5.77 16 19 O 0.07 0.92 11.31 18.10 0.20 1.12 16 20 C 0.16 2.03 7.77 -13.06 -0.10 1.93 16 21 C -0.02 -0.14 5.84 -27.89 -0.16 -0.30 16 22 C -0.11 -0.88 4.49 -26.73 -0.12 -1.00 16 23 C -0.11 -0.55 5.81 -27.89 -0.16 -0.72 16 24 C 0.48 3.90 8.33 36.00 0.30 4.20 16 25 O -0.51 -6.50 16.74 -18.75 -0.31 -6.81 16 26 O -0.52 -3.10 13.42 -39.26 -0.53 -3.63 16 27 N -0.46 -7.54 11.55 -9.87 -0.11 -7.65 16 28 H 0.06 0.89 7.82 -51.93 -0.41 0.48 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.22 2.54 -51.93 -0.13 1.09 16 31 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.27 3.30 -51.93 -0.17 1.10 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 1.44 6.66 -51.93 -0.35 1.09 16 37 H 0.05 1.09 7.79 -51.93 -0.40 0.69 16 38 H 0.09 2.08 6.34 -51.93 -0.33 1.75 16 39 H 0.03 0.65 6.51 -51.93 -0.34 0.31 16 40 H 0.03 0.71 2.85 -52.06 -0.15 0.56 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.09 1.62 7.71 -51.92 -0.40 1.22 16 43 H 0.10 1.69 2.41 -51.93 -0.13 1.57 16 44 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 47 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 48 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.41 1.03 9.10 45.56 0.41 1.45 16 LS Contribution 384.37 15.07 5.79 5.79 Total: -1.00 -36.15 384.37 -7.40 -43.55 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.59 Total: 4.16 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -1.11 Total: -8.38 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.16 Total: -52.39 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.64 Total: -9.32 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.69 Total: 16.59 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.15 -7.40 -43.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603338220.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.684 kcal (2) G-P(sol) polarization free energy of solvation -36.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds