Wall clock time and date at job start Sat Apr 11 2020 05:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 110.45491 * 2 1 4 4 O 1.21281 * 119.99880 * 239.29482 * 3 2 1 5 5 N 1.34776 * 120.00288 * 59.29321 * 3 2 1 6 6 C 1.46501 * 120.00116 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47100 * 180.02562 * 6 5 3 8 8 H 1.09005 * 109.46731 * 294.99564 * 7 6 5 9 9 N 1.46896 * 109.47591 * 54.99914 * 7 6 5 10 10 C 1.46896 * 111.00167 * 205.30972 * 9 7 6 11 11 C 1.50703 * 109.47356 * 181.89508 * 10 9 7 12 12 O 1.21300 * 119.99617 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00430 * 179.97438 * 11 10 9 14 14 C 1.37095 * 120.00170 * 179.97438 * 13 11 10 15 15 H 1.08002 * 119.99948 * 0.02562 * 14 13 11 16 16 C 1.38946 * 120.00097 * 180.02562 * 14 13 11 17 17 N 1.31420 * 119.99932 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00337 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47288 * 89.99868 * 18 16 14 20 20 H 1.48503 * 109.47423 * 209.99937 * 18 16 14 21 21 H 1.48502 * 109.47017 * 329.99997 * 18 16 14 22 22 C 1.53008 * 109.47131 * 175.00028 * 7 6 5 23 23 C 1.52993 * 117.49686 * 132.18431 * 22 7 6 24 24 C 1.52992 * 117.49763 * 63.56201 * 22 7 6 25 25 C 1.54502 * 110.51581 * 237.24655 * 2 1 3 26 26 C 1.54485 * 104.06327 * 241.35476 * 25 2 1 27 27 O 1.44424 * 104.80174 * 336.01890 * 26 25 2 28 28 C 1.44433 * 105.27709 * 40.50943 * 27 26 25 29 29 H 1.09002 * 109.47129 * 298.85445 * 1 2 3 30 30 H 1.08996 * 109.46754 * 178.85198 * 1 2 3 31 31 H 1.09004 * 109.46719 * 58.85258 * 1 2 3 32 32 H 0.96993 * 119.99971 * 0.02562 * 5 3 2 33 33 H 1.09004 * 109.47283 * 300.00013 * 6 5 3 34 34 H 1.09000 * 109.47242 * 59.99779 * 6 5 3 35 35 H 1.00905 * 110.99555 * 329.26235 * 9 7 6 36 36 H 1.09004 * 109.46744 * 301.88980 * 10 9 7 37 37 H 1.08999 * 109.47572 * 61.89059 * 10 9 7 38 38 H 0.97003 * 119.99311 * 0.02562 * 13 11 10 39 39 H 0.96998 * 119.99595 * 179.97438 * 17 16 14 40 40 H 1.08996 * 115.54621 * 277.89138 * 22 7 6 41 41 H 1.08995 * 117.50509 * 0.02562 * 23 22 7 42 42 H 1.09002 * 117.49757 * 145.02124 * 23 22 7 43 43 H 1.09000 * 117.50196 * 214.97709 * 24 22 7 44 44 H 1.09009 * 117.50238 * 0.02562 * 24 22 7 45 45 H 1.08998 * 110.51033 * 359.97438 * 25 2 1 46 46 H 1.08998 * 110.51618 * 122.71184 * 25 2 1 47 47 H 1.08993 * 110.37510 * 217.18861 * 26 25 2 48 48 H 1.09003 * 110.46794 * 94.89778 * 26 25 2 49 49 H 1.08994 * 110.37277 * 200.65315 * 28 27 26 50 50 H 1.09004 * 110.36586 * 78.31774 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4120 0.0000 4 8 2.7711 1.7927 -0.9031 5 7 1.7338 2.2517 1.0035 6 6 2.2453 3.6245 1.0032 7 6 1.7341 4.3596 2.2438 8 1 0.6497 4.4559 2.1878 9 7 2.0967 3.5997 3.4475 10 6 1.1734 3.8911 4.5522 11 6 1.6036 3.1311 5.7803 12 8 2.5829 2.4164 5.7392 13 7 0.9003 3.2453 6.9243 14 6 1.2914 2.5535 8.0414 15 1 2.1633 1.9172 8.0048 16 6 0.5660 2.6708 9.2207 17 7 -0.4952 3.4447 9.2651 18 14 1.0993 1.7287 10.7430 19 1 2.0439 2.5586 11.5331 20 1 -0.0919 1.4107 11.5709 21 1 1.7697 0.4679 10.3353 22 6 2.3670 5.7511 2.3092 23 6 1.4382 6.9378 2.5732 24 6 2.0377 6.7306 1.1810 25 6 2.0715 -0.7829 -1.2170 26 6 2.8759 -1.9429 -0.5894 27 8 3.2399 -1.4703 0.7259 28 6 2.0713 -0.7794 1.2190 29 1 -0.3633 0.4959 0.9001 30 1 -0.3633 -1.0274 -0.0206 31 1 -0.3633 0.5316 -0.8796 32 1 1.1627 1.9472 1.7259 33 1 3.3352 3.6062 1.0156 34 1 1.9008 4.1405 0.1070 35 1 2.1284 2.6098 3.2543 36 1 1.1860 4.9604 4.7637 37 1 0.1645 3.5880 4.2721 38 1 0.1170 3.8165 6.9570 39 1 -1.0018 3.5263 10.0883 40 1 3.3697 5.7919 2.7345 41 1 0.3764 6.7274 2.7008 42 1 1.8298 7.7598 3.1726 43 1 2.8236 7.4162 0.8643 44 1 1.3698 6.3839 0.3923 45 1 1.2492 -1.1704 -1.8184 46 1 2.7221 -0.1495 -1.8200 47 1 3.7690 -2.1482 -1.1794 48 1 2.2582 -2.8378 -0.5135 49 1 2.3464 -0.0911 2.0180 50 1 1.3286 -1.4948 1.5722 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690173411.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:50 Heat of formation + Delta-G solvation = -92.191812 kcal Electronic energy + Delta-G solvation = -30296.735284 eV Core-core repulsion = 26131.660856 eV Total energy + Delta-G solvation = -4165.074428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.93553 -39.16416 -38.33159 -37.77621 -35.47961 -34.24991 -33.96470 -33.43436 -31.25530 -30.24432 -29.18645 -26.75564 -26.18621 -24.42814 -23.73562 -23.22207 -22.47705 -21.81138 -20.35099 -19.67774 -19.21810 -17.96020 -17.61542 -16.52464 -16.46915 -16.17158 -15.83430 -15.56736 -15.37131 -15.19497 -15.02408 -14.56641 -14.28573 -14.17323 -13.97103 -13.63857 -13.50471 -13.30073 -13.07844 -12.79305 -12.49293 -12.35527 -12.03611 -11.91231 -11.70937 -11.66123 -11.53666 -11.52320 -11.40928 -11.31416 -11.05895 -10.97870 -10.41474 -10.37801 -10.27955 -10.23968 -10.04671 -9.74134 -9.53511 -9.27102 -8.52386 -8.17066 -7.99151 -6.44569 -3.85374 2.41989 2.86540 3.16170 3.25179 3.30847 3.69880 3.72433 3.86849 3.96705 4.02030 4.21589 4.30154 4.56390 4.61449 4.70446 4.72956 4.85126 4.93688 4.94942 5.00012 5.15184 5.17413 5.18333 5.23676 5.24212 5.36751 5.42171 5.42619 5.48823 5.51191 5.57308 5.60156 5.66699 5.69784 5.82134 5.86016 5.89222 5.94030 6.04149 6.17487 6.21580 6.28587 6.51806 7.09469 7.22071 7.50778 7.52829 7.99407 8.03307 8.58064 9.15240 9.51042 10.02377 10.73066 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008959 B = 0.003077 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.722589 B = 9098.648344 C =11552.208623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 C 0.534 3.466 4 O -0.533 6.533 5 N -0.729 5.729 6 C 0.121 3.879 7 C 0.108 3.892 8 H 0.049 0.951 9 N -0.659 5.659 10 C 0.051 3.949 11 C 0.439 3.561 12 O -0.581 6.581 13 N -0.563 5.563 14 C -0.299 4.299 15 H 0.103 0.897 16 C 0.023 3.977 17 N -0.902 5.902 18 Si 0.929 3.071 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.269 1.269 22 C -0.134 4.134 23 C -0.178 4.178 24 C -0.181 4.181 25 C -0.143 4.143 26 C 0.044 3.956 27 O -0.366 6.366 28 C 0.056 3.944 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.398 0.602 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.347 0.653 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.060 0.940 49 H 0.099 0.901 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.690 -1.649 -20.238 20.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.122 4.122 3 C 0.319 3.681 4 O -0.409 6.409 5 N -0.382 5.382 6 C -0.002 4.002 7 C -0.002 4.002 8 H 0.067 0.933 9 N -0.294 5.294 10 C -0.082 4.082 11 C 0.225 3.775 12 O -0.465 6.465 13 N -0.199 5.199 14 C -0.429 4.429 15 H 0.121 0.879 16 C -0.179 4.179 17 N -0.543 5.543 18 Si 0.756 3.244 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.153 4.153 23 C -0.215 4.215 24 C -0.219 4.219 25 C -0.180 4.180 26 C -0.032 4.032 27 O -0.285 6.285 28 C -0.022 4.022 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.233 0.767 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.168 0.832 36 H 0.108 0.892 37 H 0.060 0.940 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.135 0.865 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.101 0.899 46 H 0.118 0.882 47 H 0.111 0.889 48 H 0.078 0.922 49 H 0.117 0.883 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.963 -1.401 -20.431 20.502 hybrid contribution -1.658 -0.496 0.946 1.973 sum -2.622 -1.896 -19.485 19.752 Atomic orbital electron populations 1.21825 0.91190 1.03390 1.02965 1.22202 0.97939 0.93472 0.98591 1.20110 0.79900 0.86585 0.81458 1.90668 1.36921 1.77163 1.36166 1.46013 1.52851 1.13200 1.26121 1.21537 1.00557 0.80609 0.97528 1.21292 0.97095 0.92809 0.89052 0.93275 1.59951 1.52484 1.12578 1.04395 1.21750 0.93267 1.01490 0.91663 1.19789 0.86371 0.86721 0.84660 1.90543 1.28349 1.43065 1.84560 1.41856 1.26865 1.42156 1.09056 1.19704 1.11978 1.23644 0.87555 0.87901 1.25256 0.95741 0.97524 0.99363 1.69614 1.17490 1.38423 1.28788 0.85867 0.77928 0.79819 0.80746 1.20374 1.20943 1.19385 1.22219 1.00964 0.89205 1.02956 1.22999 0.99034 1.00468 0.98992 1.22949 1.03783 1.03067 0.92054 1.23059 1.00955 0.97164 0.96863 1.23447 0.99694 0.95900 0.84195 1.89205 1.34762 1.73423 1.31063 1.23573 0.88534 0.95188 0.94879 0.91634 0.90863 0.91531 0.76663 0.90059 0.90691 0.83174 0.89193 0.94017 0.77505 0.91872 0.86545 0.88956 0.88660 0.88703 0.89036 0.89911 0.88238 0.88873 0.92151 0.88328 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.17 37.16 0.30 -0.64 16 2 C -0.12 -1.14 0.89 -154.09 -0.14 -1.27 16 3 C 0.53 6.52 6.48 -10.98 -0.07 6.45 16 4 O -0.53 -8.29 15.30 5.56 0.08 -8.21 16 5 N -0.73 -7.90 4.64 -60.29 -0.28 -8.18 16 6 C 0.12 1.37 5.13 -4.04 -0.02 1.35 16 7 C 0.11 1.24 2.40 -67.71 -0.16 1.08 16 8 H 0.05 0.52 7.61 -51.93 -0.39 0.13 16 9 N -0.66 -9.86 5.89 -107.99 -0.64 -10.50 16 10 C 0.05 0.84 5.95 -4.98 -0.03 0.81 16 11 C 0.44 9.97 7.82 -10.99 -0.09 9.89 16 12 O -0.58 -15.36 15.82 5.54 0.09 -15.27 16 13 N -0.56 -13.83 5.29 -10.96 -0.06 -13.89 16 14 C -0.30 -8.19 9.68 -14.94 -0.14 -8.34 16 15 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 16 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 17 N -0.90 -24.10 13.05 55.50 0.72 -23.37 16 18 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 C -0.13 -1.50 5.18 -90.62 -0.47 -1.97 16 23 C -0.18 -1.79 10.18 -26.74 -0.27 -2.06 16 24 C -0.18 -1.66 9.85 -26.74 -0.26 -1.92 16 25 C -0.14 -1.30 6.32 -25.16 -0.16 -1.46 16 26 C 0.04 0.41 7.63 37.94 0.29 0.70 16 27 O -0.37 -4.72 11.65 -35.23 -0.41 -5.13 16 28 C 0.06 0.59 6.72 37.93 0.25 0.85 16 29 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.40 3.82 6.78 -40.82 -0.28 3.54 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.80 7.71 -51.93 -0.40 0.40 16 35 H 0.35 5.29 6.49 -39.29 -0.25 5.03 16 36 H 0.09 1.41 7.99 -51.93 -0.42 1.00 16 37 H 0.04 0.60 8.09 -51.93 -0.42 0.18 16 38 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 39 H 0.27 6.87 8.31 -40.82 -0.34 6.54 16 40 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.09 0.89 8.07 -51.93 -0.42 0.47 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.09 0.77 7.89 -51.92 -0.41 0.36 16 45 H 0.08 0.56 7.73 -51.93 -0.40 0.16 16 46 H 0.10 1.11 6.52 -51.93 -0.34 0.77 16 47 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.10 1.14 7.59 -51.93 -0.39 0.74 16 50 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 LS Contribution 406.88 15.07 6.13 6.13 Total: -1.00 -33.25 406.88 -8.59 -41.84 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: -8.15 Total: 16.86 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -1.06 Total: 3.95 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.25 Total: -55.94 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.24 Total: -28.62 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.25 -8.59 -41.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690173411.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.356 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds