Wall clock time and date at job start Sat Apr 11 2020 05:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47146 * 2 1 4 4 C 1.50703 * 120.00072 * 274.99900 * 3 2 1 5 5 C 1.32994 * 120.00475 * 95.00210 * 3 2 1 6 6 C 1.47093 * 120.00400 * 172.71193 * 5 3 2 7 7 O 1.21622 * 120.00129 * 354.09146 * 6 5 3 8 8 N 1.34777 * 120.00189 * 174.08387 * 6 5 3 9 9 C 1.46498 * 120.00291 * 179.72580 * 8 6 5 10 10 C 1.52999 * 109.47461 * 175.39758 * 9 8 6 11 11 H 1.09005 * 109.50912 * 182.55658 * 10 9 8 12 12 C 1.53098 * 109.50931 * 62.46576 * 10 9 8 13 13 O 1.43008 * 109.25763 * 183.21852 * 12 10 9 14 14 C 1.43015 * 113.73880 * 58.67439 * 13 12 10 15 15 C 1.53097 * 109.25706 * 301.32300 * 14 13 12 16 16 N 1.47018 * 109.50090 * 302.68446 * 10 9 8 17 17 C 1.46894 * 111.00041 * 302.32367 * 16 10 9 18 18 C 1.50700 * 109.47052 * 162.67285 * 17 16 10 19 19 O 1.21298 * 120.00217 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00265 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99922 * 179.97438 * 20 18 17 22 22 H 1.07991 * 120.00162 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99502 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00387 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99730 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47147 * 60.00413 * 25 23 21 27 27 H 1.48498 * 109.47188 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47160 * 300.00644 * 25 23 21 29 29 H 1.09008 * 109.47220 * 300.00260 * 1 2 3 30 30 H 1.08999 * 109.47478 * 59.99706 * 1 2 3 31 31 H 1.08995 * 109.47382 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46834 * 239.99972 * 2 1 3 33 33 H 1.09001 * 109.47050 * 119.99659 * 2 1 3 34 34 H 1.08997 * 109.47512 * 264.79027 * 4 3 2 35 35 H 1.09008 * 109.47086 * 24.78744 * 4 3 2 36 36 H 1.08997 * 109.47345 * 144.78562 * 4 3 2 37 37 H 1.08006 * 119.99342 * 352.70926 * 5 3 2 38 38 H 0.97001 * 119.99792 * 0.02562 * 8 6 5 39 39 H 1.09007 * 109.47277 * 295.39752 * 9 8 6 40 40 H 1.09002 * 109.47162 * 55.39154 * 9 8 6 41 41 H 1.08999 * 109.50567 * 303.15888 * 12 10 9 42 42 H 1.09001 * 109.50513 * 63.28310 * 12 10 9 43 43 H 1.08994 * 109.51241 * 61.26176 * 14 13 12 44 44 H 1.09002 * 109.50849 * 181.34927 * 14 13 12 45 45 H 1.09003 * 109.50903 * 176.78326 * 15 14 13 46 46 H 1.09001 * 109.50764 * 296.87540 * 15 14 13 47 47 H 1.09004 * 109.47730 * 282.67410 * 17 16 10 48 48 H 1.09006 * 109.47274 * 42.67552 * 17 16 10 49 49 H 0.96998 * 120.00015 * 0.02562 * 20 18 17 50 50 H 0.96999 * 119.99937 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1763 2.1691 -1.3002 5 6 2.3487 2.0143 1.1473 6 6 2.9882 3.3389 1.1383 7 8 3.3255 3.8443 0.0847 8 7 3.2003 3.9927 2.2977 9 6 3.8427 5.3093 2.2892 10 6 3.8600 5.8776 3.7097 11 1 4.2968 6.8762 3.6970 12 6 4.6935 4.9665 4.6147 13 8 4.6444 5.4610 5.9557 14 6 3.3207 5.5426 6.4911 15 6 2.4733 6.4595 5.6051 16 7 2.4855 5.9485 4.2266 17 6 1.6363 6.7694 3.3533 18 6 0.1866 6.4852 3.6509 19 8 -0.1100 5.6784 4.5067 20 7 -0.7804 7.1282 2.9668 21 6 -2.0993 6.8691 3.2373 22 1 -2.3633 6.1503 3.9986 23 6 -3.0962 7.5325 2.5323 24 7 -2.7750 8.4076 1.6062 25 14 -4.8932 7.1801 2.9012 26 1 -5.1803 7.5064 4.3212 27 1 -5.7518 8.0104 2.0188 28 1 -5.1762 5.7430 2.6566 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2029 2.0846 -1.6564 35 1 1.4986 1.7444 -2.0408 36 1 1.9313 3.2196 -1.1438 37 1 2.1359 1.5237 2.0857 38 1 2.9316 3.5896 3.1380 39 1 4.8653 5.2124 1.9242 40 1 3.2860 5.9811 1.6358 41 1 4.2889 3.9549 4.5847 42 1 5.7270 4.9562 4.2682 43 1 2.8761 4.5478 6.5157 44 1 3.3613 5.9482 7.5020 45 1 1.4487 6.4795 5.9767 46 1 2.8870 7.4678 5.6239 47 1 1.8438 7.8245 3.5320 48 1 1.8472 6.5292 2.3112 49 1 -0.5433 7.7736 2.2827 50 1 -3.4709 8.8709 1.1144 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673038835.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:06 Heat of formation + Delta-G solvation = -118.647937 kcal Electronic energy + Delta-G solvation = -30834.187358 eV Core-core repulsion = 26667.965707 eV Total energy + Delta-G solvation = -4166.221652 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.42570 -40.51340 -39.69049 -37.45470 -36.81046 -35.98561 -35.29665 -33.27165 -32.55426 -31.73017 -30.42110 -29.01501 -27.55628 -27.04478 -25.36506 -24.97550 -23.60067 -22.15934 -21.24531 -20.69432 -19.88678 -19.64490 -18.13925 -17.95049 -17.42408 -17.31793 -16.73415 -16.53228 -16.35903 -16.08188 -15.84721 -15.79614 -15.46961 -15.40299 -15.05641 -14.93223 -14.66761 -14.56215 -14.10566 -13.93168 -13.75606 -13.49142 -13.47638 -13.11361 -13.02186 -13.01165 -12.82748 -12.60756 -12.43935 -12.38631 -12.27308 -12.14338 -12.11682 -11.76263 -11.54026 -11.44202 -10.78621 -10.58442 -10.27126 -10.20854 -10.00630 -9.75430 -9.35558 -8.46344 -5.95094 0.43822 1.38481 1.40049 1.50995 2.04970 2.19960 2.29343 2.41545 2.60051 2.87893 3.19847 3.32491 3.66853 3.70315 3.78868 3.90817 3.94870 4.12326 4.21683 4.25071 4.27040 4.32005 4.34528 4.42062 4.44395 4.47603 4.60672 4.64050 4.72747 4.74915 4.76435 4.83375 4.84445 4.90466 4.99701 4.99809 5.06683 5.14196 5.35396 5.39893 5.50422 5.60984 5.63541 5.75092 5.95207 6.03971 6.15037 6.59455 6.65085 7.12583 7.32735 7.56026 8.11001 8.71027 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006415 B = 0.004425 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4363.766304 B = 6325.932492 C = 9473.214782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.027 4.027 4 C -0.120 4.120 5 C -0.246 4.246 6 C 0.537 3.463 7 O -0.580 6.580 8 N -0.707 5.707 9 C 0.130 3.870 10 C 0.039 3.961 11 H 0.075 0.925 12 C 0.073 3.927 13 O -0.392 6.392 14 C 0.073 3.927 15 C 0.024 3.976 16 N -0.515 5.515 17 C 0.054 3.946 18 C 0.447 3.553 19 O -0.607 6.607 20 N -0.577 5.577 21 C -0.329 4.329 22 H 0.081 0.919 23 C -0.014 4.014 24 N -0.923 5.923 25 Si 0.992 3.008 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.272 1.272 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.141 0.859 38 H 0.410 0.590 39 H 0.091 0.909 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.124 0.876 43 H 0.057 0.943 44 H 0.116 0.884 45 H 0.072 0.928 46 H 0.043 0.957 47 H 0.065 0.935 48 H 0.099 0.901 49 H 0.392 0.608 50 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.576 -11.399 0.343 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.128 4.128 3 C -0.029 4.029 4 C -0.177 4.177 5 C -0.267 4.267 6 C 0.328 3.672 7 O -0.463 6.463 8 N -0.358 5.358 9 C 0.005 3.995 10 C -0.069 4.069 11 H 0.093 0.907 12 C -0.004 4.004 13 O -0.310 6.310 14 C -0.004 4.004 15 C -0.104 4.104 16 N -0.241 5.241 17 C -0.077 4.077 18 C 0.234 3.766 19 O -0.492 6.492 20 N -0.214 5.214 21 C -0.458 4.458 22 H 0.099 0.901 23 C -0.214 4.214 24 N -0.564 5.564 25 Si 0.815 3.185 26 H -0.195 1.195 27 H -0.197 1.197 28 H -0.197 1.197 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.159 0.841 38 H 0.247 0.753 39 H 0.109 0.891 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.142 0.858 43 H 0.075 0.925 44 H 0.134 0.866 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.083 0.917 48 H 0.117 0.883 49 H 0.225 0.775 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.485 -11.853 0.207 18.718 hybrid contribution -1.192 1.320 -0.079 1.780 sum 13.294 -10.533 0.128 16.961 Atomic orbital electron populations 1.21744 0.94297 1.02887 1.01764 1.20805 0.96424 0.90862 1.04677 1.22818 0.89282 0.96058 0.94761 1.21052 1.02286 0.99907 0.94406 1.22488 1.08207 0.95923 1.00080 1.18929 0.78729 0.86265 0.83267 1.90724 1.53854 1.70192 1.31514 1.45748 1.61463 1.19341 1.09267 1.21359 0.98669 0.84279 0.95155 1.22698 0.89077 1.00674 0.94501 0.90693 1.22789 1.00939 0.95894 0.80772 1.87962 1.27713 1.86362 1.28956 1.22658 0.81610 0.99126 0.97024 1.22788 1.01510 0.97211 0.88896 1.61720 1.08452 1.52159 1.01767 1.21772 0.90436 0.96625 0.98875 1.20588 0.87858 0.83908 0.84273 1.90466 1.84073 1.38337 1.36368 1.41944 1.05520 1.38624 1.35344 1.19602 0.82429 1.23492 1.20324 0.90106 1.26033 1.04235 0.95611 0.95473 1.69676 1.35881 1.26898 1.23976 0.85011 0.76753 0.78357 0.78367 1.19511 1.19692 1.19722 0.93711 0.92884 0.90260 0.88704 0.89355 0.90561 0.91065 0.92258 0.84110 0.75299 0.89111 0.92444 0.92065 0.85790 0.92466 0.86612 0.90979 0.93902 0.91662 0.88285 0.77458 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.89 71.98 0.71 -1.88 16 2 C -0.09 -1.47 6.08 29.85 0.18 -1.29 16 3 C -0.03 -0.62 5.36 -17.62 -0.09 -0.72 16 4 C -0.12 -3.00 8.48 71.24 0.60 -2.40 16 5 C -0.25 -6.17 9.60 23.43 0.22 -5.94 16 6 C 0.54 15.82 7.61 86.57 0.66 16.48 16 7 O -0.58 -20.16 13.28 -4.10 -0.05 -20.21 16 8 N -0.71 -18.18 5.13 -466.71 -2.39 -20.58 16 9 C 0.13 3.05 4.85 86.38 0.42 3.47 16 10 C 0.04 0.88 2.25 44.93 0.10 0.98 16 11 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 12 C 0.07 1.41 6.18 72.01 0.45 1.85 16 13 O -0.39 -8.97 10.83 -148.98 -1.61 -10.58 16 14 C 0.07 1.71 7.01 72.01 0.50 2.22 16 15 C 0.02 0.69 5.31 86.31 0.46 1.15 16 16 N -0.52 -15.26 3.76 -874.50 -3.29 -18.55 16 17 C 0.05 1.88 5.32 85.56 0.45 2.33 16 18 C 0.45 21.00 7.51 87.66 0.66 21.66 16 19 O -0.61 -32.11 14.55 -3.08 -0.04 -32.16 16 20 N -0.58 -29.88 5.29 -306.98 -1.62 -31.50 16 21 C -0.33 -18.67 9.68 84.04 0.81 -17.86 16 22 H 0.08 4.84 7.16 -2.92 -0.02 4.82 16 23 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 24 N -0.92 -50.70 13.05 21.66 0.28 -50.41 16 25 Si 0.99 43.16 29.55 68.60 2.03 45.19 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 29 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.20 8.03 -2.39 -0.02 1.19 16 34 H 0.08 1.87 8.05 -2.39 -0.02 1.85 16 35 H 0.07 1.47 8.09 -2.38 -0.02 1.45 16 36 H 0.06 1.89 6.12 -2.39 -0.01 1.87 16 37 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 38 H 0.41 10.10 7.14 -92.71 -0.66 9.44 16 39 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.06 1.59 6.17 -2.39 -0.01 1.57 16 41 H 0.06 1.17 6.85 -2.39 -0.02 1.15 16 42 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.07 2.59 6.55 -2.39 -0.02 2.57 16 46 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.07 2.09 8.03 -2.39 -0.02 2.07 16 48 H 0.10 3.35 5.54 -2.38 -0.01 3.34 16 49 H 0.39 19.77 7.90 -92.71 -0.73 19.03 16 50 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -70.05 400.79 -0.53 -70.59 By element: Atomic # 1 Polarization: 48.89 SS G_CDS: -0.43 Total: 48.45 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 6.61 Total: 19.77 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -7.02 Total: -121.04 kcal Atomic # 8 Polarization: -61.24 SS G_CDS: -1.71 Total: -62.96 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -70.05 -0.53 -70.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673038835.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.063 kcal (2) G-P(sol) polarization free energy of solvation -70.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds