Wall clock time and date at job start Sat Apr 11 2020 05:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 6 6 H 1.09002 * 109.47103 * 300.00247 * 5 2 1 7 7 C 1.53002 * 109.47106 * 60.00162 * 5 2 1 8 8 N 1.46500 * 109.47364 * 175.00051 * 7 5 2 9 9 C 1.36933 * 120.00095 * 179.97438 * 8 7 5 10 10 H 1.08002 * 120.00223 * 0.02562 * 9 8 7 11 11 C 1.38811 * 120.00362 * 180.02562 * 9 8 7 12 12 N 1.31626 * 119.99525 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00314 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47311 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47211 * 120.00020 * 13 11 9 16 16 H 1.48504 * 109.47000 * 239.99599 * 13 11 9 17 17 N 1.46507 * 109.47485 * 179.97438 * 5 2 1 18 18 C 1.34777 * 119.99542 * 85.00034 * 17 5 2 19 19 O 1.21278 * 120.00346 * 0.02562 * 18 17 5 20 20 C 1.50698 * 119.99551 * 179.97438 * 18 17 5 21 21 C 1.53003 * 109.46857 * 179.97438 * 20 18 17 22 22 N 1.46507 * 109.46848 * 180.02562 * 21 20 18 23 23 C 1.33874 * 122.76049 * 269.70754 * 22 21 20 24 24 O 1.21226 * 125.39947 * 359.97438 * 23 22 21 25 25 C 1.51315 * 109.20410 * 179.84271 * 23 22 21 26 26 C 1.54230 * 103.55669 * 0.39354 * 25 23 22 27 27 C 1.33876 * 122.76170 * 90.00675 * 22 21 20 28 28 O 1.21233 * 125.39246 * 359.97438 * 27 22 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 36 36 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 38 38 H 1.09002 * 109.46816 * 295.00379 * 7 5 2 39 39 H 1.09000 * 109.47059 * 55.00035 * 7 5 2 40 40 H 0.96996 * 120.00032 * 0.02562 * 8 7 5 41 41 H 0.97006 * 119.99349 * 180.02562 * 12 11 9 42 42 H 0.96997 * 120.00022 * 265.00172 * 17 5 2 43 43 H 1.08995 * 109.47586 * 300.00013 * 20 18 17 44 44 H 1.09001 * 109.47252 * 60.00314 * 20 18 17 45 45 H 1.08995 * 109.47147 * 300.00421 * 21 20 18 46 46 H 1.09003 * 109.46915 * 60.00729 * 21 20 18 47 47 H 1.08999 * 110.80009 * 241.78604 * 25 23 22 48 48 H 1.08999 * 110.54386 * 118.87865 * 25 23 22 49 49 H 1.09004 * 110.60427 * 241.26278 * 26 25 23 50 50 H 1.08999 * 110.61033 * 118.28651 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0400 -0.7213 -1.2491 6 1 1.6767 -1.7489 -1.2491 7 6 1.5301 -0.0001 -2.4984 8 7 2.1143 -0.6177 -3.6915 9 6 1.8005 -0.1370 -4.9347 10 1 1.1226 0.6977 -5.0357 11 6 2.3536 -0.7225 -6.0653 12 7 3.1793 -1.7402 -5.9422 13 14 1.9261 -0.0663 -7.7611 14 1 0.9831 1.0731 -7.6278 15 1 3.1641 0.3920 -8.4411 16 1 1.2907 -1.1430 -8.5627 17 7 3.5051 -0.7207 -1.2494 18 6 4.1794 -1.6765 -0.5798 19 8 3.5734 -2.5372 0.0225 20 6 5.6864 -1.6763 -0.5806 21 6 6.1969 -2.8572 0.2475 22 7 7.6620 -2.8566 0.2473 23 6 8.3865 -3.5074 -0.6713 24 8 7.9356 -4.1588 -1.5889 25 6 9.8575 -3.2985 -0.3845 26 6 9.8574 -2.4131 0.8783 27 6 8.3864 -2.2100 1.1689 28 8 7.9352 -1.5639 2.0901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 -1.7488 1.2493 36 1 3.1300 -0.7207 1.2495 37 1 1.6766 -0.2073 2.1393 38 1 0.4438 -0.0770 -2.5443 39 1 1.8185 1.0502 -2.4548 40 1 2.7228 -1.3676 -3.6009 41 1 3.5661 -2.1491 -6.7323 42 1 3.9897 -0.0325 -1.7315 43 1 6.0492 -1.7662 -1.6045 44 1 6.0498 -0.7447 -0.1469 45 1 5.8340 -2.7668 1.2713 46 1 5.8335 -3.7890 -0.1859 47 1 10.3442 -2.7845 -1.2133 48 1 10.3473 -4.2515 -0.1847 49 1 10.3440 -1.4586 0.6776 50 1 10.3447 -2.9267 1.7071 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677263263.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:36 Heat of formation + Delta-G solvation = -99.549574 kcal Electronic energy + Delta-G solvation = -30815.353531 eV Core-core repulsion = 26649.960047 eV Total energy + Delta-G solvation = -4165.393485 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.10821 -40.04686 -38.78072 -37.53584 -36.09161 -34.42767 -34.31916 -33.19664 -31.18145 -30.54148 -27.74804 -27.11344 -26.72830 -26.48457 -24.71547 -23.53098 -22.63652 -21.46992 -20.30015 -19.61449 -18.54829 -17.79525 -17.23898 -17.09504 -16.71482 -16.36594 -15.78163 -15.68748 -14.93503 -14.72159 -14.47090 -14.36850 -14.29537 -14.17301 -13.90072 -13.68801 -13.44373 -13.18086 -13.04167 -12.97435 -12.65024 -12.49581 -12.13269 -11.92434 -11.78707 -11.76314 -11.35520 -11.34759 -11.18688 -11.04997 -10.88182 -10.83412 -10.71104 -10.49206 -10.26970 -10.20494 -10.07869 -9.91386 -9.74882 -9.50640 -8.90309 -8.56342 -6.94930 -5.78206 -3.07985 1.25131 2.22981 2.44044 2.91672 3.41423 3.47215 3.49654 3.53720 3.74919 3.89382 4.06771 4.44758 4.55818 4.74380 4.85938 4.92313 4.96915 5.05612 5.08134 5.18244 5.18750 5.22719 5.31070 5.43324 5.53771 5.58868 5.61108 5.73938 5.80875 5.84627 5.91973 5.93950 6.06042 6.10367 6.14233 6.18522 6.32755 6.48031 6.48191 6.52493 6.59546 6.66008 6.75368 6.98331 7.06040 7.51906 7.67964 7.85892 8.39478 8.53357 9.51312 10.07711 10.42891 11.44029 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008877 B = 0.003491 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.622209 B = 8019.763176 C =10518.407618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.076 4.076 3 C -0.141 4.141 4 C -0.129 4.129 5 C 0.149 3.851 6 H 0.087 0.913 7 C 0.142 3.858 8 N -0.731 5.731 9 C -0.242 4.242 10 H 0.070 0.930 11 C -0.012 4.012 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.705 5.705 18 C 0.523 3.477 19 O -0.544 6.544 20 C -0.158 4.158 21 C 0.117 3.883 22 N -0.575 5.575 23 C 0.521 3.479 24 O -0.469 6.469 25 C -0.157 4.157 26 C -0.157 4.157 27 C 0.525 3.475 28 O -0.482 6.482 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.041 0.959 38 H 0.035 0.965 39 H 0.028 0.972 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.404 0.596 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.104 0.896 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.452 1.308 16.801 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.186 4.186 5 C 0.044 3.956 6 H 0.105 0.895 7 C 0.014 3.986 8 N -0.376 5.376 9 C -0.373 4.373 10 H 0.088 0.912 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.355 5.355 18 C 0.309 3.691 19 O -0.422 6.422 20 C -0.199 4.199 21 C -0.004 4.004 22 N -0.318 5.318 23 C 0.309 3.691 24 O -0.339 6.339 25 C -0.197 4.197 26 C -0.197 4.197 27 C 0.313 3.687 28 O -0.353 6.353 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.046 0.954 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.238 0.762 43 H 0.120 0.880 44 H 0.112 0.888 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.140 0.860 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.411 0.780 17.079 20.556 hybrid contribution 0.201 0.458 -1.335 1.426 sum 11.612 1.238 15.744 19.602 Atomic orbital electron populations 1.21885 0.94215 1.01990 1.01751 1.20897 0.95741 0.95677 0.95474 1.21909 1.00872 0.95453 1.01591 1.21879 1.00966 1.00241 0.95521 1.21277 0.79063 1.00874 0.94341 0.89533 1.21096 0.96652 0.95405 0.85459 1.42367 1.55414 1.39327 1.00516 1.19245 1.22418 1.12045 0.83608 0.91153 1.24748 0.99876 0.98354 0.97814 1.69685 1.34618 1.25080 1.28404 0.86136 0.77449 0.77937 0.84754 1.20577 1.21901 1.21866 1.45901 1.07476 1.30143 1.52006 1.20032 0.88912 0.81464 0.78706 1.90692 1.70162 1.37350 1.44000 1.21929 0.94215 1.00389 1.03390 1.21497 0.75677 1.00295 1.02945 1.46837 1.09719 1.47089 1.28144 1.20883 0.90035 0.77531 0.80633 1.90857 1.77689 1.36687 1.28691 1.22482 0.94050 1.03472 0.99695 1.22480 0.93966 1.03563 0.99659 1.20862 0.90097 0.77149 0.80546 1.90796 1.77882 1.37322 1.29320 0.92569 0.91913 0.92922 0.93228 0.92945 0.91928 0.91994 0.92974 0.94041 0.94761 0.95419 0.78062 0.93524 0.76173 0.87972 0.88762 0.88092 0.87794 0.86015 0.86202 0.86122 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.12 37.16 0.30 -1.52 16 2 C -0.08 -1.06 0.62 -154.51 -0.10 -1.16 16 3 C -0.14 -1.78 7.97 37.16 0.30 -1.49 16 4 C -0.13 -1.83 7.00 37.16 0.26 -1.57 16 5 C 0.15 2.50 1.69 -67.93 -0.11 2.38 16 6 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 7 C 0.14 2.73 5.10 -4.04 -0.02 2.71 16 8 N -0.73 -18.03 5.43 -59.91 -0.33 -18.35 16 9 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 10 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 11 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 12 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 13 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 17 N -0.71 -11.13 3.64 -53.80 -0.20 -11.32 16 18 C 0.52 8.26 6.18 -10.99 -0.07 8.20 16 19 O -0.54 -9.86 13.11 5.56 0.07 -9.78 16 20 C -0.16 -2.05 6.02 -27.88 -0.17 -2.22 16 21 C 0.12 1.47 4.85 -4.04 -0.02 1.45 16 22 N -0.57 -6.00 2.55 -115.33 -0.29 -6.29 16 23 C 0.52 5.33 8.08 -11.09 -0.09 5.24 16 24 O -0.47 -6.92 17.47 5.60 0.10 -6.83 16 25 C -0.16 -0.75 7.03 -26.94 -0.19 -0.94 16 26 C -0.16 -0.67 7.03 -26.94 -0.19 -0.86 16 27 C 0.52 4.87 8.08 -11.09 -0.09 4.78 16 28 O -0.48 -6.13 17.48 5.60 0.10 -6.03 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.82 6.54 -51.93 -0.34 0.48 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.66 7.60 -51.93 -0.39 0.26 16 34 H 0.06 0.81 6.32 -51.93 -0.33 0.49 16 35 H 0.06 0.97 7.53 -51.93 -0.39 0.58 16 36 H 0.05 0.78 5.78 -51.93 -0.30 0.48 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.03 0.68 6.71 -51.93 -0.35 0.33 16 39 H 0.03 0.52 6.17 -51.93 -0.32 0.20 16 40 H 0.39 10.21 7.33 -40.82 -0.30 9.91 16 41 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.40 6.13 8.60 -40.82 -0.35 5.78 16 43 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.10 1.30 7.79 -51.93 -0.40 0.89 16 46 H 0.10 1.46 7.78 -51.93 -0.40 1.06 16 47 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.12 0.32 8.14 -51.93 -0.42 -0.11 16 50 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 400.16 15.07 6.03 6.03 Total: -1.00 -35.15 400.16 -7.30 -42.45 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -8.05 Total: 12.43 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -0.43 Total: 7.77 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: -0.09 Total: -63.31 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: 0.27 Total: -22.64 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.15 -7.30 -42.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677263263.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.101 kcal (2) G-P(sol) polarization free energy of solvation -35.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds