Wall clock time and date at job start Sat Apr 11 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50709 * 109.47191 * 2 1 4 4 C 1.50700 * 120.00309 * 266.56549 * 3 2 1 5 5 C 1.32999 * 119.99573 * 86.56619 * 3 2 1 6 6 C 1.47101 * 119.99866 * 352.46022 * 5 3 2 7 7 O 1.21613 * 120.00559 * 358.10857 * 6 5 3 8 8 N 1.34786 * 119.99771 * 178.10577 * 6 5 3 9 9 C 1.46497 * 120.00045 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47150 * 175.00430 * 9 8 6 11 11 H 1.09004 * 109.54194 * 177.79707 * 10 9 8 12 12 C 1.53101 * 109.50339 * 297.90075 * 10 9 8 13 13 O 1.43012 * 109.25581 * 176.78466 * 12 10 9 14 14 C 1.43014 * 113.74171 * 301.32901 * 13 12 10 15 15 C 1.53093 * 109.25839 * 58.66825 * 14 13 12 16 16 N 1.47008 * 109.26263 * 303.15639 * 15 14 13 17 17 C 1.46903 * 111.00558 * 182.38771 * 16 15 14 18 18 C 1.50693 * 109.47160 * 301.25135 * 17 16 15 19 19 O 1.21300 * 120.00028 * 353.21207 * 18 17 16 20 20 N 1.34774 * 120.00345 * 173.22033 * 18 17 16 21 21 C 1.37098 * 120.00402 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99670 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00034 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00355 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00062 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47171 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47101 * 120.00085 * 25 23 21 28 28 H 1.48491 * 109.47522 * 240.00248 * 25 23 21 29 29 H 1.09003 * 109.47140 * 59.99523 * 1 2 3 30 30 H 1.08996 * 109.47273 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47128 * 299.99806 * 1 2 3 32 32 H 1.08995 * 109.47257 * 240.00637 * 2 1 3 33 33 H 1.08999 * 109.47231 * 119.99964 * 2 1 3 34 34 H 1.09001 * 109.46691 * 270.00172 * 4 3 2 35 35 H 1.09003 * 109.46663 * 29.99851 * 4 3 2 36 36 H 1.08996 * 109.46938 * 149.99730 * 4 3 2 37 37 H 1.07997 * 119.99834 * 172.46528 * 5 3 2 38 38 H 0.96998 * 119.99846 * 0.02562 * 8 6 5 39 39 H 1.09003 * 109.47343 * 54.99809 * 9 8 6 40 40 H 1.09004 * 109.46699 * 295.00411 * 9 8 6 41 41 H 1.09000 * 109.50540 * 296.71573 * 12 10 9 42 42 H 1.09003 * 109.50610 * 56.80788 * 12 10 9 43 43 H 1.08998 * 109.50779 * 178.60878 * 14 13 12 44 44 H 1.09005 * 109.50215 * 298.69359 * 14 13 12 45 45 H 1.09002 * 109.50589 * 63.09034 * 15 14 13 46 46 H 1.08997 * 109.51152 * 183.21315 * 15 14 13 47 47 H 1.09007 * 109.46501 * 61.24675 * 17 16 15 48 48 H 1.08997 * 109.47039 * 181.24503 * 17 16 15 49 49 H 0.97001 * 119.99982 * 359.97438 * 20 18 17 50 50 H 0.96998 * 120.00372 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3573 2.1053 -1.3027 5 6 2.1890 2.0708 1.1498 6 6 1.7180 1.4672 2.4059 7 8 1.1546 0.3895 2.3890 8 7 1.9109 2.1085 3.5756 9 6 1.4424 1.5071 4.8266 10 6 1.8927 2.3698 6.0071 11 1 1.5116 1.9447 6.9357 12 6 3.4224 2.4129 6.0546 13 8 3.8371 3.2803 7.1133 14 6 3.3503 4.6189 6.9851 15 6 1.8200 4.5982 6.9469 16 7 1.3740 3.7357 5.8432 17 6 -0.0911 3.7330 5.7359 18 6 -0.6888 3.2494 7.0319 19 8 0.0311 2.8217 7.9095 20 7 -2.0232 3.2920 7.2160 21 6 -2.5670 2.8516 8.3949 22 1 -1.9261 2.4701 9.1760 23 6 -3.9427 2.8961 8.5848 24 7 -4.7227 3.3598 7.6343 25 14 -4.6838 2.2953 10.1909 26 1 -3.6001 1.8250 11.0907 27 1 -5.4202 3.4079 10.8430 28 1 -5.6201 1.1761 9.9160 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.4028 1.9283 -1.5552 35 1 1.7202 1.7057 -2.0918 36 1 2.1838 3.1768 -1.2033 37 1 2.6618 3.0416 1.1612 38 1 2.3599 2.9681 3.5890 39 1 1.8611 0.5058 4.9276 40 1 0.3541 1.4463 4.8152 41 1 3.8093 1.4096 6.2334 42 1 3.8056 2.7871 5.1053 43 1 3.6853 5.2111 7.8366 44 1 3.7322 5.0582 6.0634 45 1 1.4376 4.2088 7.8905 46 1 1.4460 5.6102 6.7920 47 1 -0.4419 4.7441 5.5288 48 1 -0.3948 3.0699 4.9259 49 1 -2.5989 3.6343 6.5144 50 1 -5.6831 3.3905 7.7667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673038832.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:55 Heat of formation + Delta-G solvation = -114.279647 kcal Electronic energy + Delta-G solvation = -30896.877337 eV Core-core repulsion = 26730.845109 eV Total energy + Delta-G solvation = -4166.032228 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.64191 -40.65728 -39.54551 -37.38978 -36.65854 -35.94131 -35.15565 -33.37495 -32.62757 -31.56230 -30.39088 -29.13630 -27.52807 -26.97043 -25.26611 -24.61996 -23.63171 -22.26673 -21.48810 -20.72767 -19.89078 -19.54547 -18.02669 -17.82165 -17.68323 -17.38975 -16.65302 -16.58083 -16.31253 -15.94036 -15.81599 -15.77264 -15.58802 -15.47460 -15.16853 -14.86408 -14.62432 -14.36184 -13.94011 -13.64417 -13.61651 -13.54608 -13.33219 -13.15754 -13.06738 -12.98918 -12.80491 -12.79350 -12.47367 -12.28546 -12.17246 -11.97275 -11.93003 -11.70149 -11.51472 -11.39503 -11.08232 -10.61399 -10.45965 -10.10728 -10.04019 -9.71542 -9.14651 -8.51244 -6.01021 0.50041 1.30683 1.37181 1.50716 1.94444 2.24734 2.33171 2.43670 2.77391 2.95093 3.14706 3.19269 3.73658 3.80588 3.89027 3.94288 4.01855 4.23600 4.29431 4.30564 4.33248 4.46495 4.49258 4.53973 4.58163 4.58911 4.61722 4.67498 4.70731 4.74144 4.78278 4.89387 4.92658 5.02915 5.05609 5.14479 5.22818 5.28643 5.36835 5.40912 5.54666 5.63016 5.75835 5.77147 5.88397 5.95769 6.21363 6.52316 6.76110 7.06504 7.42715 7.48896 8.03266 8.64583 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.003191 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.957830 B = 8771.748612 C =10800.477323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.102 4.102 3 C -0.026 4.026 4 C -0.123 4.123 5 C -0.240 4.240 6 C 0.531 3.469 7 O -0.576 6.576 8 N -0.702 5.702 9 C 0.143 3.857 10 C 0.023 3.977 11 H 0.063 0.937 12 C 0.080 3.920 13 O -0.404 6.404 14 C 0.071 3.929 15 C -0.002 4.002 16 N -0.483 5.483 17 C 0.048 3.952 18 C 0.408 3.592 19 O -0.619 6.619 20 N -0.568 5.568 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.917 5.917 25 Si 0.990 3.010 26 H -0.275 1.275 27 H -0.269 1.269 28 H -0.272 1.272 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.153 0.847 38 H 0.415 0.585 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.080 0.920 45 H 0.040 0.960 46 H 0.093 0.907 47 H 0.113 0.887 48 H 0.101 0.899 49 H 0.395 0.605 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.820 2.814 -17.256 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.139 4.139 3 C -0.028 4.028 4 C -0.179 4.179 5 C -0.260 4.260 6 C 0.323 3.677 7 O -0.459 6.459 8 N -0.354 5.354 9 C 0.018 3.982 10 C -0.086 4.086 11 H 0.081 0.919 12 C 0.003 3.997 13 O -0.322 6.322 14 C -0.005 4.005 15 C -0.130 4.130 16 N -0.207 5.207 17 C -0.084 4.084 18 C 0.195 3.805 19 O -0.507 6.507 20 N -0.204 5.204 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.558 5.558 25 Si 0.814 3.186 26 H -0.199 1.199 27 H -0.194 1.194 28 H -0.197 1.197 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.170 0.830 38 H 0.253 0.747 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.118 0.882 42 H 0.096 0.904 43 H 0.124 0.876 44 H 0.098 0.902 45 H 0.059 0.941 46 H 0.112 0.888 47 H 0.131 0.869 48 H 0.119 0.881 49 H 0.228 0.772 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.011 1.962 -16.955 23.402 hybrid contribution -1.674 -0.145 1.525 2.269 sum 14.337 1.817 -15.430 21.141 Atomic orbital electron populations 1.21502 0.94923 1.01346 1.00896 1.20893 0.96528 0.93701 1.02791 1.22837 0.89334 0.94960 0.95698 1.21046 1.03360 1.00800 0.92717 1.22445 1.09115 1.03571 0.90901 1.19161 0.79031 0.84463 0.85057 1.90744 1.44434 1.23132 1.87550 1.45714 1.60249 1.24478 1.04990 1.21016 0.98287 0.96087 0.82821 1.22737 0.97587 0.90258 0.98014 0.91878 1.22660 0.90658 0.95194 0.91193 1.87957 1.73483 1.21987 1.48806 1.22754 0.90971 0.83264 1.03556 1.23044 0.97729 0.98027 0.94205 1.62811 1.06733 1.08982 1.42140 1.22142 0.88710 1.03817 0.93739 1.22020 0.82594 0.84213 0.91671 1.90435 1.59980 1.53128 1.47189 1.42132 1.06352 1.55571 1.16383 1.19656 0.91330 1.40398 0.94792 0.90470 1.26029 0.95997 0.96937 1.02197 1.69672 1.05677 1.46054 1.34413 0.84909 0.77968 0.78260 0.77442 1.19931 1.19408 1.19705 0.92224 0.93151 0.94270 0.90458 0.90806 0.88936 0.90231 0.89940 0.82981 0.74690 0.91249 0.93900 0.88231 0.90392 0.87556 0.90154 0.94123 0.88827 0.86878 0.88089 0.77151 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.35 71.98 0.67 -2.26 16 2 C -0.10 -2.08 5.33 29.85 0.16 -1.92 16 3 C -0.03 -0.44 5.36 -17.61 -0.09 -0.53 16 4 C -0.12 -1.15 10.02 71.24 0.71 -0.44 16 5 C -0.24 -4.33 9.62 23.43 0.23 -4.11 16 6 C 0.53 13.45 7.61 86.57 0.66 14.10 16 7 O -0.58 -18.74 11.21 -4.07 -0.05 -18.79 16 8 N -0.70 -16.18 5.04 -466.71 -2.35 -18.53 16 9 C 0.14 4.16 4.80 86.38 0.41 4.58 16 10 C 0.02 0.71 1.91 44.93 0.09 0.80 16 11 H 0.06 2.60 5.60 -2.38 -0.01 2.58 16 12 C 0.08 2.01 6.18 72.02 0.45 2.45 16 13 O -0.40 -11.64 10.83 -148.98 -1.61 -13.25 16 14 C 0.07 1.69 7.01 72.01 0.50 2.20 16 15 C 0.00 -0.06 5.24 86.31 0.45 0.39 16 16 N -0.48 -13.94 4.26 -874.56 -3.72 -17.66 16 17 C 0.05 1.58 5.56 85.55 0.48 2.06 16 18 C 0.41 18.65 7.14 87.66 0.63 19.28 16 19 O -0.62 -32.28 11.18 -3.09 -0.03 -32.31 16 20 N -0.57 -28.90 5.29 -306.99 -1.62 -30.52 16 21 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 22 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 23 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 24 N -0.92 -49.72 13.05 21.66 0.28 -49.44 16 25 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 26 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.04 1.11 6.44 -2.39 -0.02 1.10 16 32 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 33 H 0.07 1.94 5.87 -2.39 -0.01 1.92 16 34 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 36 H 0.08 0.62 8.07 -2.39 -0.02 0.60 16 37 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 38 H 0.42 7.72 7.30 -92.71 -0.68 7.04 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.04 1.49 6.40 -2.38 -0.02 1.48 16 41 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.08 1.54 7.03 -2.39 -0.02 1.52 16 43 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 45 H 0.04 1.63 5.56 -2.39 -0.01 1.62 16 46 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 47 H 0.11 3.29 8.14 -2.38 -0.02 3.27 16 48 H 0.10 3.28 6.05 -2.39 -0.01 3.27 16 49 H 0.39 19.34 7.90 -92.71 -0.73 18.61 16 50 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -70.61 391.29 -0.89 -71.51 By element: Atomic # 1 Polarization: 45.59 SS G_CDS: -0.44 Total: 45.15 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 6.62 Total: 18.47 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -7.41 Total: -116.15 kcal Atomic # 8 Polarization: -62.65 SS G_CDS: -1.69 Total: -64.35 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -70.61 -0.89 -71.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673038832.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.771 kcal (2) G-P(sol) polarization free energy of solvation -70.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds