Wall clock time and date at job start Sat Apr 11 2020 05:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46829 * 2 1 4 4 O 1.42895 * 109.47122 * 239.99849 * 2 1 3 5 5 C 1.53000 * 109.47239 * 119.99709 * 2 1 3 6 6 C 1.50706 * 109.46964 * 60.00025 * 5 2 1 7 7 O 1.21277 * 119.99728 * 0.02562 * 6 5 2 8 8 N 1.34778 * 120.00139 * 180.02562 * 6 5 2 9 9 C 1.47202 * 126.70150 * 359.97438 * 8 6 5 10 10 C 1.56127 * 106.57536 * 211.90013 * 9 8 6 11 11 H 1.09005 * 113.85966 * 102.87495 * 10 9 8 12 12 C 1.54310 * 109.29929 * 229.01347 * 10 9 8 13 13 N 1.48522 * 104.79077 * 134.89901 * 12 10 9 14 14 C 1.46899 * 111.00058 * 200.71508 * 13 12 10 15 15 C 1.50705 * 109.47142 * 170.00027 * 14 13 12 16 16 O 1.21292 * 119.99794 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99851 * 180.02562 * 15 14 13 18 18 C 1.37104 * 119.99853 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99741 * 359.97438 * 18 17 15 20 20 C 1.38946 * 120.00083 * 179.97438 * 18 17 15 21 21 N 1.31401 * 120.00309 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 119.99773 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47251 * 89.99987 * 22 20 18 24 24 H 1.48497 * 109.47029 * 209.99761 * 22 20 18 25 25 H 1.48496 * 109.47354 * 329.99770 * 22 20 18 26 26 C 1.48526 * 104.20811 * 320.26308 * 13 12 10 27 27 C 1.54301 * 104.69326 * 39.68015 * 26 13 12 28 28 H 1.09003 * 112.05429 * 97.97884 * 27 26 13 29 29 C 1.47200 * 126.70265 * 180.02562 * 8 6 5 30 30 H 1.09002 * 109.47709 * 300.00086 * 1 2 3 31 31 H 1.09001 * 109.47593 * 60.00237 * 1 2 3 32 32 H 1.09005 * 109.46986 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47068 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47169 * 299.99657 * 3 2 1 35 35 H 1.08999 * 109.47288 * 60.00236 * 3 2 1 36 36 H 0.96705 * 113.99943 * 180.02562 * 4 2 1 37 37 H 1.09002 * 109.46937 * 300.00677 * 5 2 1 38 38 H 1.08997 * 109.47179 * 179.97438 * 5 2 1 39 39 H 1.09004 * 110.06904 * 330.56131 * 9 8 6 40 40 H 1.08999 * 110.06829 * 92.08785 * 9 8 6 41 41 H 1.09002 * 110.39531 * 16.03708 * 12 10 9 42 42 H 1.09004 * 110.39250 * 253.75523 * 12 10 9 43 43 H 1.08997 * 109.47145 * 289.99880 * 14 13 12 44 44 H 1.08995 * 109.47293 * 50.00165 * 14 13 12 45 45 H 0.96999 * 120.00344 * 359.97438 * 17 15 14 46 46 H 0.96999 * 120.00438 * 179.97438 * 21 20 18 47 47 H 1.09007 * 110.39552 * 158.48355 * 26 13 12 48 48 H 1.08997 * 110.39800 * 280.75912 * 26 13 12 49 49 H 1.09002 * 110.06977 * 29.44367 * 29 8 6 50 50 H 1.08991 * 110.07176 * 267.91479 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 1.5377 -2.1420 1.2493 7 8 0.8408 -2.5388 0.3395 8 7 1.8628 -2.9718 2.2604 9 6 2.6942 -2.6482 3.4313 10 6 3.4388 -3.9625 3.8258 11 1 4.4837 -3.9871 3.5165 12 6 3.2775 -4.2049 5.3412 13 7 2.9389 -5.6460 5.4608 14 6 2.2857 -5.9285 6.7458 15 6 1.7393 -7.3329 6.7336 16 8 1.8798 -8.0298 5.7509 17 7 1.0936 -7.8142 7.8143 18 6 0.5960 -9.0917 7.8030 19 1 0.7212 -9.7122 6.9280 20 6 -0.0691 -9.5881 8.9174 21 7 -0.5465 -10.8123 8.9064 22 14 -0.2861 -8.5145 10.4307 23 1 -1.5566 -7.7537 10.3198 24 1 -0.3261 -9.3707 11.6433 25 1 0.8518 -7.5659 10.5319 26 6 2.0138 -5.8985 4.3266 27 6 2.6008 -5.0851 3.1542 28 1 3.2022 -5.7034 2.4877 29 6 1.4568 -4.3789 2.4090 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.9703 -0.7122 -1.2326 37 1 1.6766 -0.2073 2.1392 38 1 3.1300 -0.7216 1.2490 39 1 3.4233 -1.8806 3.1717 40 1 2.0656 -2.3049 4.2530 41 1 2.4703 -3.5907 5.7403 42 1 4.2107 -3.9895 5.8617 43 1 3.0120 -5.8282 7.5524 44 1 1.4699 -5.2226 6.9017 45 1 0.9809 -7.2568 8.6001 46 1 -1.0105 -11.1590 9.6844 47 1 1.9953 -6.9603 4.0806 48 1 1.0106 -5.5482 4.5694 49 1 1.3132 -4.8323 1.4282 50 1 0.5368 -4.4434 2.9897 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672412368.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:46 Heat of formation + Delta-G solvation = -97.011810 kcal Electronic energy + Delta-G solvation = -30126.240355 eV Core-core repulsion = 25960.956917 eV Total energy + Delta-G solvation = -4165.283439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.83071 -39.65415 -38.39122 -37.50697 -35.70368 -33.99199 -33.05128 -31.98528 -31.61423 -30.80461 -28.94196 -27.65624 -27.27918 -26.00102 -24.72184 -23.32499 -21.41758 -20.94124 -19.84635 -19.56746 -19.32332 -18.21718 -17.53324 -16.97699 -16.30896 -16.07809 -15.76670 -15.38055 -15.30547 -14.97515 -14.85141 -14.67534 -14.47302 -14.16258 -13.63616 -13.40423 -13.05761 -12.99572 -12.71181 -12.54684 -12.46681 -12.40763 -12.39910 -12.22213 -12.10683 -11.97669 -11.81791 -11.60702 -11.45809 -11.23679 -11.09378 -11.04736 -10.76436 -10.71469 -10.60582 -10.43425 -10.01195 -9.74558 -9.58879 -8.89532 -8.59463 -8.24976 -8.11231 -6.34778 -3.86475 2.43984 2.70990 2.99214 3.03328 3.12161 3.67291 3.86511 3.90218 4.06582 4.08556 4.26106 4.29980 4.39740 4.53880 4.59197 4.73060 4.83447 4.92394 4.95377 5.02774 5.04808 5.12860 5.17610 5.18021 5.22380 5.37491 5.44107 5.50205 5.54235 5.56026 5.59885 5.64676 5.71943 5.75913 5.78354 5.79401 5.85850 5.96209 6.05018 6.17703 6.21508 6.52890 7.00726 7.07959 7.33487 7.41731 7.53725 8.01039 8.10447 8.55188 8.90980 9.37866 9.77499 10.78129 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024094 B = 0.002029 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.815417 B =13799.906404 C =13889.493463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.144 3.856 3 C -0.178 4.178 4 O -0.543 6.543 5 C -0.166 4.166 6 C 0.530 3.470 7 O -0.516 6.516 8 N -0.621 5.621 9 C 0.105 3.895 10 C -0.098 4.098 11 H 0.100 0.900 12 C 0.035 3.965 13 N -0.487 5.487 14 C 0.032 3.968 15 C 0.450 3.550 16 O -0.562 6.562 17 N -0.588 5.588 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.879 5.879 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.269 1.269 26 C 0.041 3.959 27 C -0.104 4.104 28 H 0.096 0.904 29 C 0.110 3.890 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.368 0.632 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.050 0.950 45 H 0.370 0.630 46 H 0.274 0.726 47 H 0.119 0.881 48 H 0.040 0.960 49 H 0.081 0.919 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.116 26.391 -10.185 29.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.103 3.897 3 C -0.236 4.236 4 O -0.347 6.347 5 C -0.206 4.206 6 C 0.319 3.681 7 O -0.391 6.391 8 N -0.356 5.356 9 C -0.019 4.019 10 C -0.118 4.118 11 H 0.118 0.882 12 C -0.093 4.093 13 N -0.211 5.211 14 C -0.100 4.100 15 C 0.236 3.764 16 O -0.444 6.444 17 N -0.227 5.227 18 C -0.434 4.434 19 H 0.138 0.862 20 C -0.161 4.161 21 N -0.519 5.519 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.195 1.195 26 C -0.087 4.087 27 C -0.124 4.124 28 H 0.114 0.886 29 C -0.012 4.012 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.214 0.786 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.111 0.889 44 H 0.068 0.932 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.137 0.863 48 H 0.059 0.941 49 H 0.100 0.900 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.482 25.175 -11.429 28.642 hybrid contribution -0.259 1.348 1.920 2.361 sum 7.224 26.523 -9.508 29.087 Atomic orbital electron populations 1.21998 0.92252 1.05233 1.01547 1.20910 0.95703 0.89582 0.83506 1.22520 1.01351 0.96592 1.03144 1.86728 1.25696 1.79357 1.42922 1.22478 1.02675 0.93738 1.01685 1.20122 0.80641 0.86938 0.80445 1.90706 1.37294 1.76585 1.34530 1.48641 1.51759 1.12726 1.22492 1.22632 0.93518 0.97487 0.88233 1.23144 0.99873 0.93385 0.95366 0.88175 1.23283 1.01137 0.90045 0.94851 1.65247 1.38402 1.15796 1.01645 1.22123 0.98071 0.96422 0.93394 1.19594 0.83622 0.88516 0.84708 1.90495 1.60987 1.59751 1.33210 1.42198 1.51476 1.14775 1.14244 1.19427 1.32072 0.88308 1.03594 0.86211 1.25046 0.97071 0.96074 0.97953 1.69613 1.36848 1.14738 1.30707 0.86677 0.78826 0.80574 0.83350 1.19659 1.20119 1.19472 1.23472 0.93033 1.03476 0.88700 1.22837 0.95836 0.96200 0.97504 0.88591 1.22178 0.97077 0.80511 1.01473 0.92027 0.92181 0.89030 0.92304 0.91350 0.91500 0.78587 0.88254 0.88817 0.90703 0.91036 0.93677 0.89897 0.88943 0.93213 0.79692 0.91560 0.86300 0.94136 0.90029 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.52 37.16 0.32 -1.12 16 2 C 0.14 1.15 0.98 -90.62 -0.09 1.06 16 3 C -0.18 -0.94 8.82 37.16 0.33 -0.61 16 4 O -0.54 -5.37 11.88 -53.50 -0.64 -6.00 16 5 C -0.17 -1.16 3.93 -27.88 -0.11 -1.27 16 6 C 0.53 5.88 7.44 -10.98 -0.08 5.80 16 7 O -0.52 -7.78 13.19 -12.71 -0.17 -7.95 16 8 N -0.62 -6.42 3.32 -170.15 -0.56 -6.98 16 9 C 0.11 0.80 6.43 -1.98 -0.01 0.79 16 10 C -0.10 -0.90 4.24 -87.01 -0.37 -1.27 16 11 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 12 C 0.04 0.36 6.05 -2.24 -0.01 0.35 16 13 N -0.49 -7.25 5.33 -231.57 -1.24 -8.49 16 14 C 0.03 0.51 5.55 -4.97 -0.03 0.48 16 15 C 0.45 9.85 7.50 -10.98 -0.08 9.76 16 16 O -0.56 -14.34 13.24 5.55 0.07 -14.27 16 17 N -0.59 -13.65 5.09 -10.96 -0.06 -13.71 16 18 C -0.31 -8.48 10.16 -14.93 -0.15 -8.63 16 19 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.42 13.96 55.50 0.77 -24.64 16 22 Si 0.88 19.04 27.74 -169.99 -4.71 14.32 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 26 C 0.04 0.62 4.85 -2.24 -0.01 0.61 16 27 C -0.10 -1.22 4.03 -88.32 -0.36 -1.57 16 28 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 29 C 0.11 1.30 6.54 -3.29 -0.02 1.28 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 1.15 5.51 -51.93 -0.29 0.86 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.37 2.20 9.05 45.56 0.41 2.61 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.46 7.86 -51.93 -0.41 0.05 16 39 H 0.07 0.39 7.31 -51.93 -0.38 0.01 16 40 H 0.07 0.51 7.19 -51.93 -0.37 0.14 16 41 H 0.05 0.43 6.87 -51.93 -0.36 0.07 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.05 0.70 7.88 -51.93 -0.41 0.29 16 45 H 0.37 7.54 5.76 -40.82 -0.24 7.31 16 46 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.12 2.25 6.04 -51.93 -0.31 1.94 16 48 H 0.04 0.63 7.02 -51.93 -0.36 0.26 16 49 H 0.08 1.05 7.92 -51.93 -0.41 0.64 16 50 H 0.07 0.86 7.11 -51.93 -0.37 0.50 16 LS Contribution 387.63 15.07 5.84 5.84 Total: -1.00 -35.03 387.63 -8.74 -43.77 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -7.28 Total: 11.43 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -0.78 Total: 6.68 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -1.08 Total: -53.82 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.73 Total: -28.22 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.71 Total: 14.32 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.03 -8.74 -43.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672412368.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.242 kcal (2) G-P(sol) polarization free energy of solvation -35.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds