Wall clock time and date at job start Sat Apr 11 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46829 * 2 1 4 4 O 1.42895 * 109.47122 * 239.99849 * 2 1 3 5 5 C 1.53000 * 109.47239 * 119.99709 * 2 1 3 6 6 C 1.50706 * 109.46964 * 60.00025 * 5 2 1 7 7 O 1.21277 * 119.99728 * 0.02562 * 6 5 2 8 8 N 1.34778 * 120.00139 * 180.02562 * 6 5 2 9 9 C 1.47202 * 126.70150 * 359.97438 * 8 6 5 10 10 C 1.56127 * 106.57536 * 211.90013 * 9 8 6 11 11 H 1.09005 * 113.85966 * 102.87495 * 10 9 8 12 12 C 1.54310 * 109.29929 * 229.01347 * 10 9 8 13 13 N 1.48522 * 104.79077 * 134.89901 * 12 10 9 14 14 C 1.46899 * 111.00058 * 200.71508 * 13 12 10 15 15 C 1.50705 * 109.47142 * 170.00027 * 14 13 12 16 16 O 1.21292 * 119.99794 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99851 * 180.02562 * 15 14 13 18 18 C 1.37104 * 119.99853 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99741 * 359.97438 * 18 17 15 20 20 C 1.38946 * 120.00083 * 179.97438 * 18 17 15 21 21 N 1.31401 * 120.00309 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 119.99773 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47251 * 89.99987 * 22 20 18 24 24 H 1.48497 * 109.47029 * 209.99761 * 22 20 18 25 25 H 1.48496 * 109.47354 * 329.99770 * 22 20 18 26 26 C 1.48526 * 104.20811 * 320.26308 * 13 12 10 27 27 C 1.54301 * 104.69326 * 39.68015 * 26 13 12 28 28 H 1.09003 * 112.05429 * 97.97884 * 27 26 13 29 29 C 1.47200 * 126.70265 * 180.02562 * 8 6 5 30 30 H 1.09002 * 109.47709 * 300.00086 * 1 2 3 31 31 H 1.09001 * 109.47593 * 60.00237 * 1 2 3 32 32 H 1.09005 * 109.46986 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47068 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47169 * 299.99657 * 3 2 1 35 35 H 1.08999 * 109.47288 * 60.00236 * 3 2 1 36 36 H 0.96705 * 113.99943 * 180.02562 * 4 2 1 37 37 H 1.09002 * 109.46937 * 300.00677 * 5 2 1 38 38 H 1.08997 * 109.47179 * 179.97438 * 5 2 1 39 39 H 1.09004 * 110.06904 * 330.56131 * 9 8 6 40 40 H 1.08999 * 110.06829 * 92.08785 * 9 8 6 41 41 H 1.09002 * 110.39531 * 16.03708 * 12 10 9 42 42 H 1.09004 * 110.39250 * 253.75523 * 12 10 9 43 43 H 1.08997 * 109.47145 * 289.99880 * 14 13 12 44 44 H 1.08995 * 109.47293 * 50.00165 * 14 13 12 45 45 H 0.96999 * 120.00344 * 359.97438 * 17 15 14 46 46 H 0.96999 * 120.00438 * 179.97438 * 21 20 18 47 47 H 1.09007 * 110.39552 * 158.48355 * 26 13 12 48 48 H 1.08997 * 110.39800 * 280.75912 * 26 13 12 49 49 H 1.09002 * 110.06977 * 29.44367 * 29 8 6 50 50 H 1.08991 * 110.07176 * 267.91479 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 1.5377 -2.1420 1.2493 7 8 0.8408 -2.5388 0.3395 8 7 1.8628 -2.9718 2.2604 9 6 2.6942 -2.6482 3.4313 10 6 3.4388 -3.9625 3.8258 11 1 4.4837 -3.9871 3.5165 12 6 3.2775 -4.2049 5.3412 13 7 2.9389 -5.6460 5.4608 14 6 2.2857 -5.9285 6.7458 15 6 1.7393 -7.3329 6.7336 16 8 1.8798 -8.0298 5.7509 17 7 1.0936 -7.8142 7.8143 18 6 0.5960 -9.0917 7.8030 19 1 0.7212 -9.7122 6.9280 20 6 -0.0691 -9.5881 8.9174 21 7 -0.5465 -10.8123 8.9064 22 14 -0.2861 -8.5145 10.4307 23 1 -1.5566 -7.7537 10.3198 24 1 -0.3261 -9.3707 11.6433 25 1 0.8518 -7.5659 10.5319 26 6 2.0138 -5.8985 4.3266 27 6 2.6008 -5.0851 3.1542 28 1 3.2022 -5.7034 2.4877 29 6 1.4568 -4.3789 2.4090 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.9703 -0.7122 -1.2326 37 1 1.6766 -0.2073 2.1392 38 1 3.1300 -0.7216 1.2490 39 1 3.4233 -1.8806 3.1717 40 1 2.0656 -2.3049 4.2530 41 1 2.4703 -3.5907 5.7403 42 1 4.2107 -3.9895 5.8617 43 1 3.0120 -5.8282 7.5524 44 1 1.4699 -5.2226 6.9017 45 1 0.9809 -7.2568 8.6001 46 1 -1.0105 -11.1590 9.6844 47 1 1.9953 -6.9603 4.0806 48 1 1.0106 -5.5482 4.5694 49 1 1.3132 -4.8323 1.4282 50 1 0.5368 -4.4434 2.9897 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672412368.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:45 Heat of formation + Delta-G solvation = -126.627769 kcal Electronic energy + Delta-G solvation = -30127.524600 eV Core-core repulsion = 25960.956917 eV Total energy + Delta-G solvation = -4166.567683 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.70865 -40.71217 -39.80639 -38.34008 -36.79640 -35.90090 -33.81177 -33.69129 -32.85471 -31.66612 -29.73934 -28.53994 -28.17234 -26.89536 -26.30581 -24.42431 -22.46800 -21.61879 -21.28476 -20.71564 -20.36722 -19.94721 -18.30599 -17.74119 -17.58858 -17.09062 -16.93127 -16.66965 -16.28093 -16.09919 -15.92023 -15.69912 -15.31666 -15.25392 -14.99034 -14.64007 -14.47116 -14.10807 -14.07023 -13.56509 -13.32816 -13.18579 -13.11678 -13.10232 -13.06100 -12.95945 -12.72098 -12.61870 -12.46886 -12.42152 -12.34193 -11.99321 -11.96432 -11.82128 -11.64409 -11.61767 -11.45837 -11.05611 -10.55438 -10.30426 -10.23234 -9.72792 -9.34439 -8.41881 -6.02925 1.29370 1.34929 1.44185 1.65980 1.94339 1.94720 2.22498 2.68959 3.13293 3.15668 3.31838 3.39532 3.49926 3.66117 3.76793 3.90029 4.03160 4.05242 4.13320 4.20470 4.23743 4.31020 4.35856 4.40441 4.53505 4.56540 4.58621 4.65815 4.73726 4.76156 4.78617 4.83201 4.90914 4.91885 5.02317 5.08985 5.10614 5.17038 5.28425 5.30386 5.36313 5.46830 5.52337 5.84881 5.91258 6.07319 6.57960 6.58676 6.88029 6.98045 7.22209 7.38628 7.96322 8.75728 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024094 B = 0.002029 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.815417 B =13799.906404 C =13889.493463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.138 3.862 3 C -0.169 4.169 4 O -0.574 6.574 5 C -0.154 4.154 6 C 0.521 3.479 7 O -0.568 6.568 8 N -0.621 5.621 9 C 0.107 3.893 10 C -0.088 4.088 11 H 0.117 0.883 12 C 0.038 3.962 13 N -0.510 5.510 14 C 0.044 3.956 15 C 0.446 3.554 16 O -0.607 6.607 17 N -0.590 5.590 18 C -0.327 4.327 19 H 0.054 0.946 20 C -0.017 4.017 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.258 1.258 24 H -0.276 1.276 25 H -0.228 1.228 26 C 0.046 3.954 27 C -0.097 4.097 28 H 0.086 0.914 29 C 0.114 3.886 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.382 0.618 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.125 0.875 44 H 0.081 0.919 45 H 0.390 0.610 46 H 0.279 0.721 47 H 0.067 0.933 48 H 0.032 0.968 49 H 0.058 0.942 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.372 31.921 -7.467 34.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.097 3.903 3 C -0.227 4.227 4 O -0.381 6.381 5 C -0.194 4.194 6 C 0.312 3.688 7 O -0.446 6.446 8 N -0.355 5.355 9 C -0.016 4.016 10 C -0.108 4.108 11 H 0.136 0.864 12 C -0.089 4.089 13 N -0.234 5.234 14 C -0.087 4.087 15 C 0.234 3.766 16 O -0.491 6.491 17 N -0.232 5.232 18 C -0.456 4.456 19 H 0.072 0.928 20 C -0.216 4.216 21 N -0.576 5.576 22 Si 0.785 3.215 23 H -0.183 1.183 24 H -0.201 1.201 25 H -0.151 1.151 26 C -0.082 4.082 27 C -0.117 4.117 28 H 0.105 0.895 29 C -0.010 4.010 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.231 0.769 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.132 0.868 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.126 0.874 43 H 0.143 0.857 44 H 0.098 0.902 45 H 0.225 0.775 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.050 0.950 49 H 0.076 0.924 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.788 30.749 -8.702 33.422 hybrid contribution -0.961 -0.492 0.897 1.404 sum 8.827 30.257 -7.804 32.470 Atomic orbital electron populations 1.22008 0.94184 1.02926 1.02214 1.21044 0.94478 0.91299 0.83446 1.22425 1.02528 0.94251 1.03479 1.86696 1.27229 1.80003 1.44151 1.22516 1.04449 0.90305 1.02132 1.21011 0.79765 0.88467 0.79540 1.90703 1.39599 1.77777 1.36571 1.48745 1.51815 1.11584 1.23358 1.22837 0.93961 0.97304 0.87448 1.23204 1.00403 0.92742 0.94410 0.86449 1.23432 1.02848 0.86890 0.95744 1.65214 1.37815 1.19694 1.00681 1.22079 0.99735 0.91878 0.95056 1.20948 0.81641 0.90755 0.83209 1.90513 1.61926 1.61863 1.34836 1.42026 1.52168 1.13367 1.15668 1.18982 1.34216 0.90143 1.02295 0.92792 1.26148 0.95690 0.97741 1.02011 1.69804 1.37946 1.17470 1.32345 0.85356 0.80554 0.78791 0.76762 1.18274 1.20082 1.15135 1.23185 0.93334 1.00967 0.90759 1.22660 0.96060 0.96815 0.96210 0.89527 1.21946 0.96867 0.82232 0.99985 0.90005 0.92915 0.92708 0.90330 0.92318 0.89894 0.76930 0.85530 0.85572 0.86797 0.89587 0.91779 0.87404 0.85737 0.90159 0.77473 0.91175 0.91444 0.94996 0.92360 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 8.52 71.98 0.61 -2.25 16 2 C 0.14 1.89 0.98 -10.79 -0.01 1.88 16 3 C -0.17 -1.18 8.82 71.98 0.63 -0.55 16 4 O -0.57 -10.88 11.88 -131.51 -1.56 -12.44 16 5 C -0.15 -1.56 3.93 29.85 0.12 -1.44 16 6 C 0.52 10.78 7.44 87.66 0.65 11.43 16 7 O -0.57 -17.71 13.19 14.44 0.19 -17.52 16 8 N -0.62 -11.56 3.32 -810.64 -2.69 -14.25 16 9 C 0.11 1.10 6.43 87.33 0.56 1.66 16 10 C -0.09 -1.28 4.24 -8.46 -0.04 -1.32 16 11 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 12 C 0.04 0.60 6.05 86.43 0.52 1.13 16 13 N -0.51 -14.14 5.33 -886.54 -4.73 -18.87 16 14 C 0.04 1.27 5.55 85.56 0.47 1.74 16 15 C 0.45 19.75 7.50 87.66 0.66 20.41 16 16 O -0.61 -32.97 13.24 -3.07 -0.04 -33.01 16 17 N -0.59 -27.45 5.09 -306.98 -1.56 -29.01 16 18 C -0.33 -19.10 10.16 84.04 0.85 -18.25 16 19 H 0.05 3.77 7.39 -2.91 -0.02 3.75 16 20 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 21 N -0.93 -56.53 13.96 21.66 0.30 -56.22 16 22 Si 0.97 38.34 27.74 68.60 1.90 40.24 16 23 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 24 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.23 -7.49 6.52 99.48 0.65 -6.84 16 26 C 0.05 1.43 4.85 86.43 0.42 1.85 16 27 C -0.10 -2.27 4.03 -9.30 -0.04 -2.30 16 28 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 29 C 0.11 2.75 6.54 86.49 0.57 3.32 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 1.44 5.51 -2.38 -0.01 1.43 16 33 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.38 3.98 9.05 -74.05 -0.67 3.31 16 37 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.13 0.50 7.86 -2.39 -0.02 0.48 16 39 H 0.11 0.39 7.31 -2.39 -0.02 0.37 16 40 H 0.09 0.72 7.19 -2.39 -0.02 0.71 16 41 H 0.06 0.82 6.87 -2.39 -0.02 0.81 16 42 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 43 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 44 H 0.08 1.89 7.88 -2.39 -0.02 1.87 16 45 H 0.39 14.84 5.76 -92.71 -0.53 14.30 16 46 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 47 H 0.07 2.80 6.04 -2.38 -0.01 2.79 16 48 H 0.03 1.02 7.02 -2.39 -0.02 1.00 16 49 H 0.06 1.65 7.92 -2.39 -0.02 1.63 16 50 H 0.06 1.52 7.11 -2.39 -0.02 1.51 16 Total: -1.00 -88.40 387.63 -2.03 -90.43 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: -0.30 Total: 33.84 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 6.46 Total: 16.81 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -8.68 Total: -118.36 kcal Atomic # 8 Polarization: -61.55 SS G_CDS: -1.41 Total: -62.96 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 1.90 Total: 40.24 kcal Total: -88.40 -2.03 -90.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672412368.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.198 kcal (2) G-P(sol) polarization free energy of solvation -88.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds