Wall clock time and date at job start Sat Apr 11 2020 05:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47019 * 2 1 4 4 C 1.52999 * 109.47221 * 120.00377 * 2 1 3 5 5 C 1.52993 * 109.47340 * 73.77579 * 4 2 1 6 6 C 1.50703 * 110.43610 * 174.36508 * 5 4 2 7 7 O 1.21280 * 119.99733 * 357.29386 * 6 5 4 8 8 N 1.34777 * 120.00129 * 177.29906 * 6 5 4 9 9 C 1.46495 * 119.99917 * 179.72144 * 8 6 5 10 10 C 1.53004 * 109.47139 * 180.27413 * 9 8 6 11 11 O 1.42909 * 112.94148 * 53.40991 * 10 9 8 12 12 C 1.53950 * 113.74224 * 281.67855 * 10 9 8 13 13 N 1.47577 * 86.11588 * 222.04299 * 12 10 9 14 14 C 1.36932 * 134.49366 * 204.63458 * 13 12 10 15 15 H 1.08001 * 119.99855 * 180.02562 * 14 13 12 16 16 C 1.38809 * 119.99870 * 0.02562 * 14 13 12 17 17 N 1.31614 * 120.00398 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99963 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46715 * 60.00135 * 18 16 14 20 20 H 1.48500 * 109.46968 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47502 * 299.99935 * 18 16 14 22 22 C 1.47581 * 91.01385 * 24.64159 * 13 12 10 23 23 C 1.54632 * 110.59601 * 51.74796 * 5 4 2 24 24 C 1.54484 * 101.76348 * 266.06150 * 23 5 4 25 25 N 1.46763 * 105.47429 * 334.58459 * 24 23 5 26 26 C 1.34421 * 111.29875 * 17.01771 * 25 24 23 27 27 O 1.21283 * 124.93682 * 179.62616 * 26 25 24 28 28 H 1.08998 * 109.46691 * 289.12251 * 1 2 3 29 29 H 1.08999 * 109.46871 * 49.11840 * 1 2 3 30 30 H 1.08994 * 109.47040 * 169.12090 * 1 2 3 31 31 H 1.09000 * 109.46871 * 240.00534 * 2 1 3 32 32 H 1.09000 * 109.47202 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47266 * 300.00439 * 3 2 1 34 34 H 1.09000 * 109.46863 * 60.00529 * 3 2 1 35 35 H 1.09000 * 109.47042 * 313.77572 * 4 2 1 36 36 H 1.09003 * 109.46887 * 193.77779 * 4 2 1 37 37 H 0.97002 * 119.99387 * 0.02562 * 8 6 5 38 38 H 1.08991 * 109.47226 * 300.27596 * 9 8 6 39 39 H 1.08999 * 109.47011 * 60.28271 * 9 8 6 40 40 H 0.96694 * 113.99693 * 309.66798 * 11 10 9 41 41 H 1.08996 * 113.76731 * 336.34908 * 12 10 9 42 42 H 1.08999 * 113.76314 * 107.74234 * 12 10 9 43 43 H 0.96996 * 120.00797 * 179.97438 * 17 16 14 44 44 H 1.09000 * 113.76764 * 221.05504 * 22 13 12 45 45 H 1.08997 * 113.77280 * 89.65731 * 22 13 12 46 46 H 1.09000 * 110.97051 * 24.18191 * 23 5 4 47 47 H 1.09004 * 110.97141 * 147.94810 * 23 5 4 48 48 H 1.08996 * 110.24493 * 215.58372 * 24 23 5 49 49 H 1.09002 * 110.24359 * 93.58689 * 24 23 5 50 50 H 0.96996 * 124.34774 * 197.03691 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.8301 -2.2283 1.0894 6 6 2.4485 -2.9713 2.2455 7 8 3.0541 -2.3634 3.1026 8 7 2.3287 -4.3112 2.3270 9 6 2.9351 -5.0341 3.4477 10 6 2.6592 -6.5315 3.2978 11 8 3.0577 -7.0468 2.0258 12 6 1.2373 -6.9451 3.7190 13 7 1.8752 -8.1088 4.3646 14 6 1.4541 -9.3652 4.7096 15 1 2.1373 -10.0513 5.1881 16 6 0.1491 -9.7570 4.4444 17 7 -0.6836 -8.9208 3.8618 18 14 -0.4252 -11.4713 4.9145 19 1 -0.2866 -11.6547 6.3817 20 1 -1.8489 -11.6398 4.5273 21 1 0.4031 -12.4818 4.2089 22 6 3.1493 -7.3744 4.4891 23 6 2.4242 -2.7212 -0.2505 24 6 1.1928 -2.6622 -1.1816 25 7 0.0277 -2.7929 -0.2988 26 6 0.3557 -2.5491 0.9818 27 8 -0.4180 -2.5821 1.9153 28 1 -0.3633 0.3367 0.9710 29 1 -0.3633 0.6726 -0.7770 30 1 -0.3633 -1.0091 -0.1939 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.4909 -0.3685 2.1221 36 1 3.1022 -0.5143 1.3800 37 1 1.8447 -4.7974 1.6412 38 1 4.0112 -4.8615 3.4516 39 1 2.5064 -4.6777 4.3844 40 1 2.7271 -6.5367 1.2738 41 1 0.7690 -6.2551 4.4209 42 1 0.5901 -7.2070 2.8820 43 1 -1.5954 -9.1946 3.6761 44 1 4.0285 -7.9793 4.2672 45 1 3.2426 -6.8106 5.4173 46 1 3.2095 -2.0506 -0.5993 47 1 2.7963 -3.7418 -0.1603 48 1 1.2197 -3.4857 -1.8951 49 1 1.1628 -1.7076 -1.7071 50 1 -0.8642 -3.0256 -0.6006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672088040.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:43 Heat of formation + Delta-G solvation = -47.007449 kcal Electronic energy + Delta-G solvation = -31630.265952 eV Core-core repulsion = 27467.150865 eV Total energy + Delta-G solvation = -4163.115087 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.98638 -39.49679 -38.45537 -37.21456 -35.59887 -34.88777 -34.02712 -32.53395 -31.93093 -29.07415 -28.56258 -27.35692 -26.35668 -25.25872 -24.93075 -22.85567 -22.15893 -21.64463 -20.53136 -19.53085 -19.19645 -17.97426 -17.49077 -17.10727 -16.68515 -16.05359 -15.77552 -15.18774 -15.06284 -14.73030 -14.60561 -14.10166 -14.05500 -13.99962 -13.93396 -13.67675 -13.45665 -13.17639 -12.97451 -12.78986 -12.69689 -12.60750 -12.32784 -12.24595 -11.98361 -11.75282 -11.44171 -11.14199 -11.08691 -11.04085 -10.91043 -10.84006 -10.72457 -10.45708 -10.10069 -9.96447 -9.71068 -9.49690 -9.24219 -9.19486 -8.95298 -8.80273 -6.88352 -5.74665 -3.07006 2.26059 2.44862 2.94964 3.09906 3.41770 3.45158 3.46653 3.96609 4.01247 4.24831 4.44043 4.45129 4.47778 4.53232 4.59327 4.70406 4.85007 5.00973 5.05965 5.14740 5.23595 5.27560 5.29292 5.36757 5.39438 5.45142 5.52512 5.59646 5.64072 5.74127 5.75542 5.77454 5.90439 6.02902 6.05716 6.14165 6.28548 6.39580 6.42328 6.52670 6.56560 6.64153 7.04699 7.18445 7.39122 7.51470 7.92805 7.97364 8.07217 8.15199 9.05258 9.71909 10.58045 11.42331 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.002851 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.546501 B = 9820.438416 C =10430.678901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.107 4.107 3 C -0.146 4.146 4 C -0.081 4.081 5 C -0.114 4.114 6 C 0.539 3.461 7 O -0.528 6.528 8 N -0.718 5.718 9 C 0.103 3.897 10 C 0.063 3.937 11 O -0.525 6.525 12 C 0.145 3.855 13 N -0.602 5.602 14 C -0.220 4.220 15 H 0.081 0.919 16 C -0.008 4.008 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.137 3.863 23 C -0.126 4.126 24 C 0.094 3.906 25 N -0.729 5.729 26 C 0.537 3.463 27 O -0.502 6.502 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.396 0.604 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.359 0.641 41 H 0.035 0.965 42 H 0.077 0.923 43 H 0.254 0.746 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.103 0.897 47 H 0.090 0.910 48 H 0.087 0.913 49 H 0.084 0.916 50 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.939 19.162 -15.521 25.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.125 4.125 3 C -0.203 4.203 4 C -0.119 4.119 5 C -0.121 4.121 6 C 0.323 3.677 7 O -0.403 6.403 8 N -0.369 5.369 9 C -0.021 4.021 10 C 0.020 3.980 11 O -0.328 6.328 12 C 0.019 3.981 13 N -0.328 5.328 14 C -0.348 4.348 15 H 0.098 0.902 16 C -0.204 4.204 17 N -0.569 5.569 18 Si 0.744 3.256 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.010 3.990 23 C -0.164 4.164 24 C -0.030 4.030 25 N -0.387 5.387 26 C 0.322 3.678 27 O -0.375 6.375 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.230 0.770 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.204 0.796 41 H 0.053 0.947 42 H 0.095 0.905 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.121 0.879 47 H 0.109 0.891 48 H 0.105 0.895 49 H 0.102 0.898 50 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 6.132 18.846 -13.899 24.206 hybrid contribution -1.395 -0.778 -0.487 1.669 sum 4.737 18.069 -14.385 23.576 Atomic orbital electron populations 1.22606 0.95229 1.04485 1.02110 1.21426 0.96308 0.96572 0.98169 1.21829 1.00934 0.95678 1.01856 1.21443 1.03348 0.88297 0.98801 1.21728 0.94856 0.99456 0.96020 1.19635 0.79945 0.82136 0.85984 1.90703 1.42060 1.67370 1.40209 1.45863 1.56340 1.06861 1.27873 1.22094 0.98391 0.91871 0.89751 1.23782 0.99887 0.88350 0.85979 1.86625 1.76440 1.55827 1.13900 1.22882 0.91328 0.87370 0.96479 1.45655 1.07282 1.09559 1.70270 1.18941 0.95277 0.87135 1.33422 0.90165 1.24776 0.96029 0.98348 1.01281 1.69792 1.05454 1.34650 1.46994 0.86174 0.77603 0.83678 0.78140 1.21170 1.21582 1.21070 1.22542 0.92195 0.91954 0.92282 1.22837 0.98004 1.03630 0.91962 1.22330 0.84321 1.03196 0.93141 1.46293 1.12724 1.71686 1.08007 1.20186 0.89324 0.75412 0.82898 1.90862 1.55868 1.50178 1.40594 0.92676 0.92849 0.89917 0.90063 0.92535 0.92663 0.92616 0.90329 0.89583 0.76976 0.90881 0.90102 0.79551 0.94733 0.90497 0.93633 0.92628 0.93210 0.87850 0.89124 0.89461 0.89794 0.74368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.53 7.90 37.16 0.29 -1.24 16 2 C -0.11 -0.76 2.31 -90.62 -0.21 -0.97 16 3 C -0.15 -0.94 9.13 37.16 0.34 -0.60 16 4 C -0.08 -0.79 3.40 -26.73 -0.09 -0.89 16 5 C -0.11 -1.18 0.72 -155.67 -0.11 -1.29 16 6 C 0.54 7.61 6.46 -10.98 -0.07 7.54 16 7 O -0.53 -9.14 15.98 5.56 0.09 -9.05 16 8 N -0.72 -9.89 4.92 -60.30 -0.30 -10.18 16 9 C 0.10 1.64 5.28 -4.04 -0.02 1.61 16 10 C 0.06 1.17 1.52 -89.69 -0.14 1.04 16 11 O -0.52 -9.48 13.51 -35.23 -0.48 -9.95 16 12 C 0.15 3.45 6.92 -2.97 -0.02 3.43 16 13 N -0.60 -15.86 3.70 -177.81 -0.66 -16.51 16 14 C -0.22 -6.35 10.70 -15.06 -0.16 -6.51 16 15 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 16 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 17 N -0.92 -27.81 11.38 55.49 0.63 -27.17 16 18 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.14 2.88 8.34 -2.98 -0.02 2.85 16 23 C -0.13 -0.77 5.62 -25.09 -0.14 -0.91 16 24 C 0.09 0.43 6.66 -3.12 -0.02 0.41 16 25 N -0.73 -5.50 4.23 -59.20 -0.25 -5.75 16 26 C 0.54 6.37 4.53 -10.86 -0.05 6.32 16 27 O -0.50 -8.52 17.86 5.55 0.10 -8.43 16 28 H 0.05 0.56 7.96 -51.93 -0.41 0.15 16 29 H 0.05 0.37 8.10 -51.93 -0.42 -0.05 16 30 H 0.08 0.69 3.39 -51.93 -0.18 0.51 16 31 H 0.08 0.42 4.19 -51.93 -0.22 0.20 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.96 7.94 -51.93 -0.41 0.55 16 36 H 0.09 0.83 7.87 -51.93 -0.41 0.42 16 37 H 0.40 4.86 6.73 -40.82 -0.27 4.58 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.39 8.04 -51.93 -0.42 0.98 16 40 H 0.36 4.80 7.61 45.56 0.35 5.15 16 41 H 0.04 0.86 8.03 -51.93 -0.42 0.44 16 42 H 0.08 2.02 7.15 -51.93 -0.37 1.64 16 43 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.05 0.97 8.10 -51.93 -0.42 0.55 16 46 H 0.10 0.45 7.32 -51.93 -0.38 0.07 16 47 H 0.09 0.52 7.39 -51.93 -0.38 0.14 16 48 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 49 H 0.08 0.27 5.62 -51.93 -0.29 -0.02 16 50 H 0.42 2.68 8.96 -40.82 -0.37 2.32 16 LS Contribution 386.84 15.07 5.83 5.83 Total: -1.00 -37.79 386.84 -7.68 -45.47 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -7.11 Total: 7.71 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -0.52 Total: 10.47 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.57 Total: -59.62 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.29 Total: -27.43 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.79 -7.68 -45.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672088040.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.533 kcal (2) G-P(sol) polarization free energy of solvation -37.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds