Wall clock time and date at job start Sat Apr 11 2020 05:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50707 * 110.45672 * 2 1 4 4 O 1.21278 * 119.99914 * 118.85060 * 3 2 1 5 5 N 1.34776 * 119.99864 * 298.84645 * 3 2 1 6 6 C 1.46495 * 120.00080 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.47052 * 179.97438 * 6 5 3 8 8 N 1.46900 * 109.46770 * 179.97438 * 7 6 5 9 9 C 1.46902 * 110.99846 * 189.99988 * 8 7 6 10 10 C 1.50705 * 109.46955 * 75.77500 * 9 8 7 11 11 O 1.21294 * 119.99539 * 5.56375 * 10 9 8 12 12 N 1.34767 * 119.99854 * 185.28784 * 10 9 8 13 13 C 1.37102 * 119.99931 * 180.27260 * 12 10 9 14 14 H 1.07993 * 120.00013 * 0.02562 * 13 12 10 15 15 C 1.38953 * 120.00168 * 180.02562 * 13 12 10 16 16 N 1.31413 * 120.00098 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99772 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47040 * 90.00098 * 17 15 13 19 19 H 1.48500 * 109.46912 * 210.00014 * 17 15 13 20 20 H 1.48500 * 109.47357 * 330.00022 * 17 15 13 21 21 C 1.46903 * 111.00098 * 66.05119 * 8 7 6 22 22 C 1.52999 * 117.49979 * 261.59609 * 21 8 7 23 23 C 1.52996 * 117.50366 * 192.97145 * 21 8 7 24 24 C 1.54504 * 110.62615 * 122.68211 * 2 1 3 25 25 C 1.54484 * 104.06178 * 118.70484 * 24 2 1 26 26 O 1.44420 * 104.80161 * 336.01763 * 25 24 2 27 27 C 1.44430 * 105.27574 * 40.51355 * 26 25 24 28 28 H 1.08995 * 109.47118 * 59.30005 * 1 2 3 29 29 H 1.08999 * 109.47343 * 179.29913 * 1 2 3 30 30 H 1.09005 * 109.47171 * 299.30328 * 1 2 3 31 31 H 0.97004 * 119.99636 * 0.02562 * 5 3 2 32 32 H 1.08998 * 109.47253 * 60.00294 * 6 5 3 33 33 H 1.08997 * 109.47173 * 300.00238 * 6 5 3 34 34 H 1.09005 * 109.46823 * 60.00751 * 7 6 5 35 35 H 1.08997 * 109.47393 * 300.00186 * 7 6 5 36 36 H 1.08993 * 109.47359 * 315.77482 * 9 8 7 37 37 H 1.09001 * 109.46973 * 195.76969 * 9 8 7 38 38 H 0.97005 * 120.00661 * 0.27311 * 12 10 9 39 39 H 0.96994 * 119.99872 * 179.97438 * 16 15 13 40 40 H 1.09006 * 115.54632 * 47.29774 * 21 8 7 41 41 H 1.09006 * 117.49945 * 359.97438 * 22 21 8 42 42 H 1.08999 * 117.50243 * 145.01477 * 22 21 8 43 43 H 1.09001 * 117.50261 * 214.97978 * 23 21 8 44 44 H 1.09000 * 117.49778 * 0.02562 * 23 21 8 45 45 H 1.08998 * 110.51268 * 237.34258 * 24 2 1 46 46 H 1.08999 * 110.51749 * 0.05597 * 24 2 1 47 47 H 1.09000 * 110.37139 * 217.18837 * 25 24 2 48 48 H 1.08998 * 110.37387 * 94.85126 * 25 24 2 49 49 H 1.08997 * 110.37267 * 200.65121 * 27 26 25 50 50 H 1.08998 * 110.37094 * 78.31913 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4120 0.0000 4 8 2.7435 1.8030 0.9199 5 7 1.7646 2.2402 -1.0224 6 6 2.2761 3.6129 -1.0222 7 6 1.8029 4.3337 -2.2861 8 7 2.3153 5.7104 -2.2855 9 6 1.6937 6.5040 -3.3541 10 6 0.2879 6.8713 -2.9541 11 8 -0.1186 6.5956 -1.8451 12 7 -0.5155 7.5110 -3.8268 13 6 -1.7926 7.8502 -3.4610 14 1 -2.1545 7.6051 -2.4735 15 6 -2.6212 8.5093 -4.3608 16 7 -3.8451 8.8349 -4.0100 17 14 -1.9949 8.9339 -6.0687 18 1 -2.2921 7.8139 -6.9975 19 1 -2.6669 10.1676 -6.5498 20 1 -0.5277 9.1576 -6.0165 21 6 3.7797 5.7272 -2.4012 22 6 4.5883 5.8934 -1.1131 23 6 4.4962 7.0479 -2.1128 24 6 2.0743 -0.7808 1.2171 25 6 2.8801 -1.9399 0.5896 26 8 2.3101 -2.1159 -0.7256 27 6 2.0712 -0.7796 -1.2188 28 1 -0.3633 0.5246 -0.8836 29 1 -0.3634 -1.0276 -0.0126 30 1 -0.3634 0.5030 0.8962 31 1 1.2150 1.9275 -1.7580 32 1 3.3657 3.5947 -1.0012 33 1 1.9046 4.1390 -0.1428 34 1 0.7132 4.3521 -2.3074 35 1 2.1747 3.8076 -3.1652 36 1 1.6688 5.9190 -4.2735 37 1 2.2742 7.4121 -3.5168 38 1 -0.1904 7.7316 -4.7137 39 1 -4.4233 9.2953 -4.6381 40 1 4.1971 5.0875 -3.1789 41 1 4.0338 5.9907 -0.1797 42 1 5.5380 5.3629 -1.0429 43 1 5.3852 7.2770 -2.7004 44 1 3.8811 7.9043 -1.8368 45 1 2.7244 -0.1456 1.8187 46 1 1.2534 -1.1689 1.8201 47 1 2.7603 -2.8484 1.1798 48 1 3.9339 -1.6719 0.5137 49 1 1.3302 -0.7969 -2.0179 50 1 3.0010 -0.3337 -1.5721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663763107.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:11 Heat of formation + Delta-G solvation = -78.722177 kcal Electronic energy + Delta-G solvation = -30042.216116 eV Core-core repulsion = 25877.725776 eV Total energy + Delta-G solvation = -4164.490341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.90205 -39.24006 -38.58254 -37.62652 -35.35804 -34.20140 -33.91350 -33.40206 -31.68656 -30.34404 -29.27406 -26.94598 -26.51431 -24.12054 -23.50179 -23.02373 -22.34426 -21.94789 -20.48625 -19.65839 -19.30448 -18.27681 -17.73600 -16.65078 -16.39082 -16.07837 -15.93795 -15.70607 -15.39540 -15.15487 -14.89351 -14.72686 -14.46041 -14.12891 -13.89772 -13.58750 -13.46633 -13.13873 -12.88621 -12.78218 -12.65005 -12.55007 -12.34310 -12.20537 -11.80617 -11.60112 -11.50325 -11.46872 -11.37247 -11.29868 -11.11443 -11.07554 -10.62511 -10.42875 -10.20386 -10.12316 -9.99268 -9.87746 -9.57670 -9.14720 -8.65295 -8.20209 -8.09666 -6.33071 -3.84570 2.43781 2.86737 3.00135 3.03832 3.12800 3.57530 3.68300 3.74613 3.84659 3.99554 4.07908 4.37215 4.44225 4.64934 4.71412 4.83412 4.85061 4.87729 4.91692 5.00769 5.07132 5.17035 5.18170 5.24867 5.30317 5.34343 5.43346 5.46588 5.48642 5.55624 5.62439 5.64030 5.66848 5.74736 5.76567 5.82347 5.89380 5.99451 6.05604 6.10710 6.23172 6.29140 6.37047 6.99322 7.20602 7.32419 7.56380 8.03939 8.12345 8.58498 8.93591 9.40570 9.81943 10.80105 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012424 B = 0.002539 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.158137 B =11025.894333 C =12464.632972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 C 0.527 3.473 4 O -0.535 6.535 5 N -0.723 5.723 6 C 0.126 3.874 7 C 0.053 3.947 8 N -0.483 5.483 9 C 0.047 3.953 10 C 0.451 3.549 11 O -0.556 6.556 12 N -0.593 5.593 13 C -0.304 4.304 14 H 0.119 0.881 15 C 0.041 3.959 16 N -0.882 5.882 17 Si 0.879 3.121 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.269 1.269 21 C -0.001 4.001 22 C -0.161 4.161 23 C -0.170 4.170 24 C -0.143 4.143 25 C 0.044 3.956 26 O -0.370 6.370 27 C 0.059 3.941 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.399 0.601 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.033 0.967 36 H 0.050 0.950 37 H 0.093 0.907 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.061 0.939 49 H 0.101 0.899 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.879 -16.842 1.482 23.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.119 4.119 3 C 0.312 3.688 4 O -0.411 6.411 5 N -0.374 5.374 6 C 0.003 3.997 7 C -0.075 4.075 8 N -0.207 5.207 9 C -0.084 4.084 10 C 0.236 3.764 11 O -0.437 6.437 12 N -0.233 5.233 13 C -0.432 4.432 14 H 0.137 0.863 15 C -0.162 4.162 16 N -0.522 5.522 17 Si 0.705 3.295 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.195 1.195 21 C -0.110 4.110 22 C -0.199 4.199 23 C -0.207 4.207 24 C -0.181 4.181 25 C -0.032 4.032 26 O -0.289 6.289 27 C -0.019 4.019 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.233 0.767 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.202 0.798 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.101 0.899 47 H 0.112 0.888 48 H 0.079 0.921 49 H 0.119 0.881 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 15.713 -16.603 3.190 23.081 hybrid contribution 0.237 0.299 -2.543 2.572 sum 15.951 -16.304 0.647 22.818 Atomic orbital electron populations 1.21842 0.90942 1.03330 1.03214 1.22177 0.98607 0.93017 0.98141 1.20148 0.80034 0.86727 0.81867 1.90683 1.38440 1.76721 1.35274 1.45914 1.54065 1.13411 1.24044 1.21312 0.98874 0.80117 0.99419 1.22209 1.01957 0.87891 0.95422 1.61123 1.02030 1.11177 1.46340 1.21876 0.95794 0.98551 0.92196 1.19681 0.86407 0.83906 0.86395 1.90574 1.75346 1.56802 1.20955 1.42226 1.13671 1.53438 1.13960 1.19412 0.86108 1.34906 1.02808 0.86308 1.25035 0.95449 0.97342 0.98356 1.69619 1.06503 1.40000 1.36058 0.86685 0.78887 0.79208 0.84675 1.19698 1.20186 1.19496 1.22452 0.87409 1.01421 0.99734 1.23061 1.00500 1.01630 0.94672 1.23034 1.01762 0.92717 1.03182 1.23043 1.01231 0.96870 0.96978 1.23474 0.97044 0.98910 0.83803 1.89132 1.82990 1.25261 1.31486 1.23466 1.00422 0.82823 0.95139 0.91607 0.90819 0.91441 0.76664 0.91288 0.90147 0.88831 0.94889 0.93160 0.88849 0.79791 0.91624 0.89826 0.87881 0.89005 0.88845 0.87978 0.88028 0.89896 0.88754 0.92073 0.88106 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.21 37.16 0.31 -0.80 16 2 C -0.12 -1.07 0.88 -154.09 -0.14 -1.20 16 3 C 0.53 6.33 6.40 -10.98 -0.07 6.25 16 4 O -0.53 -8.34 15.29 5.56 0.08 -8.26 16 5 N -0.72 -7.92 5.42 -60.30 -0.33 -8.25 16 6 C 0.13 1.65 5.50 -4.04 -0.02 1.62 16 7 C 0.05 0.72 4.72 -3.82 -0.02 0.70 16 8 N -0.48 -7.17 4.15 -228.08 -0.95 -8.12 16 9 C 0.05 0.74 5.45 -4.97 -0.03 0.72 16 10 C 0.45 9.83 7.33 -10.99 -0.08 9.75 16 11 O -0.56 -14.41 15.09 5.55 0.08 -14.32 16 12 N -0.59 -13.69 5.09 -10.96 -0.06 -13.75 16 13 C -0.30 -8.41 10.16 -14.93 -0.15 -8.56 16 14 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 15 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 16 N -0.88 -25.46 13.96 55.50 0.77 -24.69 16 17 Si 0.88 18.99 27.74 -169.99 -4.71 14.28 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 21 C 0.00 -0.02 4.25 -67.71 -0.29 -0.30 16 22 C -0.16 -1.79 9.34 -26.73 -0.25 -2.04 16 23 C -0.17 -1.85 9.72 -26.73 -0.26 -2.11 16 24 C -0.14 -1.28 6.32 -25.16 -0.16 -1.44 16 25 C 0.04 0.36 7.63 37.94 0.29 0.65 16 26 O -0.37 -3.64 11.65 -35.23 -0.41 -4.05 16 27 C 0.06 0.49 6.66 37.93 0.25 0.74 16 28 H 0.06 0.48 7.71 -51.93 -0.40 0.08 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.40 3.43 8.02 -40.82 -0.33 3.10 16 32 H 0.07 0.89 6.63 -51.93 -0.34 0.54 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.09 1.51 6.89 -51.93 -0.36 1.15 16 35 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 36 H 0.05 0.69 8.00 -51.93 -0.42 0.27 16 37 H 0.09 1.34 7.35 -51.93 -0.38 0.96 16 38 H 0.37 7.49 5.76 -40.82 -0.24 7.25 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.10 1.27 8.12 -51.93 -0.42 0.85 16 45 H 0.10 1.07 6.51 -51.93 -0.34 0.73 16 46 H 0.08 0.64 7.74 -51.93 -0.40 0.24 16 47 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.10 0.66 7.87 -51.93 -0.41 0.25 16 50 H 0.06 0.53 7.86 -51.93 -0.41 0.12 16 LS Contribution 402.73 15.07 6.07 6.07 Total: -1.00 -34.16 402.73 -8.38 -42.54 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -8.22 Total: 13.55 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -0.71 Total: 5.00 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.56 Total: -54.80 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.24 Total: -26.63 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.71 Total: 14.28 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.16 -8.38 -42.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663763107.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.186 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds