Wall clock time and date at job start Sat Apr 11 2020 05:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50707 * 110.45672 * 2 1 4 4 O 1.21278 * 119.99914 * 118.85060 * 3 2 1 5 5 N 1.34776 * 119.99864 * 298.84645 * 3 2 1 6 6 C 1.46495 * 120.00080 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.47052 * 179.97438 * 6 5 3 8 8 N 1.46900 * 109.46770 * 179.97438 * 7 6 5 9 9 C 1.46902 * 110.99846 * 189.99988 * 8 7 6 10 10 C 1.50705 * 109.46955 * 75.77500 * 9 8 7 11 11 O 1.21294 * 119.99539 * 5.56375 * 10 9 8 12 12 N 1.34767 * 119.99854 * 185.28784 * 10 9 8 13 13 C 1.37102 * 119.99931 * 180.27260 * 12 10 9 14 14 H 1.07993 * 120.00013 * 0.02562 * 13 12 10 15 15 C 1.38953 * 120.00168 * 180.02562 * 13 12 10 16 16 N 1.31413 * 120.00098 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99772 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47040 * 90.00098 * 17 15 13 19 19 H 1.48500 * 109.46912 * 210.00014 * 17 15 13 20 20 H 1.48500 * 109.47357 * 330.00022 * 17 15 13 21 21 C 1.46903 * 111.00098 * 66.05119 * 8 7 6 22 22 C 1.52999 * 117.49979 * 261.59609 * 21 8 7 23 23 C 1.52996 * 117.50366 * 192.97145 * 21 8 7 24 24 C 1.54504 * 110.62615 * 122.68211 * 2 1 3 25 25 C 1.54484 * 104.06178 * 118.70484 * 24 2 1 26 26 O 1.44420 * 104.80161 * 336.01763 * 25 24 2 27 27 C 1.44430 * 105.27574 * 40.51355 * 26 25 24 28 28 H 1.08995 * 109.47118 * 59.30005 * 1 2 3 29 29 H 1.08999 * 109.47343 * 179.29913 * 1 2 3 30 30 H 1.09005 * 109.47171 * 299.30328 * 1 2 3 31 31 H 0.97004 * 119.99636 * 0.02562 * 5 3 2 32 32 H 1.08998 * 109.47253 * 60.00294 * 6 5 3 33 33 H 1.08997 * 109.47173 * 300.00238 * 6 5 3 34 34 H 1.09005 * 109.46823 * 60.00751 * 7 6 5 35 35 H 1.08997 * 109.47393 * 300.00186 * 7 6 5 36 36 H 1.08993 * 109.47359 * 315.77482 * 9 8 7 37 37 H 1.09001 * 109.46973 * 195.76969 * 9 8 7 38 38 H 0.97005 * 120.00661 * 0.27311 * 12 10 9 39 39 H 0.96994 * 119.99872 * 179.97438 * 16 15 13 40 40 H 1.09006 * 115.54632 * 47.29774 * 21 8 7 41 41 H 1.09006 * 117.49945 * 359.97438 * 22 21 8 42 42 H 1.08999 * 117.50243 * 145.01477 * 22 21 8 43 43 H 1.09001 * 117.50261 * 214.97978 * 23 21 8 44 44 H 1.09000 * 117.49778 * 0.02562 * 23 21 8 45 45 H 1.08998 * 110.51268 * 237.34258 * 24 2 1 46 46 H 1.08999 * 110.51749 * 0.05597 * 24 2 1 47 47 H 1.09000 * 110.37139 * 217.18837 * 25 24 2 48 48 H 1.08998 * 110.37387 * 94.85126 * 25 24 2 49 49 H 1.08997 * 110.37267 * 200.65121 * 27 26 25 50 50 H 1.08998 * 110.37094 * 78.31913 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4120 0.0000 4 8 2.7435 1.8030 0.9199 5 7 1.7646 2.2402 -1.0224 6 6 2.2761 3.6129 -1.0222 7 6 1.8029 4.3337 -2.2861 8 7 2.3153 5.7104 -2.2855 9 6 1.6937 6.5040 -3.3541 10 6 0.2879 6.8713 -2.9541 11 8 -0.1186 6.5956 -1.8451 12 7 -0.5155 7.5110 -3.8268 13 6 -1.7926 7.8502 -3.4610 14 1 -2.1545 7.6051 -2.4735 15 6 -2.6212 8.5093 -4.3608 16 7 -3.8451 8.8349 -4.0100 17 14 -1.9949 8.9339 -6.0687 18 1 -2.2921 7.8139 -6.9975 19 1 -2.6669 10.1676 -6.5498 20 1 -0.5277 9.1576 -6.0165 21 6 3.7797 5.7272 -2.4012 22 6 4.5883 5.8934 -1.1131 23 6 4.4962 7.0479 -2.1128 24 6 2.0743 -0.7808 1.2171 25 6 2.8801 -1.9399 0.5896 26 8 2.3101 -2.1159 -0.7256 27 6 2.0712 -0.7796 -1.2188 28 1 -0.3633 0.5246 -0.8836 29 1 -0.3634 -1.0276 -0.0126 30 1 -0.3634 0.5030 0.8962 31 1 1.2150 1.9275 -1.7580 32 1 3.3657 3.5947 -1.0012 33 1 1.9046 4.1390 -0.1428 34 1 0.7132 4.3521 -2.3074 35 1 2.1747 3.8076 -3.1652 36 1 1.6688 5.9190 -4.2735 37 1 2.2742 7.4121 -3.5168 38 1 -0.1904 7.7316 -4.7137 39 1 -4.4233 9.2953 -4.6381 40 1 4.1971 5.0875 -3.1789 41 1 4.0338 5.9907 -0.1797 42 1 5.5380 5.3629 -1.0429 43 1 5.3852 7.2770 -2.7004 44 1 3.8811 7.9043 -1.8368 45 1 2.7244 -0.1456 1.8187 46 1 1.2534 -1.1689 1.8201 47 1 2.7603 -2.8484 1.1798 48 1 3.9339 -1.6719 0.5137 49 1 1.3302 -0.7969 -2.0179 50 1 3.0010 -0.3337 -1.5721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663763107.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:08 Heat of formation + Delta-G solvation = -106.321353 kcal Electronic energy + Delta-G solvation = -30043.412906 eV Core-core repulsion = 25877.725776 eV Total energy + Delta-G solvation = -4165.687131 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.75948 -40.60681 -39.57845 -38.96004 -36.39253 -35.97910 -34.92498 -34.44710 -33.71541 -31.19128 -30.31408 -28.07306 -27.54699 -25.78510 -24.46783 -23.78589 -23.24878 -22.86454 -21.56652 -21.16898 -20.55452 -20.08508 -18.56060 -17.82365 -17.48759 -17.07490 -16.95725 -16.84653 -16.63128 -16.22045 -16.02435 -15.86019 -15.75707 -15.44333 -14.94733 -14.75258 -14.58394 -14.38703 -14.22689 -14.07055 -13.95147 -13.54833 -13.29774 -13.13877 -13.05188 -12.93411 -12.55155 -12.44663 -12.37682 -12.29352 -12.26508 -12.02781 -11.97934 -11.81940 -11.47728 -11.35701 -11.11180 -10.87056 -10.79827 -10.37592 -10.22451 -10.18397 -9.26418 -8.39542 -6.00160 1.31178 1.36373 1.45458 1.47204 1.91088 1.99363 2.24287 2.56291 2.89060 2.95408 3.16726 3.22048 3.28031 3.64977 3.74938 3.78578 3.93019 3.98621 4.08195 4.12034 4.17576 4.19607 4.20794 4.27717 4.43276 4.47541 4.50258 4.53522 4.63259 4.70079 4.76876 4.79492 4.81616 4.84685 4.93435 4.96732 4.96945 5.03629 5.13526 5.16949 5.30757 5.36106 5.54529 5.70048 5.86069 5.99539 6.20924 6.41419 6.62230 6.91247 7.10158 7.42919 8.01039 8.78251 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012424 B = 0.002539 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.158137 B =11025.894333 C =12464.632972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 C 0.525 3.475 4 O -0.576 6.576 5 N -0.713 5.713 6 C 0.139 3.861 7 C 0.061 3.939 8 N -0.513 5.513 9 C 0.061 3.939 10 C 0.451 3.549 11 O -0.606 6.606 12 N -0.594 5.594 13 C -0.324 4.324 14 H 0.053 0.947 15 C -0.017 4.017 16 N -0.937 5.937 17 Si 0.964 3.036 18 H -0.256 1.256 19 H -0.278 1.278 20 H -0.230 1.230 21 C -0.003 4.003 22 C -0.164 4.164 23 C -0.161 4.161 24 C -0.145 4.145 25 C 0.045 3.955 26 O -0.383 6.383 27 C 0.061 3.939 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.413 0.587 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.389 0.611 39 H 0.278 0.722 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.114 0.886 43 H 0.123 0.877 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.113 0.887 48 H 0.061 0.939 49 H 0.122 0.878 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.631 -17.925 -2.069 25.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 C 0.311 3.689 4 O -0.455 6.455 5 N -0.365 5.365 6 C 0.015 3.985 7 C -0.067 4.067 8 N -0.238 5.238 9 C -0.070 4.070 10 C 0.239 3.761 11 O -0.489 6.489 12 N -0.236 5.236 13 C -0.453 4.453 14 H 0.072 0.928 15 C -0.215 4.215 16 N -0.578 5.578 17 Si 0.784 3.216 18 H -0.180 1.180 19 H -0.203 1.203 20 H -0.154 1.154 21 C -0.111 4.111 22 C -0.202 4.202 23 C -0.198 4.198 24 C -0.183 4.183 25 C -0.031 4.031 26 O -0.302 6.302 27 C -0.016 4.016 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.250 0.750 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.135 0.865 38 H 0.224 0.776 39 H 0.088 0.912 40 H 0.129 0.871 41 H 0.094 0.906 42 H 0.132 0.868 43 H 0.141 0.859 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.112 0.888 47 H 0.131 0.869 48 H 0.080 0.920 49 H 0.140 0.860 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 18.484 -17.708 -0.380 25.600 hybrid contribution -0.645 0.613 -1.237 1.524 sum 17.838 -17.095 -1.617 24.760 Atomic orbital electron populations 1.21859 0.90032 1.04232 1.03055 1.22182 0.99164 0.91036 0.99091 1.20699 0.79233 0.87789 0.81146 1.90666 1.40373 1.77722 1.36778 1.45827 1.53830 1.12491 1.24369 1.21033 0.98957 0.80721 0.97780 1.22089 1.00000 0.87938 0.96658 1.60952 1.04208 1.11792 1.46828 1.21749 0.91314 1.00374 0.93514 1.20959 0.88442 0.81484 0.85234 1.90560 1.76977 1.58066 1.23327 1.42045 1.12224 1.54150 1.15176 1.18962 0.88798 1.36688 1.00895 0.92849 1.26115 0.95160 0.96256 1.03972 1.69809 1.08477 1.41031 1.38446 0.85374 0.80354 0.78977 0.76868 1.18009 1.20308 1.15369 1.22571 0.85272 1.02633 1.00601 1.23051 1.01053 1.02541 0.93550 1.23085 1.02227 0.91592 1.02927 1.23047 1.01417 0.96925 0.96894 1.23554 0.96791 0.99326 0.83441 1.89120 1.83123 1.25874 1.32060 1.23551 1.01036 0.82095 0.94925 0.90744 0.89357 0.92685 0.75044 0.90651 0.94213 0.92092 0.91394 0.89515 0.86538 0.77559 0.91240 0.87057 0.90615 0.86804 0.85909 0.89930 0.89990 0.88847 0.86875 0.92029 0.85979 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.21 71.98 0.59 -1.46 16 2 C -0.11 -1.96 0.88 -51.91 -0.05 -2.01 16 3 C 0.52 12.68 6.40 87.66 0.56 13.24 16 4 O -0.58 -18.67 15.29 -3.02 -0.05 -18.72 16 5 N -0.71 -15.41 5.42 -463.07 -2.51 -17.92 16 6 C 0.14 3.66 5.50 86.38 0.48 4.14 16 7 C 0.06 1.59 4.72 86.30 0.41 2.00 16 8 N -0.51 -14.48 4.15 -875.50 -3.64 -18.12 16 9 C 0.06 1.78 5.45 85.56 0.47 2.24 16 10 C 0.45 19.73 7.33 87.66 0.64 20.37 16 11 O -0.61 -33.02 15.09 -3.07 -0.05 -33.07 16 12 N -0.59 -27.22 5.09 -306.99 -1.56 -28.78 16 13 C -0.32 -18.71 10.16 84.04 0.85 -17.86 16 14 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 15 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 16 N -0.94 -56.18 13.96 21.66 0.30 -55.88 16 17 Si 0.96 37.97 27.74 68.60 1.90 39.87 16 18 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 19 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.23 -7.56 6.52 99.48 0.65 -6.91 16 21 C 0.00 -0.06 4.25 44.91 0.19 0.13 16 22 C -0.16 -3.39 9.34 30.59 0.29 -3.11 16 23 C -0.16 -3.06 9.72 30.59 0.30 -2.77 16 24 C -0.14 -2.52 6.32 31.61 0.20 -2.32 16 25 C 0.05 0.68 7.63 72.49 0.55 1.23 16 26 O -0.38 -6.78 11.65 -148.98 -1.74 -8.51 16 27 C 0.06 0.90 6.66 72.48 0.48 1.38 16 28 H 0.07 0.99 7.71 -2.39 -0.02 0.98 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.41 6.59 8.02 -92.71 -0.74 5.85 16 32 H 0.08 1.89 6.63 -2.39 -0.02 1.88 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.99 6.89 -2.38 -0.02 1.97 16 35 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 36 H 0.09 1.95 8.00 -2.39 -0.02 1.93 16 37 H 0.12 2.90 7.35 -2.39 -0.02 2.88 16 38 H 0.39 14.63 5.76 -92.70 -0.53 14.09 16 39 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.08 1.92 8.12 -2.39 -0.02 1.90 16 45 H 0.08 1.79 6.51 -2.39 -0.02 1.77 16 46 H 0.09 1.39 7.74 -2.39 -0.02 1.37 16 47 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.12 1.26 7.87 -2.39 -0.02 1.24 16 50 H 0.06 0.94 7.86 -2.39 -0.02 0.92 16 Total: -1.00 -82.13 402.73 -1.28 -83.42 By element: Atomic # 1 Polarization: 43.34 SS G_CDS: -0.38 Total: 42.96 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 6.43 Total: 14.75 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -7.41 Total: -120.69 kcal Atomic # 8 Polarization: -58.47 SS G_CDS: -1.83 Total: -60.30 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 1.90 Total: 39.87 kcal Total: -82.13 -1.28 -83.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663763107.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.904 kcal (2) G-P(sol) polarization free energy of solvation -82.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds