Wall clock time and date at job start Sat Apr 11 2020 05:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 110.45429 * 2 1 4 4 O 1.21275 * 120.00263 * 237.38979 * 3 2 1 5 5 N 1.34780 * 120.00066 * 57.39813 * 3 2 1 6 6 C 1.46498 * 119.99998 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47170 * 179.97438 * 6 5 3 8 8 N 1.46898 * 109.47458 * 180.02562 * 7 6 5 9 9 C 1.46898 * 111.00069 * 169.99991 * 8 7 6 10 10 C 1.50694 * 109.47133 * 283.95174 * 9 8 7 11 11 O 1.21296 * 119.99851 * 4.47446 * 10 9 8 12 12 N 1.34769 * 120.00280 * 184.47612 * 10 9 8 13 13 C 1.37102 * 120.00357 * 179.97438 * 12 10 9 14 14 H 1.08003 * 119.99798 * 0.02562 * 13 12 10 15 15 C 1.38950 * 120.00273 * 179.97438 * 13 12 10 16 16 N 1.31418 * 119.99739 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00103 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47053 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47255 * 120.00107 * 17 15 13 20 20 H 1.48501 * 109.47118 * 240.00151 * 17 15 13 21 21 C 1.46904 * 110.99446 * 293.95266 * 8 7 6 22 22 C 1.53002 * 117.49718 * 247.78278 * 21 8 7 23 23 C 1.52995 * 60.00295 * 252.51120 * 22 21 8 24 24 C 1.54507 * 110.51357 * 237.39762 * 2 1 3 25 25 C 1.54479 * 104.06050 * 241.21984 * 24 2 1 26 26 O 1.44429 * 104.80368 * 23.97499 * 25 24 2 27 27 C 1.44419 * 105.27426 * 319.48999 * 26 25 24 28 28 H 1.09006 * 109.47004 * 60.69766 * 1 2 3 29 29 H 1.08998 * 109.47204 * 180.69453 * 1 2 3 30 30 H 1.09001 * 109.47343 * 300.70512 * 1 2 3 31 31 H 0.97006 * 120.00049 * 359.97438 * 5 3 2 32 32 H 1.09003 * 109.46912 * 299.99384 * 6 5 3 33 33 H 1.08998 * 109.47632 * 59.99965 * 6 5 3 34 34 H 1.09003 * 109.46880 * 299.99624 * 7 6 5 35 35 H 1.09002 * 109.47125 * 59.99386 * 7 6 5 36 36 H 1.08995 * 109.47676 * 43.95498 * 9 8 7 37 37 H 1.09006 * 109.46601 * 163.95602 * 9 8 7 38 38 H 0.97006 * 120.00132 * 0.02562 * 12 10 9 39 39 H 0.96998 * 119.99203 * 180.02562 * 16 15 13 40 40 H 1.08998 * 115.55237 * 33.49374 * 21 8 7 41 41 H 1.09006 * 117.49751 * 0.02562 * 22 21 8 42 42 H 1.09003 * 117.50231 * 145.01913 * 22 21 8 43 43 H 1.08996 * 117.50139 * 252.51471 * 23 22 21 44 44 H 1.09002 * 117.51630 * 107.47943 * 23 22 21 45 45 H 1.09004 * 110.50787 * 359.86252 * 24 2 1 46 46 H 1.08995 * 110.51250 * 122.43706 * 24 2 1 47 47 H 1.09003 * 110.37244 * 142.80709 * 25 24 2 48 48 H 1.08997 * 110.36916 * 265.14791 * 25 24 2 49 49 H 1.08997 * 110.37514 * 281.67778 * 27 26 25 50 50 H 1.09007 * 110.36849 * 159.34550 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4120 0.0000 4 8 2.7989 1.7824 -0.8847 5 7 1.7029 2.2632 0.9833 6 6 2.2153 3.6356 0.9836 7 6 1.6647 4.3853 2.1984 8 7 2.1780 5.7617 2.1984 9 6 1.4917 6.5795 3.2074 10 6 0.1168 6.9431 2.7089 11 8 -0.2857 6.4924 1.6571 12 7 -0.6655 7.7689 3.4315 13 6 -1.9161 8.1001 2.9777 14 1 -2.2745 7.6988 2.0412 15 6 -2.7229 8.9512 3.7230 16 7 -2.2869 9.4391 4.8627 17 14 -4.4271 9.4018 3.1050 18 1 -4.6773 8.7264 1.8063 19 1 -5.4442 8.9647 4.0948 20 1 -4.5144 10.8729 2.9223 21 6 3.6323 5.7811 2.4054 22 6 4.1510 6.3691 3.7192 23 6 4.3268 7.1445 2.4121 24 6 2.0715 -0.7797 -1.2191 25 6 2.8787 -1.9393 -0.5945 26 8 2.3118 -2.1165 0.7220 27 6 2.0742 -0.7807 1.2168 28 1 -0.3633 0.5030 -0.8962 29 1 -0.3633 -1.0276 0.0125 30 1 -0.3634 0.5247 0.8836 31 1 1.1090 1.9670 1.6908 32 1 3.3042 3.6169 1.0307 33 1 1.8997 4.1416 0.0712 34 1 0.5759 4.4041 2.1509 35 1 1.9800 3.8795 3.1111 36 1 1.4040 6.0142 4.1351 37 1 2.0646 7.4890 3.3889 38 1 -0.3435 8.1297 4.2724 39 1 -2.8503 10.0329 5.3832 40 1 4.1790 4.9399 1.9795 41 1 3.4132 6.7412 4.4302 42 1 5.0392 5.9146 4.1581 43 1 5.3305 7.2000 1.9908 44 1 3.7047 8.0269 2.2624 45 1 1.2491 -1.1672 -1.8205 46 1 2.7181 -0.1432 -1.8230 47 1 2.7574 -2.8474 -1.1852 48 1 3.9326 -1.6714 -0.5209 49 1 3.0048 -0.3351 1.5683 50 1 1.3349 -0.7987 2.0177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663763106.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:04 Heat of formation + Delta-G solvation = -105.541331 kcal Electronic energy + Delta-G solvation = -29947.009043 eV Core-core repulsion = 25781.355737 eV Total energy + Delta-G solvation = -4165.653307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.76323 -40.75365 -39.55277 -39.06308 -36.49440 -35.94527 -34.83717 -34.17968 -33.26199 -31.13394 -30.29678 -27.98465 -27.54111 -26.12744 -24.50008 -23.81358 -23.24608 -23.02256 -21.73273 -20.81378 -20.32909 -19.70188 -18.57422 -18.22536 -17.54584 -17.09485 -16.85210 -16.70000 -16.50899 -16.31663 -16.00733 -15.92300 -15.64135 -15.62087 -14.92336 -14.82543 -14.46169 -14.27577 -14.20161 -13.65395 -13.54655 -13.48956 -13.34039 -13.24544 -13.07468 -12.96709 -12.55706 -12.41255 -12.35768 -12.29151 -12.25205 -12.11815 -12.00906 -11.80759 -11.73036 -11.48029 -11.23240 -10.88160 -10.79927 -10.27793 -10.18512 -9.99180 -9.06341 -8.45964 -5.94102 1.36226 1.41863 1.47011 1.55409 1.89495 2.06795 2.28563 2.66703 2.95486 2.98646 3.20820 3.26940 3.44934 3.63949 3.70609 3.75242 3.90542 3.96087 4.03752 4.08913 4.16464 4.18465 4.20361 4.28097 4.35499 4.46868 4.51268 4.54357 4.63682 4.70808 4.79569 4.80869 4.82864 4.84845 4.93322 4.96767 4.97919 5.04296 5.09815 5.18548 5.27136 5.31686 5.42045 5.70210 5.83847 6.05723 6.16133 6.41596 6.61499 7.10062 7.14406 7.57759 8.13643 8.71575 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011741 B = 0.002480 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.267184 B =11289.833471 C =13011.740576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 C 0.525 3.475 4 O -0.576 6.576 5 N -0.712 5.712 6 C 0.138 3.862 7 C 0.060 3.940 8 N -0.503 5.503 9 C 0.058 3.942 10 C 0.442 3.558 11 O -0.613 6.613 12 N -0.575 5.575 13 C -0.328 4.328 14 H 0.078 0.922 15 C -0.013 4.013 16 N -0.920 5.920 17 Si 0.990 3.010 18 H -0.274 1.274 19 H -0.270 1.270 20 H -0.273 1.273 21 C 0.008 3.992 22 C -0.206 4.206 23 C -0.177 4.177 24 C -0.145 4.145 25 C 0.045 3.955 26 O -0.383 6.383 27 C 0.062 3.938 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.414 0.586 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.395 0.605 39 H 0.277 0.723 40 H 0.134 0.866 41 H 0.096 0.904 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.081 0.919 47 H 0.114 0.886 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.879 -18.524 -1.469 22.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 C 0.312 3.688 4 O -0.456 6.456 5 N -0.364 5.364 6 C 0.014 3.986 7 C -0.068 4.068 8 N -0.225 5.225 9 C -0.073 4.073 10 C 0.229 3.771 11 O -0.499 6.499 12 N -0.213 5.213 13 C -0.458 4.458 14 H 0.096 0.904 15 C -0.213 4.213 16 N -0.562 5.562 17 Si 0.814 3.186 18 H -0.199 1.199 19 H -0.195 1.195 20 H -0.198 1.198 21 C -0.101 4.101 22 C -0.245 4.245 23 C -0.215 4.215 24 C -0.183 4.183 25 C -0.031 4.031 26 O -0.302 6.302 27 C -0.016 4.016 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.250 0.750 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.229 0.771 39 H 0.086 0.914 40 H 0.152 0.848 41 H 0.115 0.885 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.100 0.900 47 H 0.132 0.868 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.885 -18.419 -3.013 22.127 hybrid contribution -0.818 0.813 0.948 1.492 sum 11.067 -17.607 -2.066 20.898 Atomic orbital electron populations 1.21870 0.89913 1.04262 1.03152 1.22184 0.99281 0.90971 0.99023 1.20702 0.79789 0.87723 0.80626 1.90667 1.38342 1.78708 1.37874 1.45807 1.50603 1.11820 1.28154 1.21067 0.98505 0.80832 0.98214 1.22098 1.00343 0.87605 0.96769 1.61103 1.02509 1.10840 1.48070 1.21795 0.92120 0.99606 0.93730 1.20783 0.88081 0.82455 0.85808 1.90496 1.75955 1.57813 1.25634 1.41928 1.14614 1.42586 1.22145 1.19649 0.92202 1.27324 1.06586 0.90431 1.25994 1.03382 0.96224 0.95672 1.69677 1.39340 1.33258 1.13890 0.84911 0.77373 0.78120 0.78188 1.19891 1.19520 1.19830 1.22873 0.86860 0.98955 1.01389 1.23652 1.04433 1.04981 0.91433 1.23135 1.02109 0.94962 1.01291 1.23051 1.01440 0.96920 0.96885 1.23551 0.96804 0.99353 0.83422 1.89120 1.83250 1.25882 1.31940 1.23531 1.00968 0.82086 0.94969 0.92514 0.89397 0.90648 0.74979 0.90890 0.93591 0.91422 0.91898 0.90455 0.87595 0.77091 0.91373 0.84816 0.88540 0.86669 0.86642 0.90129 0.88744 0.90001 0.86842 0.92141 0.92006 0.85937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.18 71.98 0.59 -1.36 16 2 C -0.11 -1.93 0.89 -51.91 -0.05 -1.97 16 3 C 0.52 12.55 6.41 87.66 0.56 13.11 16 4 O -0.58 -18.55 15.28 -3.01 -0.05 -18.59 16 5 N -0.71 -15.33 5.44 -463.06 -2.52 -17.85 16 6 C 0.14 3.65 5.67 86.38 0.49 4.14 16 7 C 0.06 1.64 4.68 86.30 0.40 2.04 16 8 N -0.50 -15.38 4.31 -875.50 -3.78 -19.16 16 9 C 0.06 1.93 4.12 85.56 0.35 2.28 16 10 C 0.44 20.43 7.52 87.66 0.66 21.09 16 11 O -0.61 -33.09 14.62 -3.08 -0.05 -33.13 16 12 N -0.57 -28.87 5.29 -306.99 -1.62 -30.49 16 13 C -0.33 -18.35 9.68 84.04 0.81 -17.54 16 14 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 15 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 16 N -0.92 -49.01 13.05 21.66 0.28 -48.73 16 17 Si 0.99 42.59 29.55 68.60 2.03 44.62 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 21 C 0.01 0.18 5.83 44.92 0.26 0.45 16 22 C -0.21 -3.97 9.56 30.59 0.29 -3.68 16 23 C -0.18 -3.89 9.90 30.59 0.30 -3.59 16 24 C -0.15 -2.50 6.32 31.61 0.20 -2.30 16 25 C 0.05 0.68 7.63 72.48 0.55 1.23 16 26 O -0.38 -6.82 11.65 -148.98 -1.74 -8.56 16 27 C 0.06 0.91 6.72 72.48 0.49 1.40 16 28 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 0.93 7.49 -2.39 -0.02 0.91 16 31 H 0.41 6.64 7.79 -92.70 -0.72 5.91 16 32 H 0.07 1.81 6.40 -2.39 -0.02 1.79 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 2.30 6.59 -2.39 -0.02 2.28 16 35 H 0.06 1.36 8.12 -2.39 -0.02 1.34 16 36 H 0.08 2.21 7.82 -2.39 -0.02 2.20 16 37 H 0.11 3.24 5.52 -2.38 -0.01 3.22 16 38 H 0.40 18.84 7.90 -92.70 -0.73 18.11 16 39 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 40 H 0.13 2.73 6.34 -2.39 -0.02 2.72 16 41 H 0.10 1.97 6.06 -2.38 -0.01 1.95 16 42 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.08 2.09 7.41 -2.39 -0.02 2.07 16 45 H 0.09 1.36 7.73 -2.39 -0.02 1.34 16 46 H 0.08 1.77 6.50 -2.39 -0.02 1.76 16 47 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.06 0.94 7.86 -2.39 -0.02 0.92 16 50 H 0.12 1.27 7.88 -2.38 -0.02 1.25 16 Total: -1.00 -72.71 399.01 -1.53 -74.24 By element: Atomic # 1 Polarization: 43.05 SS G_CDS: -0.48 Total: 42.57 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 6.39 Total: 15.08 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -7.64 Total: -116.22 kcal Atomic # 8 Polarization: -58.45 SS G_CDS: -1.83 Total: -60.28 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -72.71 -1.53 -74.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663763106.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.300 kcal (2) G-P(sol) polarization free energy of solvation -72.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds