Wall clock time and date at job start Sat Apr 11 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 110.45429 * 2 1 4 4 O 1.21275 * 120.00263 * 237.38979 * 3 2 1 5 5 N 1.34780 * 120.00066 * 57.39813 * 3 2 1 6 6 C 1.46498 * 119.99998 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47170 * 179.97438 * 6 5 3 8 8 N 1.46898 * 109.47458 * 180.02562 * 7 6 5 9 9 C 1.46898 * 111.00069 * 169.99991 * 8 7 6 10 10 C 1.50694 * 109.47133 * 283.95174 * 9 8 7 11 11 O 1.21296 * 119.99851 * 4.47446 * 10 9 8 12 12 N 1.34769 * 120.00280 * 184.47612 * 10 9 8 13 13 C 1.37102 * 120.00357 * 179.97438 * 12 10 9 14 14 H 1.08003 * 119.99798 * 0.02562 * 13 12 10 15 15 C 1.38950 * 120.00273 * 179.97438 * 13 12 10 16 16 N 1.31418 * 119.99739 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00103 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47053 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47255 * 120.00107 * 17 15 13 20 20 H 1.48501 * 109.47118 * 240.00151 * 17 15 13 21 21 C 1.46904 * 110.99446 * 293.95266 * 8 7 6 22 22 C 1.53002 * 117.49718 * 247.78278 * 21 8 7 23 23 C 1.52995 * 60.00295 * 252.51120 * 22 21 8 24 24 C 1.54507 * 110.51357 * 237.39762 * 2 1 3 25 25 C 1.54479 * 104.06050 * 241.21984 * 24 2 1 26 26 O 1.44429 * 104.80368 * 23.97499 * 25 24 2 27 27 C 1.44419 * 105.27426 * 319.48999 * 26 25 24 28 28 H 1.09006 * 109.47004 * 60.69766 * 1 2 3 29 29 H 1.08998 * 109.47204 * 180.69453 * 1 2 3 30 30 H 1.09001 * 109.47343 * 300.70512 * 1 2 3 31 31 H 0.97006 * 120.00049 * 359.97438 * 5 3 2 32 32 H 1.09003 * 109.46912 * 299.99384 * 6 5 3 33 33 H 1.08998 * 109.47632 * 59.99965 * 6 5 3 34 34 H 1.09003 * 109.46880 * 299.99624 * 7 6 5 35 35 H 1.09002 * 109.47125 * 59.99386 * 7 6 5 36 36 H 1.08995 * 109.47676 * 43.95498 * 9 8 7 37 37 H 1.09006 * 109.46601 * 163.95602 * 9 8 7 38 38 H 0.97006 * 120.00132 * 0.02562 * 12 10 9 39 39 H 0.96998 * 119.99203 * 180.02562 * 16 15 13 40 40 H 1.08998 * 115.55237 * 33.49374 * 21 8 7 41 41 H 1.09006 * 117.49751 * 0.02562 * 22 21 8 42 42 H 1.09003 * 117.50231 * 145.01913 * 22 21 8 43 43 H 1.08996 * 117.50139 * 252.51471 * 23 22 21 44 44 H 1.09002 * 117.51630 * 107.47943 * 23 22 21 45 45 H 1.09004 * 110.50787 * 359.86252 * 24 2 1 46 46 H 1.08995 * 110.51250 * 122.43706 * 24 2 1 47 47 H 1.09003 * 110.37244 * 142.80709 * 25 24 2 48 48 H 1.08997 * 110.36916 * 265.14791 * 25 24 2 49 49 H 1.08997 * 110.37514 * 281.67778 * 27 26 25 50 50 H 1.09007 * 110.36849 * 159.34550 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4120 0.0000 4 8 2.7989 1.7824 -0.8847 5 7 1.7029 2.2632 0.9833 6 6 2.2153 3.6356 0.9836 7 6 1.6647 4.3853 2.1984 8 7 2.1780 5.7617 2.1984 9 6 1.4917 6.5795 3.2074 10 6 0.1168 6.9431 2.7089 11 8 -0.2857 6.4924 1.6571 12 7 -0.6655 7.7689 3.4315 13 6 -1.9161 8.1001 2.9777 14 1 -2.2745 7.6988 2.0412 15 6 -2.7229 8.9512 3.7230 16 7 -2.2869 9.4391 4.8627 17 14 -4.4271 9.4018 3.1050 18 1 -4.6773 8.7264 1.8063 19 1 -5.4442 8.9647 4.0948 20 1 -4.5144 10.8729 2.9223 21 6 3.6323 5.7811 2.4054 22 6 4.1510 6.3691 3.7192 23 6 4.3268 7.1445 2.4121 24 6 2.0715 -0.7797 -1.2191 25 6 2.8787 -1.9393 -0.5945 26 8 2.3118 -2.1165 0.7220 27 6 2.0742 -0.7807 1.2168 28 1 -0.3633 0.5030 -0.8962 29 1 -0.3633 -1.0276 0.0125 30 1 -0.3634 0.5247 0.8836 31 1 1.1090 1.9670 1.6908 32 1 3.3042 3.6169 1.0307 33 1 1.8997 4.1416 0.0712 34 1 0.5759 4.4041 2.1509 35 1 1.9800 3.8795 3.1111 36 1 1.4040 6.0142 4.1351 37 1 2.0646 7.4890 3.3889 38 1 -0.3435 8.1297 4.2724 39 1 -2.8503 10.0329 5.3832 40 1 4.1790 4.9399 1.9795 41 1 3.4132 6.7412 4.4302 42 1 5.0392 5.9146 4.1581 43 1 5.3305 7.2000 1.9908 44 1 3.7047 8.0269 2.2624 45 1 1.2491 -1.1672 -1.8205 46 1 2.7181 -0.1432 -1.8230 47 1 2.7574 -2.8474 -1.1852 48 1 3.9326 -1.6714 -0.5209 49 1 3.0048 -0.3351 1.5683 50 1 1.3349 -0.7987 2.0177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663763106.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:05 Heat of formation + Delta-G solvation = -80.411413 kcal Electronic energy + Delta-G solvation = -29945.919328 eV Core-core repulsion = 25781.355737 eV Total energy + Delta-G solvation = -4164.563592 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.90685 -39.43047 -38.60621 -37.52392 -35.43526 -34.11993 -33.91079 -33.08756 -31.28324 -30.28680 -29.17954 -26.94505 -26.46711 -24.38329 -23.55579 -23.04029 -22.33064 -22.07583 -20.37016 -19.76830 -18.86032 -17.87787 -17.68383 -16.85129 -16.65862 -16.16095 -15.77978 -15.49759 -15.43725 -15.13358 -14.89223 -14.54093 -14.14534 -14.03091 -13.97041 -13.73737 -13.50700 -13.11634 -12.85803 -12.69124 -12.58879 -12.47217 -12.32387 -11.96922 -11.60440 -11.54931 -11.43792 -11.41479 -11.31028 -11.16923 -11.08885 -11.01545 -10.68622 -10.36949 -10.29875 -10.25070 -10.12139 -9.89094 -9.53144 -9.14763 -8.47102 -7.99840 -7.86268 -6.44672 -3.85461 2.42909 2.86717 3.13950 3.24939 3.31828 3.58170 3.75505 3.86676 3.99092 4.01369 4.21495 4.36859 4.44061 4.64120 4.77665 4.84364 4.85785 4.90759 4.93841 5.00661 5.15626 5.17873 5.19495 5.25241 5.29425 5.34368 5.43148 5.45686 5.53548 5.59141 5.62480 5.66889 5.71565 5.76489 5.81235 5.91863 5.98307 6.08161 6.11346 6.17740 6.22551 6.30987 6.37326 7.10341 7.24415 7.32726 7.52678 8.03178 8.03613 8.58350 9.15399 9.51136 10.02680 10.73103 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011741 B = 0.002480 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.267184 B =11289.833471 C =13011.740576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 C 0.527 3.473 4 O -0.535 6.535 5 N -0.722 5.722 6 C 0.125 3.875 7 C 0.051 3.949 8 N -0.477 5.477 9 C 0.042 3.958 10 C 0.443 3.557 11 O -0.576 6.576 12 N -0.565 5.565 13 C -0.297 4.297 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.929 3.071 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.281 1.281 21 C 0.019 3.981 22 C -0.225 4.225 23 C -0.171 4.171 24 C -0.144 4.144 25 C 0.045 3.955 26 O -0.370 6.370 27 C 0.060 3.940 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.400 0.600 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.034 0.966 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.391 0.609 39 H 0.271 0.729 40 H 0.120 0.880 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.102 0.898 47 H 0.094 0.906 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.346 -17.430 -2.836 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.120 4.120 3 C 0.312 3.688 4 O -0.412 6.412 5 N -0.373 5.373 6 C 0.002 3.998 7 C -0.077 4.077 8 N -0.199 5.199 9 C -0.089 4.089 10 C 0.228 3.772 11 O -0.460 6.460 12 N -0.202 5.202 13 C -0.427 4.427 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.543 5.543 17 Si 0.756 3.244 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.207 1.207 21 C -0.091 4.091 22 C -0.264 4.264 23 C -0.209 4.209 24 C -0.182 4.182 25 C -0.032 4.032 26 O -0.289 6.289 27 C -0.017 4.017 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.234 0.766 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.224 0.776 39 H 0.081 0.919 40 H 0.138 0.862 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.118 0.882 45 H 0.101 0.899 46 H 0.120 0.880 47 H 0.112 0.888 48 H 0.080 0.920 49 H 0.082 0.918 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.345 -17.318 -4.422 21.170 hybrid contribution -0.710 0.477 1.420 1.658 sum 10.635 -16.840 -3.002 20.142 Atomic orbital electron populations 1.21852 0.91032 1.03323 1.03165 1.22179 0.98554 0.93025 0.98200 1.20153 0.80585 0.86662 0.81411 1.90684 1.36420 1.77734 1.36345 1.45901 1.50747 1.12787 1.27885 1.21346 0.98171 0.80149 1.00166 1.22236 1.02304 0.87812 0.95364 1.61221 1.00605 1.10149 1.47901 1.21993 0.95692 0.98299 0.92923 1.19736 0.86436 0.84248 0.86784 1.90520 1.74603 1.56877 1.23955 1.41867 1.14880 1.41734 1.21691 1.19734 0.90416 1.25800 1.06726 0.87877 1.25260 1.00229 0.96852 0.95637 1.69622 1.38131 1.33165 1.13402 0.85812 0.81472 0.78254 0.78889 1.19219 1.20778 1.20741 1.22799 0.88840 0.97952 0.99471 1.23620 1.04016 1.06434 0.92309 1.23072 1.01559 0.96073 1.00198 1.23046 1.01228 0.96917 0.96967 1.23467 0.97103 0.98861 0.83765 1.89131 1.83128 1.25272 1.31352 1.23445 1.00433 0.82785 0.95073 0.91446 0.90831 0.91635 0.76568 0.91753 0.89957 0.88303 0.94798 0.92782 0.88920 0.77556 0.91928 0.86228 0.88150 0.89034 0.88556 0.88236 0.89937 0.88010 0.88760 0.92036 0.91848 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.18 37.16 0.30 -0.78 16 2 C -0.12 -1.06 0.89 -154.09 -0.14 -1.20 16 3 C 0.53 6.33 6.41 -10.98 -0.07 6.26 16 4 O -0.54 -8.39 15.28 5.56 0.08 -8.31 16 5 N -0.72 -7.94 5.44 -60.29 -0.33 -8.27 16 6 C 0.13 1.65 5.67 -4.04 -0.02 1.63 16 7 C 0.05 0.71 4.68 -3.82 -0.02 0.69 16 8 N -0.48 -7.45 4.31 -228.08 -0.98 -8.44 16 9 C 0.04 0.71 4.12 -4.98 -0.02 0.69 16 10 C 0.44 10.05 7.52 -10.99 -0.08 9.97 16 11 O -0.58 -14.99 14.62 5.54 0.08 -14.91 16 12 N -0.56 -13.90 5.29 -10.96 -0.06 -13.95 16 13 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 14 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 15 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 16 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 17 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 21 C 0.02 0.24 5.83 -67.71 -0.39 -0.16 16 22 C -0.22 -2.50 9.56 -26.73 -0.26 -2.76 16 23 C -0.17 -2.04 9.90 -26.73 -0.26 -2.30 16 24 C -0.14 -1.28 6.32 -25.16 -0.16 -1.44 16 25 C 0.04 0.37 7.63 37.93 0.29 0.65 16 26 O -0.37 -3.65 11.65 -35.23 -0.41 -4.06 16 27 C 0.06 0.50 6.72 37.93 0.25 0.76 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.46 7.49 -51.93 -0.39 0.07 16 31 H 0.40 3.46 7.79 -40.82 -0.32 3.14 16 32 H 0.06 0.82 6.40 -51.93 -0.33 0.49 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.10 1.65 6.59 -51.93 -0.34 1.31 16 35 H 0.03 0.41 8.12 -51.93 -0.42 -0.02 16 36 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 37 H 0.09 1.47 5.52 -51.93 -0.29 1.18 16 38 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 39 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.12 1.36 6.34 -51.93 -0.33 1.03 16 41 H 0.10 1.17 6.06 -51.93 -0.31 0.86 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.10 1.33 7.41 -51.93 -0.38 0.94 16 45 H 0.08 0.64 7.73 -51.93 -0.40 0.23 16 46 H 0.10 1.07 6.50 -51.93 -0.34 0.74 16 47 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.54 7.86 -51.93 -0.41 0.13 16 50 H 0.10 0.66 7.88 -51.93 -0.41 0.25 16 LS Contribution 399.01 15.07 6.01 6.01 Total: -1.00 -32.78 399.01 -8.59 -41.37 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -7.87 Total: 13.98 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -0.82 Total: 4.24 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.65 Total: -54.07 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.24 Total: -27.27 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.78 -8.59 -41.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663763106.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.043 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds