Wall clock time and date at job start Sat Apr 11 2020 05:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50709 * 109.47191 * 2 1 4 4 C 1.50700 * 120.00309 * 266.56549 * 3 2 1 5 5 C 1.32999 * 119.99573 * 86.56619 * 3 2 1 6 6 C 1.47101 * 119.99866 * 352.46022 * 5 3 2 7 7 O 1.21613 * 120.00559 * 358.10857 * 6 5 3 8 8 N 1.34786 * 119.99771 * 178.10577 * 6 5 3 9 9 C 1.46497 * 120.00045 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47150 * 175.00430 * 9 8 6 11 11 H 1.09004 * 109.54194 * 177.79707 * 10 9 8 12 12 C 1.53101 * 109.50339 * 297.90075 * 10 9 8 13 13 O 1.43012 * 109.25581 * 176.78466 * 12 10 9 14 14 C 1.43014 * 113.74171 * 301.32901 * 13 12 10 15 15 C 1.53093 * 109.25839 * 58.66825 * 14 13 12 16 16 N 1.47008 * 109.26263 * 303.15639 * 15 14 13 17 17 C 1.46903 * 111.00558 * 182.38771 * 16 15 14 18 18 C 1.50693 * 109.47160 * 301.25135 * 17 16 15 19 19 O 1.21300 * 120.00028 * 353.21207 * 18 17 16 20 20 N 1.34774 * 120.00345 * 173.22033 * 18 17 16 21 21 C 1.37098 * 120.00402 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99670 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00034 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00355 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00062 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47171 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47101 * 120.00085 * 25 23 21 28 28 H 1.48491 * 109.47522 * 240.00248 * 25 23 21 29 29 H 1.09003 * 109.47140 * 59.99523 * 1 2 3 30 30 H 1.08996 * 109.47273 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47128 * 299.99806 * 1 2 3 32 32 H 1.08995 * 109.47257 * 240.00637 * 2 1 3 33 33 H 1.08999 * 109.47231 * 119.99964 * 2 1 3 34 34 H 1.09001 * 109.46691 * 270.00172 * 4 3 2 35 35 H 1.09003 * 109.46663 * 29.99851 * 4 3 2 36 36 H 1.08996 * 109.46938 * 149.99730 * 4 3 2 37 37 H 1.07997 * 119.99834 * 172.46528 * 5 3 2 38 38 H 0.96998 * 119.99846 * 0.02562 * 8 6 5 39 39 H 1.09003 * 109.47343 * 54.99809 * 9 8 6 40 40 H 1.09004 * 109.46699 * 295.00411 * 9 8 6 41 41 H 1.09000 * 109.50540 * 296.71573 * 12 10 9 42 42 H 1.09003 * 109.50610 * 56.80788 * 12 10 9 43 43 H 1.08998 * 109.50779 * 178.60878 * 14 13 12 44 44 H 1.09005 * 109.50215 * 298.69359 * 14 13 12 45 45 H 1.09002 * 109.50589 * 63.09034 * 15 14 13 46 46 H 1.08997 * 109.51152 * 183.21315 * 15 14 13 47 47 H 1.09007 * 109.46501 * 61.24675 * 17 16 15 48 48 H 1.08997 * 109.47039 * 181.24503 * 17 16 15 49 49 H 0.97001 * 119.99982 * 359.97438 * 20 18 17 50 50 H 0.96998 * 120.00372 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3573 2.1053 -1.3027 5 6 2.1890 2.0708 1.1498 6 6 1.7180 1.4672 2.4059 7 8 1.1546 0.3895 2.3890 8 7 1.9109 2.1085 3.5756 9 6 1.4424 1.5071 4.8266 10 6 1.8927 2.3698 6.0071 11 1 1.5116 1.9447 6.9357 12 6 3.4224 2.4129 6.0546 13 8 3.8371 3.2803 7.1133 14 6 3.3503 4.6189 6.9851 15 6 1.8200 4.5982 6.9469 16 7 1.3740 3.7357 5.8432 17 6 -0.0911 3.7330 5.7359 18 6 -0.6888 3.2494 7.0319 19 8 0.0311 2.8217 7.9095 20 7 -2.0232 3.2920 7.2160 21 6 -2.5670 2.8516 8.3949 22 1 -1.9261 2.4701 9.1760 23 6 -3.9427 2.8961 8.5848 24 7 -4.7227 3.3598 7.6343 25 14 -4.6838 2.2953 10.1909 26 1 -3.6001 1.8250 11.0907 27 1 -5.4202 3.4079 10.8430 28 1 -5.6201 1.1761 9.9160 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.4028 1.9283 -1.5552 35 1 1.7202 1.7057 -2.0918 36 1 2.1838 3.1768 -1.2033 37 1 2.6618 3.0416 1.1612 38 1 2.3599 2.9681 3.5890 39 1 1.8611 0.5058 4.9276 40 1 0.3541 1.4463 4.8152 41 1 3.8093 1.4096 6.2334 42 1 3.8056 2.7871 5.1053 43 1 3.6853 5.2111 7.8366 44 1 3.7322 5.0582 6.0634 45 1 1.4376 4.2088 7.8905 46 1 1.4460 5.6102 6.7920 47 1 -0.4419 4.7441 5.5288 48 1 -0.3948 3.0699 4.9259 49 1 -2.5989 3.6343 6.5144 50 1 -5.6831 3.3905 7.7667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673038832.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:56 Heat of formation + Delta-G solvation = -91.123621 kcal Electronic energy + Delta-G solvation = -30895.873217 eV Core-core repulsion = 26730.845109 eV Total energy + Delta-G solvation = -4165.028108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.35523 -39.51765 -37.97062 -36.41416 -35.42979 -34.37865 -33.66315 -31.56583 -31.38945 -30.67524 -29.03079 -28.32738 -26.29601 -25.42875 -23.75642 -23.71713 -22.48704 -21.23079 -19.98615 -19.17952 -18.72940 -17.87853 -17.06433 -16.49917 -16.19654 -16.08382 -15.55813 -15.24748 -14.93727 -14.72877 -14.62653 -14.46298 -14.09077 -14.03619 -13.83040 -13.72562 -13.54268 -13.17230 -12.96330 -12.82677 -12.53936 -12.41445 -12.01611 -11.98421 -11.88440 -11.57440 -11.56384 -11.24756 -11.13911 -10.93289 -10.80830 -10.68319 -10.42567 -10.38592 -10.28338 -9.56208 -9.54492 -9.42312 -9.30048 -9.23912 -8.71718 -8.05950 -7.57398 -6.50803 -3.92286 1.30649 3.09508 3.21989 3.28747 3.33775 3.40540 3.74746 3.96829 4.10099 4.11764 4.61230 4.67361 4.88055 4.96355 5.00666 5.09407 5.15392 5.20980 5.24007 5.29728 5.33130 5.35630 5.47951 5.52142 5.53078 5.58558 5.62080 5.70595 5.79174 5.84847 5.86391 5.90863 6.01281 6.09315 6.12650 6.14049 6.30131 6.33544 6.42870 6.53295 6.56807 6.68472 7.12804 7.17413 7.30090 7.46553 7.71999 7.95067 8.40829 8.48700 9.07236 9.42421 9.92072 10.65628 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.003191 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.957830 B = 8771.748612 C =10800.477323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 C -0.033 4.033 4 C -0.126 4.126 5 C -0.230 4.230 6 C 0.538 3.462 7 O -0.540 6.540 8 N -0.714 5.714 9 C 0.130 3.870 10 C 0.016 3.984 11 H 0.111 0.889 12 C 0.076 3.924 13 O -0.383 6.383 14 C 0.069 3.931 15 C -0.001 4.001 16 N -0.506 5.506 17 C 0.036 3.964 18 C 0.404 3.596 19 O -0.593 6.593 20 N -0.552 5.552 21 C -0.303 4.303 22 H 0.104 0.896 23 C 0.025 3.975 24 N -0.896 5.896 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.280 1.280 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.405 0.595 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.050 0.950 43 H 0.092 0.908 44 H 0.049 0.951 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.393 0.607 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.321 1.346 -14.994 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.137 4.137 3 C -0.035 4.035 4 C -0.183 4.183 5 C -0.250 4.250 6 C 0.328 3.672 7 O -0.421 6.421 8 N -0.366 5.366 9 C 0.006 3.994 10 C -0.093 4.093 11 H 0.128 0.872 12 C -0.001 4.001 13 O -0.301 6.301 14 C -0.008 4.008 15 C -0.129 4.129 16 N -0.230 5.230 17 C -0.095 4.095 18 C 0.190 3.810 19 O -0.481 6.481 20 N -0.187 5.187 21 C -0.432 4.432 22 H 0.122 0.878 23 C -0.178 4.178 24 N -0.537 5.537 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.206 1.206 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.141 0.859 38 H 0.240 0.760 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.110 0.890 44 H 0.068 0.932 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.107 0.893 48 H 0.111 0.889 49 H 0.226 0.774 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.486 0.464 -14.676 20.626 hybrid contribution -1.283 0.360 0.861 1.586 sum 13.203 0.825 -13.816 19.128 Atomic orbital electron populations 1.21560 0.94141 1.01700 1.01588 1.20931 0.97200 0.92448 1.03083 1.22561 0.90810 0.95779 0.94302 1.20990 1.02225 1.00464 0.94602 1.22378 1.07950 1.02283 0.92437 1.18565 0.79634 0.84884 0.84110 1.90741 1.42840 1.21448 1.87038 1.45889 1.60441 1.24216 1.06019 1.21356 1.00071 0.96101 0.81872 1.22905 0.95891 0.90519 0.99942 0.87182 1.22596 0.92675 0.94583 0.90272 1.87975 1.73438 1.20887 1.47807 1.22616 0.93124 0.83784 1.01303 1.23025 0.95637 0.97606 0.96652 1.62713 1.08344 1.09202 1.42788 1.22114 0.87852 1.02688 0.96890 1.20966 0.83461 0.86228 0.90358 1.90415 1.59439 1.52695 1.45506 1.42058 1.05460 1.54354 1.16841 1.19763 0.90824 1.38653 0.94004 0.87843 1.25303 0.96154 0.97123 0.99174 1.69615 1.05301 1.45616 1.33133 0.85803 0.79016 0.78342 0.81221 1.19191 1.20663 1.20620 0.94021 0.92837 0.91314 0.92562 0.88141 0.90638 0.90995 0.91142 0.85879 0.75966 0.90912 0.91088 0.88925 0.93223 0.88971 0.93226 0.89409 0.90621 0.89290 0.88904 0.77388 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.35 37.16 0.35 -1.18 16 2 C -0.10 -1.07 5.33 -27.88 -0.15 -1.22 16 3 C -0.03 -0.31 5.36 -101.16 -0.54 -0.85 16 4 C -0.13 -0.83 10.02 36.01 0.36 -0.47 16 5 C -0.23 -2.34 9.62 -37.80 -0.36 -2.71 16 6 C 0.54 7.00 7.61 -12.66 -0.10 6.91 16 7 O -0.54 -8.58 11.21 5.27 0.06 -8.52 16 8 N -0.71 -8.63 5.04 -61.49 -0.31 -8.94 16 9 C 0.13 1.86 4.80 -4.05 -0.02 1.84 16 10 C 0.02 0.25 1.91 -67.60 -0.13 0.12 16 11 H 0.11 2.14 5.60 -51.93 -0.29 1.85 16 12 C 0.08 1.01 6.18 37.21 0.23 1.24 16 13 O -0.38 -5.79 10.83 -35.23 -0.38 -6.17 16 14 C 0.07 0.90 7.01 37.21 0.26 1.16 16 15 C 0.00 -0.02 5.24 -3.72 -0.02 -0.04 16 16 N -0.51 -7.52 4.26 -227.78 -0.97 -8.49 16 17 C 0.04 0.60 5.56 -4.98 -0.03 0.58 16 18 C 0.40 8.91 7.14 -10.99 -0.08 8.83 16 19 O -0.59 -14.66 11.18 5.54 0.06 -14.60 16 20 N -0.55 -13.53 5.29 -10.97 -0.06 -13.58 16 21 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 24 N -0.90 -24.03 13.05 55.50 0.72 -23.31 16 25 Si 0.93 20.82 29.55 -169.99 -5.02 15.79 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.96 6.44 -51.93 -0.33 0.63 16 32 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 33 H 0.10 1.30 5.87 -51.93 -0.30 1.00 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 36 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.40 4.30 7.30 -40.82 -0.30 4.00 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.18 6.40 -51.93 -0.33 0.85 16 41 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.05 0.57 7.03 -51.93 -0.36 0.20 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 1.72 5.56 -51.93 -0.29 1.43 16 46 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.09 1.37 8.14 -51.92 -0.42 0.94 16 48 H 0.09 1.51 6.05 -51.93 -0.31 1.20 16 49 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 50 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -30.60 391.29 -8.32 -38.92 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -7.85 Total: 16.62 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -0.47 Total: 6.39 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.61 Total: -54.33 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.26 Total: -29.29 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.60 -8.32 -38.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673038832.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.206 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds