Wall clock time and date at job start Sat Apr 11 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 6 6 H 1.09002 * 109.47103 * 300.00247 * 5 2 1 7 7 C 1.53002 * 109.47106 * 60.00162 * 5 2 1 8 8 N 1.46500 * 109.47364 * 175.00051 * 7 5 2 9 9 C 1.36933 * 120.00095 * 179.97438 * 8 7 5 10 10 H 1.08002 * 120.00223 * 0.02562 * 9 8 7 11 11 C 1.38811 * 120.00362 * 180.02562 * 9 8 7 12 12 N 1.31626 * 119.99525 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00314 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47311 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47211 * 120.00020 * 13 11 9 16 16 H 1.48504 * 109.47000 * 239.99599 * 13 11 9 17 17 N 1.46507 * 109.47485 * 179.97438 * 5 2 1 18 18 C 1.34777 * 119.99542 * 85.00034 * 17 5 2 19 19 O 1.21278 * 120.00346 * 0.02562 * 18 17 5 20 20 C 1.50698 * 119.99551 * 179.97438 * 18 17 5 21 21 C 1.53003 * 109.46857 * 179.97438 * 20 18 17 22 22 N 1.46507 * 109.46848 * 180.02562 * 21 20 18 23 23 C 1.33874 * 122.76049 * 269.70754 * 22 21 20 24 24 O 1.21226 * 125.39947 * 359.97438 * 23 22 21 25 25 C 1.51315 * 109.20410 * 179.84271 * 23 22 21 26 26 C 1.54230 * 103.55669 * 0.39354 * 25 23 22 27 27 C 1.33876 * 122.76170 * 90.00675 * 22 21 20 28 28 O 1.21233 * 125.39246 * 359.97438 * 27 22 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 36 36 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 38 38 H 1.09002 * 109.46816 * 295.00379 * 7 5 2 39 39 H 1.09000 * 109.47059 * 55.00035 * 7 5 2 40 40 H 0.96996 * 120.00032 * 0.02562 * 8 7 5 41 41 H 0.97006 * 119.99349 * 180.02562 * 12 11 9 42 42 H 0.96997 * 120.00022 * 265.00172 * 17 5 2 43 43 H 1.08995 * 109.47586 * 300.00013 * 20 18 17 44 44 H 1.09001 * 109.47252 * 60.00314 * 20 18 17 45 45 H 1.08995 * 109.47147 * 300.00421 * 21 20 18 46 46 H 1.09003 * 109.46915 * 60.00729 * 21 20 18 47 47 H 1.08999 * 110.80009 * 241.78604 * 25 23 22 48 48 H 1.08999 * 110.54386 * 118.87865 * 25 23 22 49 49 H 1.09004 * 110.60427 * 241.26278 * 26 25 23 50 50 H 1.08999 * 110.61033 * 118.28651 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0400 -0.7213 -1.2491 6 1 1.6767 -1.7489 -1.2491 7 6 1.5301 -0.0001 -2.4984 8 7 2.1143 -0.6177 -3.6915 9 6 1.8005 -0.1370 -4.9347 10 1 1.1226 0.6977 -5.0357 11 6 2.3536 -0.7225 -6.0653 12 7 3.1793 -1.7402 -5.9422 13 14 1.9261 -0.0663 -7.7611 14 1 0.9831 1.0731 -7.6278 15 1 3.1641 0.3920 -8.4411 16 1 1.2907 -1.1430 -8.5627 17 7 3.5051 -0.7207 -1.2494 18 6 4.1794 -1.6765 -0.5798 19 8 3.5734 -2.5372 0.0225 20 6 5.6864 -1.6763 -0.5806 21 6 6.1969 -2.8572 0.2475 22 7 7.6620 -2.8566 0.2473 23 6 8.3865 -3.5074 -0.6713 24 8 7.9356 -4.1588 -1.5889 25 6 9.8575 -3.2985 -0.3845 26 6 9.8574 -2.4131 0.8783 27 6 8.3864 -2.2100 1.1689 28 8 7.9352 -1.5639 2.0901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 -1.7488 1.2493 36 1 3.1300 -0.7207 1.2495 37 1 1.6766 -0.2073 2.1393 38 1 0.4438 -0.0770 -2.5443 39 1 1.8185 1.0502 -2.4548 40 1 2.7228 -1.3676 -3.6009 41 1 3.5661 -2.1491 -6.7323 42 1 3.9897 -0.0325 -1.7315 43 1 6.0492 -1.7662 -1.6045 44 1 6.0498 -0.7447 -0.1469 45 1 5.8340 -2.7668 1.2713 46 1 5.8335 -3.7890 -0.1859 47 1 10.3442 -2.7845 -1.2133 48 1 10.3473 -4.2515 -0.1847 49 1 10.3440 -1.4586 0.6776 50 1 10.3447 -2.9267 1.7071 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677263263.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:35 Heat of formation + Delta-G solvation = -124.522172 kcal Electronic energy + Delta-G solvation = -30816.436424 eV Core-core repulsion = 26649.960047 eV Total energy + Delta-G solvation = -4166.476378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.89081 -41.36344 -39.65912 -38.84630 -36.99546 -36.21751 -35.11199 -34.62516 -33.02369 -31.56630 -29.34474 -28.16810 -27.89626 -27.09158 -26.10823 -25.15046 -23.29117 -23.07754 -21.57039 -20.45052 -19.87823 -19.17658 -18.65281 -17.92931 -17.56900 -17.52466 -17.15739 -16.97477 -16.51343 -15.77510 -15.72026 -15.42797 -15.29916 -15.09788 -14.96991 -14.88773 -14.84060 -14.52470 -14.31072 -14.04673 -13.80340 -13.49999 -13.41589 -13.09319 -13.04603 -12.96072 -12.78467 -12.56219 -12.47023 -12.32065 -12.15225 -12.07628 -12.03344 -11.76910 -11.68573 -11.65052 -11.31345 -11.11425 -11.08689 -10.96955 -10.74820 -9.91422 -9.00840 -7.95286 -5.24993 0.49365 1.41695 1.46684 1.47786 1.57618 1.61031 1.69439 2.29224 2.55006 3.22321 3.28633 3.39171 3.58566 3.63816 3.65745 3.75121 3.82015 3.89154 4.03408 4.21334 4.23113 4.28160 4.32983 4.35459 4.44938 4.52040 4.63295 4.75976 4.80080 4.81153 4.82517 4.88962 4.93167 4.94754 4.96473 5.05087 5.07032 5.14504 5.22708 5.30090 5.42555 5.49519 5.54043 5.62945 5.82115 6.25151 6.32865 6.53942 6.72445 7.22615 7.32329 8.06159 8.29718 9.27882 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008877 B = 0.003491 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.622209 B = 8019.763176 C =10518.407618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 C -0.136 4.136 4 C -0.120 4.120 5 C 0.158 3.842 6 H 0.054 0.946 7 C 0.145 3.855 8 N -0.743 5.743 9 C -0.242 4.242 10 H 0.079 0.921 11 C -0.074 4.074 12 N -0.969 5.969 13 Si 0.972 3.028 14 H -0.264 1.264 15 H -0.293 1.293 16 H -0.298 1.298 17 N -0.703 5.703 18 C 0.519 3.481 19 O -0.570 6.570 20 C -0.145 4.145 21 C 0.120 3.880 22 N -0.579 5.579 23 C 0.513 3.487 24 O -0.526 6.526 25 C -0.140 4.140 26 C -0.138 4.138 27 C 0.519 3.481 28 O -0.521 6.521 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.041 0.959 37 H 0.062 0.938 38 H 0.037 0.963 39 H 0.045 0.955 40 H 0.372 0.628 41 H 0.249 0.751 42 H 0.407 0.593 43 H 0.095 0.905 44 H 0.115 0.885 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.145 0.855 48 H 0.147 0.853 49 H 0.149 0.851 50 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.977 3.351 17.722 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.072 4.072 3 C -0.194 4.194 4 C -0.178 4.178 5 C 0.053 3.947 6 H 0.072 0.928 7 C 0.018 3.982 8 N -0.386 5.386 9 C -0.373 4.373 10 H 0.097 0.903 11 C -0.266 4.266 12 N -0.620 5.620 13 Si 0.802 3.198 14 H -0.188 1.188 15 H -0.220 1.220 16 H -0.226 1.226 17 N -0.353 5.353 18 C 0.306 3.694 19 O -0.450 6.450 20 C -0.185 4.185 21 C -0.002 4.002 22 N -0.322 5.322 23 C 0.305 3.695 24 O -0.400 6.400 25 C -0.179 4.179 26 C -0.177 4.177 27 C 0.312 3.688 28 O -0.395 6.395 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.204 0.796 41 H 0.058 0.942 42 H 0.243 0.757 43 H 0.113 0.887 44 H 0.133 0.867 45 H 0.113 0.887 46 H 0.098 0.902 47 H 0.163 0.837 48 H 0.165 0.835 49 H 0.166 0.834 50 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 12.938 2.874 18.037 22.382 hybrid contribution -0.333 -0.186 -1.535 1.581 sum 12.605 2.687 16.502 20.939 Atomic orbital electron populations 1.21883 0.93223 1.01790 1.02806 1.20854 0.96485 0.96275 0.93565 1.21869 1.00915 0.94097 1.02481 1.21774 1.00209 0.99300 0.96481 1.21098 0.79633 0.99139 0.94821 0.92765 1.21224 0.96424 0.95972 0.84538 1.42553 1.55411 1.39156 1.01491 1.19661 1.21390 1.11564 0.84707 0.90277 1.25552 1.00480 0.99030 1.01539 1.69853 1.36379 1.26840 1.28907 0.85089 0.77196 0.77464 0.80082 1.18786 1.22010 1.22556 1.45872 1.07178 1.30275 1.51947 1.20493 0.90051 0.80814 0.78062 1.90678 1.70947 1.38256 1.45161 1.21826 0.92004 1.01549 1.03167 1.21217 0.77951 0.98954 1.02093 1.47051 1.08670 1.47514 1.28964 1.21966 0.92425 0.75873 0.79241 1.90830 1.79088 1.39145 1.30971 1.22612 0.89408 1.05253 1.00641 1.22614 0.89762 1.05128 1.00156 1.21825 0.92127 0.75683 0.79213 1.90778 1.78980 1.38967 1.30737 0.93470 0.92052 0.90627 0.91214 0.92922 0.92108 0.94101 0.94024 0.91921 0.94571 0.93748 0.79575 0.94191 0.75715 0.88664 0.86693 0.88722 0.90196 0.83692 0.83486 0.83351 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.12 71.98 0.58 -2.85 16 2 C -0.07 -1.90 0.62 -52.18 -0.03 -1.93 16 3 C -0.14 -3.16 7.97 71.98 0.57 -2.59 16 4 C -0.12 -3.37 7.00 71.98 0.50 -2.87 16 5 C 0.16 5.40 1.69 44.99 0.08 5.48 16 6 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 7 C 0.14 5.57 5.10 86.38 0.44 6.01 16 8 N -0.74 -37.16 5.43 -343.45 -1.87 -39.03 16 9 C -0.24 -13.26 9.99 84.03 0.84 -12.42 16 10 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 11 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 12 N -0.97 -59.91 13.06 21.65 0.28 -59.63 16 13 Si 0.97 46.06 29.55 68.60 2.03 48.08 16 14 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 15 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 16 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 17 N -0.70 -22.80 3.64 -442.53 -1.61 -24.41 16 18 C 0.52 17.21 6.18 87.66 0.54 17.76 16 19 O -0.57 -21.98 13.11 -3.02 -0.04 -22.02 16 20 C -0.14 -3.92 6.02 29.85 0.18 -3.74 16 21 C 0.12 3.24 4.85 86.38 0.42 3.65 16 22 N -0.58 -12.15 2.55 -756.64 -1.93 -14.08 16 23 C 0.51 10.34 8.08 87.99 0.71 11.05 16 24 O -0.53 -16.25 17.47 -2.86 -0.05 -16.30 16 25 C -0.14 -0.86 7.03 30.46 0.21 -0.65 16 26 C -0.14 -0.64 7.03 30.46 0.21 -0.43 16 27 C 0.52 8.93 8.08 87.99 0.71 9.64 16 28 O -0.52 -12.88 17.48 -2.88 -0.05 -12.93 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.52 6.54 -2.39 -0.02 1.51 16 31 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.05 1.22 7.60 -2.39 -0.02 1.20 16 34 H 0.06 1.44 6.32 -2.39 -0.02 1.42 16 35 H 0.04 1.30 7.53 -2.39 -0.02 1.29 16 36 H 0.04 1.24 5.78 -2.39 -0.01 1.23 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.04 1.41 6.71 -2.39 -0.02 1.39 16 39 H 0.04 1.60 6.17 -2.39 -0.01 1.59 16 40 H 0.37 20.41 7.33 -92.71 -0.68 19.73 16 41 H 0.25 15.02 8.31 -92.70 -0.77 14.25 16 42 H 0.41 12.55 8.60 -92.71 -0.80 11.75 16 43 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 44 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 45 H 0.09 2.62 7.79 -2.39 -0.02 2.60 16 46 H 0.08 2.50 7.78 -2.39 -0.02 2.48 16 47 H 0.15 0.36 8.14 -2.39 -0.02 0.34 16 48 H 0.15 0.23 8.14 -2.39 -0.02 0.22 16 49 H 0.15 0.03 8.14 -2.39 -0.02 0.01 16 50 H 0.15 -0.04 8.14 -2.39 -0.02 -0.06 16 Total: -1.00 -80.22 400.16 2.69 -77.53 By element: Atomic # 1 Polarization: 40.96 SS G_CDS: -0.51 Total: 40.45 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: 6.44 Total: 22.34 kcal Atomic # 7 Polarization: -132.02 SS G_CDS: -5.13 Total: -137.15 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -0.14 Total: -51.26 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -80.22 2.69 -77.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677263263.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.990 kcal (2) G-P(sol) polarization free energy of solvation -80.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds