Wall clock time and date at job start Sat Apr 11 2020 05:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46813 * 2 1 4 4 C 1.50698 * 109.46980 * 240.00234 * 2 1 3 5 5 C 1.41266 * 126.70609 * 84.71103 * 4 2 1 6 6 C 1.36830 * 103.84321 * 179.85651 * 5 4 2 7 7 C 1.47514 * 126.94106 * 180.12647 * 6 5 4 8 8 O 1.21591 * 119.99884 * 352.67895 * 7 6 5 9 9 N 1.34777 * 120.00263 * 172.67590 * 7 6 5 10 10 C 1.46499 * 119.99620 * 3.70255 * 9 7 6 11 11 C 1.46495 * 119.99954 * 183.69765 * 9 7 6 12 12 C 1.52998 * 109.47106 * 90.00751 * 11 9 7 13 13 O 1.42898 * 109.47433 * 64.99324 * 12 11 9 14 14 C 1.42901 * 114.00203 * 180.02562 * 13 12 11 15 15 C 1.52992 * 109.47243 * 180.02562 * 14 13 12 16 16 N 1.46506 * 109.47121 * 65.00099 * 15 14 13 17 17 C 1.46500 * 119.99663 * 269.99804 * 16 15 14 18 18 C 1.36931 * 120.00050 * 90.00112 * 16 15 14 19 19 H 1.07997 * 120.00398 * 24.58981 * 18 16 15 20 20 C 1.38820 * 119.99900 * 204.59286 * 18 16 15 21 21 N 1.31618 * 119.99839 * 7.14713 * 20 18 16 22 22 Si 1.86800 * 119.99879 * 187.14451 * 20 18 16 23 23 H 1.48501 * 109.47146 * 60.00344 * 22 20 18 24 24 H 1.48505 * 109.46755 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47285 * 300.00226 * 22 20 18 26 26 O 1.34632 * 106.11383 * 0.39733 * 6 5 4 27 27 N 1.20888 * 111.47000 * 359.72893 * 26 6 5 28 28 H 1.08999 * 109.47161 * 299.99682 * 1 2 3 29 29 H 1.08997 * 109.46950 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47265 * 59.99965 * 1 2 3 31 31 H 1.08994 * 109.47265 * 120.00035 * 2 1 3 32 32 H 1.08998 * 109.47520 * 60.00238 * 3 2 1 33 33 H 1.09007 * 109.46678 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47351 * 299.99461 * 3 2 1 35 35 H 1.07997 * 128.07485 * 359.97438 * 5 4 2 36 36 H 1.09000 * 109.47142 * 83.94851 * 10 9 7 37 37 H 1.09000 * 109.47199 * 203.95063 * 10 9 7 38 38 H 1.09003 * 109.47117 * 323.94688 * 10 9 7 39 39 H 1.09003 * 109.46613 * 209.99854 * 11 9 7 40 40 H 1.08996 * 109.47740 * 330.00209 * 11 9 7 41 41 H 1.09004 * 109.47345 * 185.00081 * 12 11 9 42 42 H 1.09008 * 109.46806 * 304.99477 * 12 11 9 43 43 H 1.09004 * 109.46957 * 300.00432 * 14 13 12 44 44 H 1.08998 * 109.47340 * 59.99689 * 14 13 12 45 45 H 1.09007 * 109.46833 * 184.99802 * 15 14 13 46 46 H 1.08998 * 109.47413 * 304.99602 * 15 14 13 47 47 H 1.08996 * 109.46799 * 95.06593 * 17 16 15 48 48 H 1.09002 * 109.46590 * 215.06650 * 17 16 15 49 49 H 1.09003 * 109.47204 * 335.06801 * 17 16 15 50 50 H 0.96995 * 119.99980 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.2153 -0.1491 -2.5139 6 6 2.6849 -1.1929 -3.2637 7 6 3.0492 -1.1644 -4.6929 8 8 2.8189 -0.1739 -5.3594 9 7 3.6372 -2.2364 -5.2600 10 6 3.8411 -3.4588 -4.4786 11 6 4.0725 -2.1793 -6.6576 12 6 5.5153 -1.6744 -6.7222 13 8 6.3805 -2.6231 -6.0952 14 6 7.7587 -2.2454 -6.1007 15 6 8.5873 -3.3290 -5.4080 16 7 8.5218 -4.5673 -6.1881 17 6 7.4665 -5.5473 -5.9195 18 6 9.4470 -4.8087 -7.1683 19 1 10.4172 -4.3366 -7.1233 20 6 9.1377 -5.6604 -8.2200 21 7 7.9133 -6.1246 -8.3527 22 14 10.4594 -6.1476 -9.4469 23 1 11.5631 -6.8416 -8.7359 24 1 9.8774 -7.0573 -10.4663 25 1 10.9883 -4.9309 -10.1141 26 8 2.7415 -2.2525 -2.4352 27 7 2.3769 -1.9620 -1.3198 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 2.0299 0.8671 -2.8290 36 1 2.9310 -4.0583 -4.4978 37 1 4.6628 -4.0318 -4.9082 38 1 4.0812 -3.1957 -3.4484 39 1 4.0162 -3.1754 -7.0966 40 1 3.4248 -1.5005 -7.2125 41 1 5.8095 -1.5472 -7.7641 42 1 5.5890 -0.7179 -6.2046 43 1 8.0997 -2.1298 -7.1296 44 1 7.8787 -1.3009 -5.5700 45 1 9.6242 -3.0012 -5.3330 46 1 8.1896 -3.5075 -4.4089 47 1 6.6336 -5.3807 -6.6026 48 1 7.8597 -6.5535 -6.0644 49 1 7.1210 -5.4367 -4.8916 50 1 7.6971 -6.7193 -9.0878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656871128.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:01 Heat of formation + Delta-G solvation = 7.823742 kcal Electronic energy + Delta-G solvation = -30293.197848 eV Core-core repulsion = 26132.460420 eV Total energy + Delta-G solvation = -4160.737428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.23010 -39.94672 -37.54491 -36.96840 -35.79033 -34.98253 -32.75885 -32.29054 -31.44168 -29.90203 -27.99603 -27.63873 -26.66125 -25.71345 -24.49994 -24.28824 -22.95056 -22.39169 -21.41639 -20.29392 -19.47608 -18.02611 -17.74642 -16.87281 -16.55448 -16.52665 -15.87355 -15.50309 -15.21035 -14.96232 -14.69238 -14.58916 -14.12512 -13.90754 -13.74774 -13.59617 -13.33520 -13.02267 -13.00241 -12.62849 -12.37599 -12.26236 -12.11089 -11.96175 -11.87618 -11.74304 -11.45745 -11.34920 -11.22657 -10.94218 -10.80712 -10.75595 -10.50460 -10.39505 -10.35895 -10.05573 -9.92076 -9.91348 -9.79413 -8.94490 -8.75160 -8.48151 -6.64081 -5.65131 -3.12947 0.62796 1.80917 2.41272 2.79752 3.02794 3.40375 3.45741 3.46303 3.65476 4.07457 4.25174 4.50167 4.54410 4.62326 4.68358 4.76883 4.92989 5.10302 5.18756 5.24460 5.27850 5.36990 5.39069 5.42238 5.46130 5.52269 5.58823 5.62614 5.64307 5.69035 5.76908 5.78604 5.80676 5.90694 6.04626 6.13702 6.21925 6.28145 6.38872 6.58276 6.80340 6.95209 7.12373 7.52750 7.71057 7.83015 7.86564 7.94146 7.97636 8.48056 9.32302 9.94933 10.46103 11.38611 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023003 B = 0.002243 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.947379 B =12479.470811 C =12706.909208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.017 4.017 3 C -0.147 4.147 4 C 0.018 3.982 5 C -0.153 4.153 6 C -0.074 4.074 7 C 0.598 3.402 8 O -0.522 6.522 9 N -0.585 5.585 10 C 0.071 3.929 11 C 0.120 3.880 12 C 0.047 3.953 13 O -0.366 6.366 14 C 0.045 3.955 15 C 0.153 3.847 16 N -0.597 5.597 17 C 0.175 3.825 18 C -0.255 4.255 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.905 5.905 22 Si 0.903 3.097 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 O 0.122 5.878 27 N -0.349 5.349 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.180 0.820 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.041 0.959 43 H 0.048 0.952 44 H 0.022 0.978 45 H 0.057 0.943 46 H 0.043 0.957 47 H 0.033 0.967 48 H 0.036 0.964 49 H -0.008 1.008 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.726 12.854 13.997 24.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.036 4.036 3 C -0.204 4.204 4 C -0.140 4.140 5 C -0.175 4.175 6 C -0.139 4.139 7 C 0.383 3.617 8 O -0.399 6.399 9 N -0.316 5.316 10 C -0.071 4.071 11 C -0.002 4.002 12 C -0.031 4.031 13 O -0.285 6.285 14 C -0.035 4.035 15 C 0.025 3.975 16 N -0.319 5.319 17 C 0.031 3.969 18 C -0.385 4.385 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.550 5.550 22 Si 0.733 3.267 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.211 1.211 26 O 0.050 5.950 27 N -0.050 5.050 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.198 0.802 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.040 0.960 45 H 0.075 0.925 46 H 0.061 0.939 47 H 0.052 0.948 48 H 0.054 0.946 49 H 0.011 0.989 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.935 12.006 14.449 23.999 hybrid contribution 0.763 0.668 -1.347 1.686 sum -14.172 12.674 13.102 23.090 Atomic orbital electron populations 1.21835 0.93240 1.02516 1.02612 1.19552 0.96233 0.95511 0.92351 1.21864 1.01660 0.94169 1.02744 1.23587 1.02670 0.90460 0.97288 1.22759 1.01839 1.01361 0.91541 1.24226 1.06897 0.88426 0.94385 1.16691 0.78455 0.83703 0.82810 1.90847 1.55545 1.32575 1.60965 1.47704 1.57051 1.13518 1.13329 1.22159 1.02998 0.85794 0.96191 1.21716 0.93873 1.04181 0.80454 1.22765 0.90339 0.92385 0.97635 1.87931 1.17207 1.44624 1.78775 1.23458 0.81807 0.97530 1.00677 1.20885 0.96084 0.86729 0.93763 1.43843 1.32915 1.15421 1.39752 1.20709 0.91319 0.91933 0.92944 1.19147 0.93163 1.25980 1.00227 0.91761 1.25084 0.95968 1.01158 0.97293 1.70053 1.17123 1.35971 1.31829 0.86376 0.81151 0.78074 0.81119 1.21141 1.21679 1.21102 1.85193 1.61808 1.34134 1.13888 1.73718 1.14067 1.17011 1.00186 0.91411 0.92300 0.92066 0.89169 0.91392 0.92080 0.91901 0.80236 0.92143 0.88068 0.90632 0.88416 0.88444 0.92490 0.94098 0.93411 0.95991 0.92520 0.93908 0.94836 0.94571 0.98926 0.93875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.18 37.16 0.34 -0.56 16 2 C -0.02 -0.13 3.38 -91.77 -0.31 -0.44 16 3 C -0.15 -0.86 8.81 37.16 0.33 -0.53 16 4 C 0.02 0.19 6.20 -82.16 -0.51 -0.32 16 5 C -0.15 -1.63 10.14 -38.94 -0.39 -2.03 16 6 C -0.07 -0.91 6.88 -36.31 -0.25 -1.16 16 7 C 0.60 8.31 7.67 -12.48 -0.10 8.21 16 8 O -0.52 -8.29 16.48 5.29 0.09 -8.20 16 9 N -0.59 -7.86 2.84 -182.82 -0.52 -8.37 16 10 C 0.07 0.88 9.43 59.85 0.56 1.44 16 11 C 0.12 1.63 5.81 -4.05 -0.02 1.60 16 12 C 0.05 0.73 6.28 37.16 0.23 0.97 16 13 O -0.37 -6.86 8.84 -35.23 -0.31 -7.17 16 14 C 0.04 0.85 6.28 37.15 0.23 1.09 16 15 C 0.15 3.16 6.11 -4.04 -0.02 3.14 16 16 N -0.60 -15.02 2.89 -181.12 -0.52 -15.54 16 17 C 0.18 4.35 8.60 59.85 0.51 4.86 16 18 C -0.26 -6.99 9.66 -15.06 -0.15 -7.14 16 19 H 0.06 1.72 7.83 -52.49 -0.41 1.30 16 20 C 0.00 0.09 5.21 -17.43 -0.09 0.00 16 21 N -0.90 -26.17 10.50 55.49 0.58 -25.59 16 22 Si 0.90 21.83 29.56 -169.99 -5.02 16.80 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 O 0.12 1.51 8.01 15.58 0.12 1.64 16 27 N -0.35 -4.32 12.04 33.52 0.40 -3.92 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.35 7.49 -51.93 -0.39 -0.04 16 35 H 0.18 1.60 7.66 -52.49 -0.40 1.20 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.43 7.25 -51.93 -0.38 1.05 16 38 H 0.08 0.92 5.46 -51.93 -0.28 0.63 16 39 H 0.10 1.33 8.07 -51.93 -0.42 0.91 16 40 H 0.10 1.23 7.37 -51.93 -0.38 0.85 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 1.11 8.04 -51.93 -0.42 0.69 16 46 H 0.04 0.83 7.86 -51.93 -0.41 0.42 16 47 H 0.03 0.89 7.34 -51.93 -0.38 0.51 16 48 H 0.04 0.97 7.28 -51.93 -0.38 0.59 16 49 H -0.01 -0.17 7.84 -51.93 -0.41 -0.58 16 50 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 409.49 15.07 6.17 6.17 Total: -1.00 -31.86 409.49 -7.08 -38.94 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -8.44 Total: -3.90 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 0.37 Total: 9.13 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.06 Total: -53.42 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.10 Total: -13.73 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.86 -7.08 -38.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656871128.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.768 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds