Wall clock time and date at job start Sat Apr 11 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47019 * 2 1 4 4 C 1.52999 * 109.47221 * 120.00377 * 2 1 3 5 5 C 1.52993 * 109.47340 * 73.77579 * 4 2 1 6 6 C 1.50703 * 110.43610 * 174.36508 * 5 4 2 7 7 O 1.21280 * 119.99733 * 357.29386 * 6 5 4 8 8 N 1.34777 * 120.00129 * 177.29906 * 6 5 4 9 9 C 1.46495 * 119.99917 * 179.72144 * 8 6 5 10 10 C 1.53004 * 109.47139 * 180.27413 * 9 8 6 11 11 O 1.42909 * 112.94148 * 53.40991 * 10 9 8 12 12 C 1.53950 * 113.74224 * 281.67855 * 10 9 8 13 13 N 1.47577 * 86.11588 * 222.04299 * 12 10 9 14 14 C 1.36932 * 134.49366 * 204.63458 * 13 12 10 15 15 H 1.08001 * 119.99855 * 180.02562 * 14 13 12 16 16 C 1.38809 * 119.99870 * 0.02562 * 14 13 12 17 17 N 1.31614 * 120.00398 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99963 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46715 * 60.00135 * 18 16 14 20 20 H 1.48500 * 109.46968 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47502 * 299.99935 * 18 16 14 22 22 C 1.47581 * 91.01385 * 24.64159 * 13 12 10 23 23 C 1.54632 * 110.59601 * 51.74796 * 5 4 2 24 24 C 1.54484 * 101.76348 * 266.06150 * 23 5 4 25 25 N 1.46763 * 105.47429 * 334.58459 * 24 23 5 26 26 C 1.34421 * 111.29875 * 17.01771 * 25 24 23 27 27 O 1.21283 * 124.93682 * 179.62616 * 26 25 24 28 28 H 1.08998 * 109.46691 * 289.12251 * 1 2 3 29 29 H 1.08999 * 109.46871 * 49.11840 * 1 2 3 30 30 H 1.08994 * 109.47040 * 169.12090 * 1 2 3 31 31 H 1.09000 * 109.46871 * 240.00534 * 2 1 3 32 32 H 1.09000 * 109.47202 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47266 * 300.00439 * 3 2 1 34 34 H 1.09000 * 109.46863 * 60.00529 * 3 2 1 35 35 H 1.09000 * 109.47042 * 313.77572 * 4 2 1 36 36 H 1.09003 * 109.46887 * 193.77779 * 4 2 1 37 37 H 0.97002 * 119.99387 * 0.02562 * 8 6 5 38 38 H 1.08991 * 109.47226 * 300.27596 * 9 8 6 39 39 H 1.08999 * 109.47011 * 60.28271 * 9 8 6 40 40 H 0.96694 * 113.99693 * 309.66798 * 11 10 9 41 41 H 1.08996 * 113.76731 * 336.34908 * 12 10 9 42 42 H 1.08999 * 113.76314 * 107.74234 * 12 10 9 43 43 H 0.96996 * 120.00797 * 179.97438 * 17 16 14 44 44 H 1.09000 * 113.76764 * 221.05504 * 22 13 12 45 45 H 1.08997 * 113.77280 * 89.65731 * 22 13 12 46 46 H 1.09000 * 110.97051 * 24.18191 * 23 5 4 47 47 H 1.09004 * 110.97141 * 147.94810 * 23 5 4 48 48 H 1.08996 * 110.24493 * 215.58372 * 24 23 5 49 49 H 1.09002 * 110.24359 * 93.58689 * 24 23 5 50 50 H 0.96996 * 124.34774 * 197.03691 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.8301 -2.2283 1.0894 6 6 2.4485 -2.9713 2.2455 7 8 3.0541 -2.3634 3.1026 8 7 2.3287 -4.3112 2.3270 9 6 2.9351 -5.0341 3.4477 10 6 2.6592 -6.5315 3.2978 11 8 3.0577 -7.0468 2.0258 12 6 1.2373 -6.9451 3.7190 13 7 1.8752 -8.1088 4.3646 14 6 1.4541 -9.3652 4.7096 15 1 2.1373 -10.0513 5.1881 16 6 0.1491 -9.7570 4.4444 17 7 -0.6836 -8.9208 3.8618 18 14 -0.4252 -11.4713 4.9145 19 1 -0.2866 -11.6547 6.3817 20 1 -1.8489 -11.6398 4.5273 21 1 0.4031 -12.4818 4.2089 22 6 3.1493 -7.3744 4.4891 23 6 2.4242 -2.7212 -0.2505 24 6 1.1928 -2.6622 -1.1816 25 7 0.0277 -2.7929 -0.2988 26 6 0.3557 -2.5491 0.9818 27 8 -0.4180 -2.5821 1.9153 28 1 -0.3633 0.3367 0.9710 29 1 -0.3633 0.6726 -0.7770 30 1 -0.3633 -1.0091 -0.1939 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.4909 -0.3685 2.1221 36 1 3.1022 -0.5143 1.3800 37 1 1.8447 -4.7974 1.6412 38 1 4.0112 -4.8615 3.4516 39 1 2.5064 -4.6777 4.3844 40 1 2.7271 -6.5367 1.2738 41 1 0.7690 -6.2551 4.4209 42 1 0.5901 -7.2070 2.8820 43 1 -1.5954 -9.1946 3.6761 44 1 4.0285 -7.9793 4.2672 45 1 3.2426 -6.8106 5.4173 46 1 3.2095 -2.0506 -0.5993 47 1 2.7963 -3.7418 -0.1603 48 1 1.2197 -3.4857 -1.8951 49 1 1.1628 -1.7076 -1.7071 50 1 -0.8642 -3.0256 -0.6006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672088040.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:42 Heat of formation + Delta-G solvation = -78.826391 kcal Electronic energy + Delta-G solvation = -31631.645725 eV Core-core repulsion = 27467.150865 eV Total energy + Delta-G solvation = -4164.494860 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.81918 -40.91416 -39.83166 -38.12845 -36.61221 -36.19556 -35.32240 -34.06039 -33.25033 -30.32106 -29.61653 -27.98949 -27.91892 -26.81419 -26.13962 -24.11389 -23.20467 -22.72787 -21.43931 -21.02104 -20.24082 -19.03268 -18.68152 -18.20463 -17.97647 -17.35153 -17.17312 -16.65470 -16.30537 -15.97579 -15.74035 -15.47088 -15.34364 -15.03448 -14.84049 -14.68667 -14.47259 -14.44102 -14.23820 -13.93693 -13.89306 -13.49196 -13.35975 -13.20382 -13.00961 -12.95832 -12.82305 -12.63404 -12.59451 -12.29570 -11.99164 -11.83522 -11.80526 -11.73649 -11.51535 -11.44517 -11.00203 -10.98838 -10.89033 -10.76934 -10.24781 -9.84232 -8.97836 -7.92988 -5.27147 1.27984 1.42963 1.43732 1.47290 1.53178 1.91118 2.35472 2.44426 2.99162 3.20597 3.25215 3.28818 3.32729 3.50009 3.56157 3.78171 3.83373 3.89979 4.02554 4.12226 4.25214 4.32046 4.48248 4.63709 4.66484 4.70156 4.73205 4.75563 4.81775 4.87039 4.91818 4.97468 5.00462 5.04563 5.08685 5.12397 5.13439 5.18418 5.26626 5.29721 5.44487 5.45081 5.53041 5.75885 5.87751 5.92641 6.26876 6.76284 6.87264 6.99677 7.13750 7.56472 8.49402 9.23283 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.002851 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.546501 B = 9820.438416 C =10430.678901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.079 4.079 5 C -0.111 4.111 6 C 0.534 3.466 7 O -0.565 6.565 8 N -0.713 5.713 9 C 0.117 3.883 10 C 0.101 3.899 11 O -0.533 6.533 12 C 0.143 3.857 13 N -0.634 5.634 14 C -0.236 4.236 15 H 0.085 0.915 16 C -0.068 4.068 17 N -0.953 5.953 18 Si 0.983 3.017 19 H -0.278 1.278 20 H -0.293 1.293 21 H -0.274 1.274 22 C 0.131 3.869 23 C -0.123 4.123 24 C 0.092 3.908 25 N -0.713 5.713 26 C 0.531 3.469 27 O -0.569 6.569 28 H 0.023 0.977 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.040 0.960 36 H 0.089 0.911 37 H 0.404 0.596 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.381 0.619 41 H 0.015 0.985 42 H 0.047 0.953 43 H 0.248 0.752 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.132 0.868 47 H 0.098 0.902 48 H 0.120 0.880 49 H 0.109 0.891 50 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.695 19.300 -18.486 27.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.117 4.117 5 C -0.118 4.118 6 C 0.320 3.680 7 O -0.443 6.443 8 N -0.365 5.365 9 C -0.008 4.008 10 C 0.058 3.942 11 O -0.339 6.339 12 C 0.017 3.983 13 N -0.360 5.360 14 C -0.364 4.364 15 H 0.103 0.897 16 C -0.261 4.261 17 N -0.602 5.602 18 Si 0.810 3.190 19 H -0.204 1.204 20 H -0.220 1.220 21 H -0.200 1.200 22 C 0.006 3.994 23 C -0.160 4.160 24 C -0.031 4.031 25 N -0.369 5.369 26 C 0.316 3.684 27 O -0.447 6.447 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.132 0.868 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.107 0.893 37 H 0.240 0.760 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.230 0.770 41 H 0.033 0.967 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.150 0.850 47 H 0.117 0.883 48 H 0.138 0.862 49 H 0.126 0.874 50 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 7.926 18.995 -16.946 26.661 hybrid contribution -1.914 -0.777 0.423 2.109 sum 6.012 18.218 -16.524 25.319 Atomic orbital electron populations 1.22612 0.96227 1.04654 1.00938 1.21434 0.95286 0.97082 0.97772 1.21842 1.01581 0.95046 1.01841 1.21440 1.03021 0.88294 0.98934 1.21747 0.94000 0.99225 0.96843 1.20321 0.79211 0.81912 0.86553 1.90680 1.43855 1.67981 1.41772 1.45779 1.56215 1.07062 1.27422 1.21785 0.99437 0.89665 0.89905 1.23092 0.95389 0.89763 0.85915 1.86576 1.76203 1.56872 1.14273 1.22789 0.93685 0.86791 0.95084 1.46050 1.09616 1.09623 1.70724 1.19376 0.95678 0.88581 1.32812 0.89720 1.25669 0.96265 1.02358 1.01818 1.69998 1.05326 1.36457 1.48423 0.85097 0.76694 0.79141 0.78055 1.20364 1.21954 1.19974 1.22782 0.90558 0.91998 0.94072 1.23034 0.99277 1.04656 0.89064 1.22689 0.81887 1.05936 0.92564 1.46329 1.14165 1.69437 1.07002 1.20486 0.89535 0.74885 0.83478 1.90826 1.57532 1.53364 1.42941 0.95772 0.91126 0.90061 0.86816 0.91531 0.91087 0.94276 0.94120 0.89255 0.76011 0.88977 0.91783 0.76988 0.96735 0.93490 0.94317 0.91736 0.91290 0.85015 0.88325 0.86227 0.87361 0.73623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.88 7.90 71.98 0.57 -2.31 16 2 C -0.10 -1.18 2.31 -10.79 -0.02 -1.20 16 3 C -0.15 -1.59 9.13 71.98 0.66 -0.93 16 4 C -0.08 -1.52 3.40 30.59 0.10 -1.41 16 5 C -0.11 -2.20 0.72 -52.94 -0.04 -2.24 16 6 C 0.53 14.99 6.46 87.66 0.57 15.56 16 7 O -0.56 -19.86 15.98 -3.03 -0.05 -19.91 16 8 N -0.71 -19.27 4.92 -463.07 -2.28 -21.55 16 9 C 0.12 3.64 5.28 86.38 0.46 4.10 16 10 C 0.10 3.74 1.52 -10.13 -0.02 3.73 16 11 O -0.53 -18.36 13.51 -148.98 -2.01 -20.37 16 12 C 0.14 6.99 6.92 86.48 0.60 7.59 16 13 N -0.63 -33.87 3.70 -720.30 -2.66 -36.53 16 14 C -0.24 -13.78 10.70 84.03 0.90 -12.88 16 15 H 0.09 4.70 7.83 -2.91 -0.02 4.67 16 16 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 17 N -0.95 -59.18 11.38 21.65 0.25 -58.94 16 18 Si 0.98 46.99 29.55 68.60 2.03 49.02 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 21 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 22 C 0.13 5.44 8.34 86.48 0.72 6.16 16 23 C -0.12 -1.02 5.62 31.65 0.18 -0.84 16 24 C 0.09 0.42 6.66 86.83 0.58 1.00 16 25 N -0.71 -9.37 4.23 -459.80 -1.94 -11.31 16 26 C 0.53 12.56 4.53 87.90 0.40 12.96 16 27 O -0.57 -20.51 17.86 -3.04 -0.05 -20.56 16 28 H 0.02 0.51 7.96 -2.39 -0.02 0.49 16 29 H 0.07 0.83 8.10 -2.39 -0.02 0.82 16 30 H 0.08 1.25 3.39 -2.39 -0.01 1.24 16 31 H 0.11 0.64 4.19 -2.39 -0.01 0.63 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.04 1.08 7.94 -2.39 -0.02 1.06 16 36 H 0.09 1.64 7.87 -2.39 -0.02 1.63 16 37 H 0.40 9.55 6.73 -92.71 -0.62 8.92 16 38 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.06 2.25 8.04 -2.39 -0.02 2.23 16 40 H 0.38 9.34 7.61 -74.06 -0.56 8.78 16 41 H 0.01 0.78 8.03 -2.39 -0.02 0.76 16 42 H 0.05 2.56 7.15 -2.39 -0.02 2.55 16 43 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 44 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.07 2.62 8.10 -2.39 -0.02 2.60 16 46 H 0.13 0.43 7.32 -2.39 -0.02 0.41 16 47 H 0.10 0.73 7.39 -2.39 -0.02 0.71 16 48 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 49 H 0.11 0.08 5.62 -2.39 -0.01 0.06 16 50 H 0.42 4.74 8.96 -92.71 -0.83 3.91 16 Total: -1.00 -87.65 386.84 -1.64 -89.29 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -1.03 Total: 25.13 kcal Atomic # 6 Polarization: 19.62 SS G_CDS: 6.11 Total: 25.74 kcal Atomic # 7 Polarization: -121.69 SS G_CDS: -6.64 Total: -128.33 kcal Atomic # 8 Polarization: -58.73 SS G_CDS: -2.11 Total: -60.85 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -87.65 -1.64 -89.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672088040.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.460 kcal (2) G-P(sol) polarization free energy of solvation -87.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds