Wall clock time and date at job start Sat Apr 11 2020 05:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 110.45491 * 2 1 4 4 O 1.21281 * 119.99880 * 239.29482 * 3 2 1 5 5 N 1.34776 * 120.00288 * 59.29321 * 3 2 1 6 6 C 1.46501 * 120.00116 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47100 * 180.02562 * 6 5 3 8 8 H 1.09005 * 109.46731 * 294.99564 * 7 6 5 9 9 N 1.46896 * 109.47591 * 54.99914 * 7 6 5 10 10 C 1.46896 * 111.00167 * 205.30972 * 9 7 6 11 11 C 1.50703 * 109.47356 * 181.89508 * 10 9 7 12 12 O 1.21300 * 119.99617 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00430 * 179.97438 * 11 10 9 14 14 C 1.37095 * 120.00170 * 179.97438 * 13 11 10 15 15 H 1.08002 * 119.99948 * 0.02562 * 14 13 11 16 16 C 1.38946 * 120.00097 * 180.02562 * 14 13 11 17 17 N 1.31420 * 119.99932 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00337 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47288 * 89.99868 * 18 16 14 20 20 H 1.48503 * 109.47423 * 209.99937 * 18 16 14 21 21 H 1.48502 * 109.47017 * 329.99997 * 18 16 14 22 22 C 1.53008 * 109.47131 * 175.00028 * 7 6 5 23 23 C 1.52993 * 117.49686 * 132.18431 * 22 7 6 24 24 C 1.52992 * 117.49763 * 63.56201 * 22 7 6 25 25 C 1.54502 * 110.51581 * 237.24655 * 2 1 3 26 26 C 1.54485 * 104.06327 * 241.35476 * 25 2 1 27 27 O 1.44424 * 104.80174 * 336.01890 * 26 25 2 28 28 C 1.44433 * 105.27709 * 40.50943 * 27 26 25 29 29 H 1.09002 * 109.47129 * 298.85445 * 1 2 3 30 30 H 1.08996 * 109.46754 * 178.85198 * 1 2 3 31 31 H 1.09004 * 109.46719 * 58.85258 * 1 2 3 32 32 H 0.96993 * 119.99971 * 0.02562 * 5 3 2 33 33 H 1.09004 * 109.47283 * 300.00013 * 6 5 3 34 34 H 1.09000 * 109.47242 * 59.99779 * 6 5 3 35 35 H 1.00905 * 110.99555 * 329.26235 * 9 7 6 36 36 H 1.09004 * 109.46744 * 301.88980 * 10 9 7 37 37 H 1.08999 * 109.47572 * 61.89059 * 10 9 7 38 38 H 0.97003 * 119.99311 * 0.02562 * 13 11 10 39 39 H 0.96998 * 119.99595 * 179.97438 * 17 16 14 40 40 H 1.08996 * 115.54621 * 277.89138 * 22 7 6 41 41 H 1.08995 * 117.50509 * 0.02562 * 23 22 7 42 42 H 1.09002 * 117.49757 * 145.02124 * 23 22 7 43 43 H 1.09000 * 117.50196 * 214.97709 * 24 22 7 44 44 H 1.09009 * 117.50238 * 0.02562 * 24 22 7 45 45 H 1.08998 * 110.51033 * 359.97438 * 25 2 1 46 46 H 1.08998 * 110.51618 * 122.71184 * 25 2 1 47 47 H 1.08993 * 110.37510 * 217.18861 * 26 25 2 48 48 H 1.09003 * 110.46794 * 94.89778 * 26 25 2 49 49 H 1.08994 * 110.37277 * 200.65315 * 28 27 26 50 50 H 1.09004 * 110.36586 * 78.31774 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4120 0.0000 4 8 2.7711 1.7927 -0.9031 5 7 1.7338 2.2517 1.0035 6 6 2.2453 3.6245 1.0032 7 6 1.7341 4.3596 2.2438 8 1 0.6497 4.4559 2.1878 9 7 2.0967 3.5997 3.4475 10 6 1.1734 3.8911 4.5522 11 6 1.6036 3.1311 5.7803 12 8 2.5829 2.4164 5.7392 13 7 0.9003 3.2453 6.9243 14 6 1.2914 2.5535 8.0414 15 1 2.1633 1.9172 8.0048 16 6 0.5660 2.6708 9.2207 17 7 -0.4952 3.4447 9.2651 18 14 1.0993 1.7287 10.7430 19 1 2.0439 2.5586 11.5331 20 1 -0.0919 1.4107 11.5709 21 1 1.7697 0.4679 10.3353 22 6 2.3670 5.7511 2.3092 23 6 1.4382 6.9378 2.5732 24 6 2.0377 6.7306 1.1810 25 6 2.0715 -0.7829 -1.2170 26 6 2.8759 -1.9429 -0.5894 27 8 3.2399 -1.4703 0.7259 28 6 2.0713 -0.7794 1.2190 29 1 -0.3633 0.4959 0.9001 30 1 -0.3633 -1.0274 -0.0206 31 1 -0.3633 0.5316 -0.8796 32 1 1.1627 1.9472 1.7259 33 1 3.3352 3.6062 1.0156 34 1 1.9008 4.1405 0.1070 35 1 2.1284 2.6098 3.2543 36 1 1.1860 4.9604 4.7637 37 1 0.1645 3.5880 4.2721 38 1 0.1170 3.8165 6.9570 39 1 -1.0018 3.5263 10.0883 40 1 3.3697 5.7919 2.7345 41 1 0.3764 6.7274 2.7008 42 1 1.8298 7.7598 3.1726 43 1 2.8236 7.4162 0.8643 44 1 1.3698 6.3839 0.3923 45 1 1.2492 -1.1704 -1.8184 46 1 2.7221 -0.1495 -1.8200 47 1 3.7690 -2.1482 -1.1794 48 1 2.2582 -2.8378 -0.5135 49 1 2.3464 -0.0911 2.0180 50 1 1.3286 -1.4948 1.5722 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690173411.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:49 Heat of formation + Delta-G solvation = -117.540712 kcal Electronic energy + Delta-G solvation = -30297.834495 eV Core-core repulsion = 26131.660856 eV Total energy + Delta-G solvation = -4166.173639 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.81515 -40.37057 -39.65500 -38.93472 -36.48710 -35.94881 -35.05822 -34.53592 -33.23596 -31.11508 -30.17578 -27.80905 -27.37870 -25.81136 -24.94406 -24.03845 -23.23952 -22.64029 -21.29598 -21.11798 -20.42904 -19.88743 -18.56495 -17.82970 -17.40630 -17.07479 -16.89327 -16.83793 -16.51752 -16.37316 -16.08138 -15.87645 -15.79826 -15.30664 -15.14011 -14.96431 -14.51401 -14.11160 -14.04914 -13.79339 -13.65908 -13.49508 -13.29753 -13.17085 -12.94404 -12.76524 -12.66837 -12.47171 -12.40412 -12.38111 -12.28823 -12.11644 -12.05116 -11.67532 -11.49690 -11.20460 -11.15853 -10.87702 -10.63332 -10.32518 -10.23243 -9.99696 -9.40135 -8.45678 -5.93792 1.38382 1.42831 1.47500 1.54829 1.98307 2.07089 2.29417 2.76830 2.95119 2.96049 3.22076 3.27550 3.42659 3.52409 3.76743 3.84226 3.93553 3.98279 4.09115 4.15179 4.17909 4.25981 4.27375 4.33441 4.44878 4.49213 4.54791 4.57918 4.61256 4.66012 4.71033 4.79204 4.83305 4.84623 4.92734 4.93187 5.07039 5.11709 5.18201 5.30803 5.30850 5.33224 5.42675 5.75548 5.87211 6.08659 6.32028 6.32754 6.61726 7.06666 7.14525 7.58193 8.13863 8.71547 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008959 B = 0.003077 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.722589 B = 9098.648344 C =11552.208623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 C 0.528 3.472 4 O -0.573 6.573 5 N -0.721 5.721 6 C 0.127 3.873 7 C 0.120 3.880 8 H 0.070 0.930 9 N -0.676 5.676 10 C 0.068 3.932 11 C 0.438 3.562 12 O -0.623 6.623 13 N -0.571 5.571 14 C -0.332 4.332 15 H 0.077 0.923 16 C -0.010 4.010 17 N -0.919 5.919 18 Si 0.989 3.011 19 H -0.274 1.274 20 H -0.270 1.270 21 H -0.273 1.273 22 C -0.155 4.155 23 C -0.176 4.176 24 C -0.164 4.164 25 C -0.140 4.140 26 C 0.040 3.960 27 O -0.403 6.403 28 C 0.052 3.948 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.406 0.594 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.343 0.657 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.111 0.889 46 H 0.074 0.926 47 H 0.095 0.905 48 H 0.085 0.915 49 H 0.081 0.919 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.812 -1.678 -20.862 21.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 C 0.315 3.685 4 O -0.452 6.452 5 N -0.374 5.374 6 C 0.004 3.996 7 C 0.010 3.990 8 H 0.088 0.912 9 N -0.311 5.311 10 C -0.065 4.065 11 C 0.225 3.775 12 O -0.509 6.509 13 N -0.209 5.209 14 C -0.462 4.462 15 H 0.095 0.905 16 C -0.210 4.210 17 N -0.560 5.560 18 Si 0.813 3.187 19 H -0.199 1.199 20 H -0.195 1.195 21 H -0.198 1.198 22 C -0.174 4.174 23 C -0.213 4.213 24 C -0.201 4.201 25 C -0.178 4.178 26 C -0.036 4.036 27 O -0.323 6.323 28 C -0.025 4.025 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.242 0.758 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.164 0.836 36 H 0.121 0.879 37 H 0.092 0.908 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.120 0.880 42 H 0.113 0.887 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.129 0.871 46 H 0.093 0.907 47 H 0.114 0.886 48 H 0.104 0.896 49 H 0.099 0.901 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.120 -1.404 -21.053 21.329 hybrid contribution -0.929 -0.462 1.095 1.508 sum -4.049 -1.866 -19.958 20.450 Atomic orbital electron populations 1.21858 0.88666 1.04931 1.03524 1.22222 0.99773 0.91354 0.98294 1.20670 0.79231 0.87691 0.80929 1.90649 1.38690 1.78118 1.37726 1.45974 1.52449 1.12978 1.25961 1.21447 0.99185 0.81027 0.97985 1.21264 0.98159 0.92302 0.87274 0.91178 1.59914 1.52903 1.12766 1.05542 1.21581 0.94757 1.00952 0.89164 1.20876 0.85094 0.85781 0.85732 1.90516 1.30100 1.44825 1.85483 1.41902 1.27383 1.42387 1.09190 1.19636 1.12177 1.24947 0.89430 0.90464 1.25971 0.95567 0.98049 1.01452 1.69665 1.17824 1.38790 1.29710 0.84985 0.77947 0.78352 0.77426 1.19919 1.19474 1.19784 1.22127 1.00379 0.89640 1.05269 1.23073 0.99181 0.99478 0.99585 1.23017 1.03668 1.01605 0.91811 1.23053 1.01413 0.96653 0.96641 1.23655 1.00418 0.96730 0.82816 1.89160 1.36327 1.73977 1.32791 1.23679 0.88498 0.95502 0.94821 0.90980 0.88835 0.91097 0.75760 0.92461 0.89557 0.83598 0.87904 0.90838 0.76945 0.91328 0.88748 0.88024 0.88715 0.88031 0.87712 0.87069 0.90704 0.88647 0.89650 0.90095 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.17 71.98 0.59 -0.90 16 2 C -0.11 -2.04 0.89 -51.91 -0.05 -2.09 16 3 C 0.53 12.82 6.48 87.66 0.57 13.39 16 4 O -0.57 -18.21 15.30 -3.03 -0.05 -18.26 16 5 N -0.72 -15.23 4.64 -463.06 -2.15 -17.38 16 6 C 0.13 2.81 5.13 86.38 0.44 3.25 16 7 C 0.12 2.57 2.40 44.92 0.11 2.68 16 8 H 0.07 1.27 7.61 -2.38 -0.02 1.25 16 9 N -0.68 -19.82 5.89 -495.57 -2.92 -22.74 16 10 C 0.07 2.13 5.95 85.56 0.51 2.64 16 11 C 0.44 19.99 7.82 87.66 0.69 20.68 16 12 O -0.62 -33.78 15.82 -3.09 -0.05 -33.83 16 13 N -0.57 -28.32 5.29 -306.98 -1.62 -29.94 16 14 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 15 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 16 C -0.01 -0.55 5.50 84.92 0.47 -0.08 16 17 N -0.92 -48.50 13.05 21.66 0.28 -48.21 16 18 Si 0.99 42.39 29.55 68.60 2.03 44.42 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 C -0.15 -3.30 5.18 -10.80 -0.06 -3.35 16 23 C -0.18 -3.17 10.18 30.59 0.31 -2.86 16 24 C -0.16 -2.66 9.85 30.59 0.30 -2.36 16 25 C -0.14 -2.40 6.32 31.61 0.20 -2.20 16 26 C 0.04 0.70 7.63 72.49 0.55 1.26 16 27 O -0.40 -10.43 11.65 -148.98 -1.74 -12.17 16 28 C 0.05 1.08 6.72 72.48 0.49 1.56 16 29 H 0.07 0.73 7.65 -2.39 -0.02 0.71 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.41 7.35 6.78 -92.71 -0.63 6.73 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.09 1.74 7.71 -2.39 -0.02 1.72 16 35 H 0.34 10.43 6.49 -89.69 -0.58 9.85 16 36 H 0.10 3.03 7.99 -2.39 -0.02 3.02 16 37 H 0.07 1.89 8.09 -2.39 -0.02 1.87 16 38 H 0.40 18.56 7.90 -92.71 -0.73 17.83 16 39 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 40 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.10 1.65 8.07 -2.39 -0.02 1.63 16 42 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.10 1.45 7.89 -2.38 -0.02 1.43 16 45 H 0.11 1.23 7.73 -2.39 -0.02 1.22 16 46 H 0.07 1.69 6.52 -2.39 -0.02 1.67 16 47 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.08 1.91 7.59 -2.39 -0.02 1.89 16 50 H 0.10 1.53 7.87 -2.39 -0.02 1.52 16 Total: -1.00 -73.95 406.88 -1.25 -75.20 By element: Atomic # 1 Polarization: 49.99 SS G_CDS: -0.97 Total: 49.02 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 5.93 Total: 13.90 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -6.41 Total: -118.28 kcal Atomic # 8 Polarization: -62.43 SS G_CDS: -1.83 Total: -64.26 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -73.95 -1.25 -75.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690173411.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.345 kcal (2) G-P(sol) polarization free energy of solvation -73.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds