Wall clock time and date at job start Sat Apr 11 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47146 * 2 1 4 4 C 1.50703 * 120.00072 * 274.99900 * 3 2 1 5 5 C 1.32994 * 120.00475 * 95.00210 * 3 2 1 6 6 C 1.47093 * 120.00400 * 172.71193 * 5 3 2 7 7 O 1.21622 * 120.00129 * 354.09146 * 6 5 3 8 8 N 1.34777 * 120.00189 * 174.08387 * 6 5 3 9 9 C 1.46498 * 120.00291 * 179.72580 * 8 6 5 10 10 C 1.52999 * 109.47461 * 175.39758 * 9 8 6 11 11 H 1.09005 * 109.50912 * 182.55658 * 10 9 8 12 12 C 1.53098 * 109.50931 * 62.46576 * 10 9 8 13 13 O 1.43008 * 109.25763 * 183.21852 * 12 10 9 14 14 C 1.43015 * 113.73880 * 58.67439 * 13 12 10 15 15 C 1.53097 * 109.25706 * 301.32300 * 14 13 12 16 16 N 1.47018 * 109.50090 * 302.68446 * 10 9 8 17 17 C 1.46894 * 111.00041 * 302.32367 * 16 10 9 18 18 C 1.50700 * 109.47052 * 162.67285 * 17 16 10 19 19 O 1.21298 * 120.00217 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00265 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99922 * 179.97438 * 20 18 17 22 22 H 1.07991 * 120.00162 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99502 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00387 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99730 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47147 * 60.00413 * 25 23 21 27 27 H 1.48498 * 109.47188 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47160 * 300.00644 * 25 23 21 29 29 H 1.09008 * 109.47220 * 300.00260 * 1 2 3 30 30 H 1.08999 * 109.47478 * 59.99706 * 1 2 3 31 31 H 1.08995 * 109.47382 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46834 * 239.99972 * 2 1 3 33 33 H 1.09001 * 109.47050 * 119.99659 * 2 1 3 34 34 H 1.08997 * 109.47512 * 264.79027 * 4 3 2 35 35 H 1.09008 * 109.47086 * 24.78744 * 4 3 2 36 36 H 1.08997 * 109.47345 * 144.78562 * 4 3 2 37 37 H 1.08006 * 119.99342 * 352.70926 * 5 3 2 38 38 H 0.97001 * 119.99792 * 0.02562 * 8 6 5 39 39 H 1.09007 * 109.47277 * 295.39752 * 9 8 6 40 40 H 1.09002 * 109.47162 * 55.39154 * 9 8 6 41 41 H 1.08999 * 109.50567 * 303.15888 * 12 10 9 42 42 H 1.09001 * 109.50513 * 63.28310 * 12 10 9 43 43 H 1.08994 * 109.51241 * 61.26176 * 14 13 12 44 44 H 1.09002 * 109.50849 * 181.34927 * 14 13 12 45 45 H 1.09003 * 109.50903 * 176.78326 * 15 14 13 46 46 H 1.09001 * 109.50764 * 296.87540 * 15 14 13 47 47 H 1.09004 * 109.47730 * 282.67410 * 17 16 10 48 48 H 1.09006 * 109.47274 * 42.67552 * 17 16 10 49 49 H 0.96998 * 120.00015 * 0.02562 * 20 18 17 50 50 H 0.96999 * 119.99937 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1763 2.1691 -1.3002 5 6 2.3487 2.0143 1.1473 6 6 2.9882 3.3389 1.1383 7 8 3.3255 3.8443 0.0847 8 7 3.2003 3.9927 2.2977 9 6 3.8427 5.3093 2.2892 10 6 3.8600 5.8776 3.7097 11 1 4.2968 6.8762 3.6970 12 6 4.6935 4.9665 4.6147 13 8 4.6444 5.4610 5.9557 14 6 3.3207 5.5426 6.4911 15 6 2.4733 6.4595 5.6051 16 7 2.4855 5.9485 4.2266 17 6 1.6363 6.7694 3.3533 18 6 0.1866 6.4852 3.6509 19 8 -0.1100 5.6784 4.5067 20 7 -0.7804 7.1282 2.9668 21 6 -2.0993 6.8691 3.2373 22 1 -2.3633 6.1503 3.9986 23 6 -3.0962 7.5325 2.5323 24 7 -2.7750 8.4076 1.6062 25 14 -4.8932 7.1801 2.9012 26 1 -5.1803 7.5064 4.3212 27 1 -5.7518 8.0104 2.0188 28 1 -5.1762 5.7430 2.6566 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2029 2.0846 -1.6564 35 1 1.4986 1.7444 -2.0408 36 1 1.9313 3.2196 -1.1438 37 1 2.1359 1.5237 2.0857 38 1 2.9316 3.5896 3.1380 39 1 4.8653 5.2124 1.9242 40 1 3.2860 5.9811 1.6358 41 1 4.2889 3.9549 4.5847 42 1 5.7270 4.9562 4.2682 43 1 2.8761 4.5478 6.5157 44 1 3.3613 5.9482 7.5020 45 1 1.4487 6.4795 5.9767 46 1 2.8870 7.4678 5.6239 47 1 1.8438 7.8245 3.5320 48 1 1.8472 6.5292 2.3112 49 1 -0.5433 7.7736 2.2827 50 1 -3.4709 8.8709 1.1144 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673038835.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:07 Heat of formation + Delta-G solvation = -95.292294 kcal Electronic energy + Delta-G solvation = -30833.174582 eV Core-core repulsion = 26667.965707 eV Total energy + Delta-G solvation = -4165.208875 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.27932 -39.33596 -37.98968 -36.48240 -35.69626 -34.38954 -33.72556 -31.51464 -31.24827 -30.86543 -29.07247 -27.97488 -26.37009 -25.54437 -24.12866 -23.79363 -22.54951 -21.13014 -19.84982 -19.17363 -18.67991 -17.88352 -16.99970 -16.70177 -16.30985 -15.85078 -15.65705 -15.26784 -14.96718 -14.77790 -14.67423 -14.45535 -14.27431 -14.11312 -13.73066 -13.63691 -13.45281 -13.32052 -13.10628 -12.65994 -12.57867 -12.25388 -12.16801 -11.99166 -11.73835 -11.58382 -11.53218 -11.45877 -11.34869 -11.13136 -11.01030 -10.83628 -10.50711 -10.45551 -10.22477 -9.68803 -9.48541 -9.46339 -9.16820 -8.72967 -8.54004 -8.02862 -7.95240 -6.41920 -3.82953 1.43867 3.18717 3.24791 3.27834 3.31531 3.48764 3.72822 3.84608 3.90054 4.19960 4.62598 4.65896 4.70898 4.77237 4.97569 5.02163 5.12863 5.16545 5.19321 5.22539 5.27273 5.30747 5.39678 5.46516 5.51599 5.60460 5.61792 5.65833 5.74774 5.75902 5.77438 5.80319 5.86266 5.94303 6.03783 6.10750 6.11475 6.13530 6.25058 6.51799 6.56949 6.63540 7.03961 7.06821 7.19317 7.54013 7.73168 8.04865 8.43055 8.60778 9.17251 9.53777 10.05172 10.75717 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006415 B = 0.004425 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4363.766304 B = 6325.932492 C = 9473.214782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.031 4.031 4 C -0.123 4.123 5 C -0.228 4.228 6 C 0.546 3.454 7 O -0.549 6.549 8 N -0.712 5.712 9 C 0.128 3.872 10 C 0.031 3.969 11 H 0.064 0.936 12 C 0.073 3.927 13 O -0.387 6.387 14 C 0.065 3.935 15 C 0.022 3.978 16 N -0.504 5.504 17 C 0.039 3.961 18 C 0.446 3.554 19 O -0.578 6.578 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.408 0.592 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.035 0.965 47 H 0.050 0.950 48 H 0.092 0.908 49 H 0.391 0.609 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.663 -10.322 0.139 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.033 4.033 4 C -0.179 4.179 5 C -0.249 4.249 6 C 0.336 3.664 7 O -0.430 6.430 8 N -0.364 5.364 9 C 0.003 3.997 10 C -0.078 4.078 11 H 0.081 0.919 12 C -0.004 4.004 13 O -0.306 6.306 14 C -0.012 4.012 15 C -0.106 4.106 16 N -0.230 5.230 17 C -0.092 4.092 18 C 0.231 3.769 19 O -0.462 6.462 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.143 0.857 38 H 0.244 0.756 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.114 0.886 45 H 0.123 0.877 46 H 0.053 0.947 47 H 0.068 0.932 48 H 0.110 0.890 49 H 0.224 0.776 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.545 -10.780 -0.016 17.311 hybrid contribution -0.968 1.005 -0.008 1.395 sum 12.577 -9.775 -0.025 15.929 Atomic orbital electron populations 1.21741 0.94105 1.01933 1.02914 1.20751 0.96815 0.92668 1.03002 1.22511 0.90503 0.94785 0.95514 1.21126 1.01852 1.01583 0.93305 1.22347 1.07188 0.96429 0.98895 1.18526 0.78897 0.85563 0.83413 1.90739 1.52365 1.69308 1.30542 1.45738 1.61883 1.19232 1.09522 1.21330 0.98033 0.84997 0.95291 1.22653 0.90902 0.99678 0.94590 0.91850 1.22626 0.99691 0.96325 0.81784 1.87956 1.28090 1.86316 1.28226 1.22698 0.81964 0.99893 0.96614 1.22848 1.02870 0.96010 0.88844 1.61780 1.06803 1.52600 1.01814 1.21992 0.93817 0.95343 0.98025 1.19641 0.85962 0.85461 0.85787 1.90492 1.82985 1.37368 1.35394 1.41852 1.05643 1.37869 1.34653 1.19614 0.80755 1.22747 1.19720 0.88029 1.25250 1.00490 0.96145 0.95969 1.69602 1.34562 1.26504 1.23557 0.85939 0.81661 0.78435 0.78298 1.19938 1.20970 1.19920 0.92010 0.92269 0.92251 0.90571 0.90818 0.90612 0.92856 0.89077 0.85741 0.75604 0.91029 0.90652 0.92351 0.88521 0.91959 0.88612 0.87671 0.94671 0.93209 0.88964 0.77578 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.89 37.16 0.37 -1.04 16 2 C -0.10 -0.87 6.08 -27.89 -0.17 -1.04 16 3 C -0.03 -0.37 5.36 -101.17 -0.54 -0.91 16 4 C -0.12 -1.53 8.48 36.01 0.31 -1.23 16 5 C -0.23 -2.90 9.60 -37.81 -0.36 -3.26 16 6 C 0.55 8.03 7.61 -12.67 -0.10 7.93 16 7 O -0.55 -9.38 13.28 5.26 0.07 -9.31 16 8 N -0.71 -9.36 5.13 -61.49 -0.32 -9.68 16 9 C 0.13 1.58 4.85 -4.04 -0.02 1.56 16 10 C 0.03 0.38 2.25 -67.60 -0.15 0.23 16 11 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 12 C 0.07 0.80 6.18 37.21 0.23 1.03 16 13 O -0.39 -4.94 10.83 -35.23 -0.38 -5.32 16 14 C 0.07 0.82 7.01 37.21 0.26 1.08 16 15 C 0.02 0.33 5.31 -3.71 -0.02 0.31 16 16 N -0.50 -7.65 3.76 -227.76 -0.86 -8.51 16 17 C 0.04 0.68 5.32 -4.98 -0.03 0.66 16 18 C 0.45 10.24 7.51 -10.99 -0.08 10.16 16 19 O -0.58 -14.87 14.55 5.54 0.08 -14.79 16 20 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 21 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 22 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 25 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 29 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.60 8.03 -51.93 -0.42 0.18 16 34 H 0.08 0.93 8.05 -51.93 -0.42 0.52 16 35 H 0.05 0.57 8.09 -51.92 -0.42 0.15 16 36 H 0.09 1.40 6.12 -51.93 -0.32 1.08 16 37 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 38 H 0.41 5.17 7.14 -40.82 -0.29 4.88 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.06 6.17 -51.93 -0.32 0.73 16 41 H 0.06 0.63 6.85 -51.93 -0.36 0.27 16 42 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.11 1.85 6.55 -51.93 -0.34 1.51 16 46 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.05 0.81 8.03 -51.93 -0.42 0.39 16 48 H 0.09 1.56 5.54 -51.93 -0.29 1.27 16 49 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 50 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 LS Contribution 400.79 15.07 6.04 6.04 Total: -1.00 -31.84 400.79 -8.34 -40.18 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: -8.07 Total: 15.89 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -0.55 Total: 7.60 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.51 Total: -56.27 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.23 Total: -29.42 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.84 -8.34 -40.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673038835.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.117 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds