Wall clock time and date at job start Sat Apr 11 2020 05:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 110.45630 * 2 1 4 4 O 1.21281 * 119.99932 * 239.29493 * 3 2 1 5 5 N 1.34778 * 120.00138 * 59.29701 * 3 2 1 6 6 C 1.46497 * 119.99816 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.46867 * 180.02562 * 6 5 3 8 8 H 1.09001 * 112.84985 * 316.19864 * 7 6 5 9 9 C 1.53784 * 113.61668 * 87.50626 * 7 6 5 10 10 C 1.53775 * 87.08069 * 89.11586 * 9 7 6 11 11 H 1.09006 * 113.69322 * 270.87330 * 10 9 7 12 12 N 1.46896 * 113.61350 * 139.98469 * 10 9 7 13 13 C 1.46896 * 111.00112 * 107.50162 * 12 10 9 14 14 C 1.50701 * 109.47284 * 179.97438 * 13 12 10 15 15 O 1.21293 * 120.00143 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00197 * 179.97438 * 14 13 12 17 17 C 1.37101 * 120.00072 * 179.97438 * 16 14 13 18 18 H 1.08004 * 120.00066 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99964 * 180.02562 * 17 16 14 20 20 N 1.31406 * 119.99976 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99716 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47040 * 60.00079 * 21 19 17 23 23 H 1.48498 * 109.46485 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46860 * 299.99664 * 21 19 17 25 25 C 1.53783 * 87.08550 * 25.43250 * 10 9 7 26 26 C 1.54505 * 110.51528 * 237.39461 * 2 1 3 27 27 C 1.54479 * 104.06367 * 241.35718 * 26 2 1 28 28 O 1.44426 * 104.80370 * 23.97571 * 27 26 2 29 29 C 1.44431 * 105.27392 * 319.48866 * 28 27 26 30 30 H 1.09002 * 109.47153 * 182.60539 * 1 2 3 31 31 H 1.09001 * 109.46832 * 62.60730 * 1 2 3 32 32 H 1.09004 * 109.47261 * 302.60712 * 1 2 3 33 33 H 0.96997 * 119.99914 * 0.02562 * 5 3 2 34 34 H 1.08998 * 109.47495 * 299.99933 * 6 5 3 35 35 H 1.09006 * 109.47121 * 60.00438 * 6 5 3 36 36 H 1.09000 * 113.61217 * 203.66597 * 9 7 6 37 37 H 1.08996 * 113.60956 * 334.56504 * 9 7 6 38 38 H 1.00904 * 111.00333 * 231.45136 * 12 10 9 39 39 H 1.08996 * 109.47283 * 299.99452 * 13 12 10 40 40 H 1.09002 * 109.47710 * 60.00058 * 13 12 10 41 41 H 0.96999 * 120.00259 * 0.02562 * 16 14 13 42 42 H 0.97000 * 119.99729 * 179.97438 * 20 19 17 43 43 H 1.08991 * 113.61956 * 220.01940 * 25 10 9 44 44 H 1.09005 * 113.61176 * 89.11246 * 25 10 9 45 45 H 1.09000 * 110.51036 * 359.97438 * 26 2 1 46 46 H 1.08996 * 110.51306 * 122.70958 * 26 2 1 47 47 H 1.08999 * 110.37286 * 142.80651 * 27 26 2 48 48 H 1.09006 * 110.37244 * 265.14475 * 27 26 2 49 49 H 1.08998 * 110.37072 * 281.67694 * 29 28 27 50 50 H 1.08998 * 110.36966 * 159.34411 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4120 0.0000 4 8 2.7711 1.7927 -0.9031 5 7 1.7338 2.2517 1.0036 6 6 2.2463 3.6241 1.0038 7 6 1.7349 4.3592 2.2444 8 1 0.6787 4.1746 2.4404 9 6 2.6330 4.1811 3.4799 10 6 3.4063 5.4202 2.9990 11 1 4.2281 5.1880 2.3215 12 7 3.8018 6.3256 4.0861 13 6 5.2477 6.2503 4.3342 14 6 5.6151 7.1909 5.4528 15 8 4.7568 7.8582 5.9907 16 7 6.8972 7.2901 5.8562 17 6 7.2316 8.1463 6.8734 18 1 6.4674 8.7410 7.3519 19 6 8.5536 8.2489 7.2889 20 7 9.4834 7.5257 6.7065 21 14 9.0089 9.4150 8.6755 22 1 8.2746 9.0299 9.9073 23 1 10.4707 9.3392 8.9258 24 1 8.6437 10.8031 8.2948 25 6 2.1167 5.8485 2.2790 26 6 2.0714 -0.7798 -1.2190 27 6 2.8757 -1.9414 -0.5945 28 8 2.3070 -2.1186 0.7212 29 6 2.0713 -0.7827 1.2169 30 1 -0.3633 -1.0266 0.0467 31 1 -0.3633 0.4728 -0.9125 32 1 -0.3634 0.5538 0.8657 33 1 1.1628 1.9471 1.7260 34 1 3.3361 3.6051 1.0167 35 1 1.9025 4.1405 0.1075 36 1 2.1107 4.3319 4.4247 37 1 3.2226 3.2646 3.4626 38 1 3.5178 7.2735 3.8887 39 1 5.5158 5.2313 4.6132 40 1 5.7868 6.5333 3.4302 41 1 7.5836 6.7563 5.4263 42 1 10.4063 7.5977 6.9963 43 1 2.2895 6.2780 1.2923 44 1 1.4533 6.4551 2.8955 45 1 1.2491 -1.1657 -1.8215 46 1 2.7220 -0.1447 -1.8203 47 1 2.7535 -2.8487 -1.1860 48 1 3.9302 -1.6756 -0.5193 49 1 3.0023 -0.3392 1.5698 50 1 1.3310 -0.7999 2.0168 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691175029.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:03 Heat of formation + Delta-G solvation = -103.408746 kcal Electronic energy + Delta-G solvation = -28962.445048 eV Core-core repulsion = 24796.884218 eV Total energy + Delta-G solvation = -4165.560831 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.13718 -39.76125 -38.66979 -38.04348 -35.18092 -34.21954 -33.92809 -33.14772 -31.20282 -30.30765 -28.10784 -27.08924 -26.32065 -25.78197 -24.19322 -23.42076 -22.68348 -22.31378 -20.09639 -19.35958 -18.81598 -17.88108 -17.71702 -16.92881 -16.58500 -16.10626 -15.87898 -15.72666 -15.32572 -15.23827 -14.99626 -14.75509 -14.35458 -14.22900 -13.92419 -13.83859 -13.51046 -13.35902 -13.01772 -12.86484 -12.77753 -12.49099 -12.43622 -12.22920 -11.75491 -11.73244 -11.60626 -11.53394 -11.51859 -11.27235 -11.04145 -10.99844 -10.60532 -10.44375 -10.38611 -10.23358 -10.20734 -10.07566 -9.49941 -9.44788 -8.44276 -8.07307 -7.95783 -6.41368 -3.82331 2.19671 2.68196 3.20235 3.25863 3.30265 3.48540 3.81274 3.91235 4.11100 4.15863 4.27076 4.29481 4.34674 4.42842 4.49801 4.59639 4.69389 4.71106 4.73312 4.99447 5.06558 5.09864 5.18502 5.19281 5.23994 5.25519 5.30103 5.32266 5.42521 5.46229 5.51263 5.58092 5.59718 5.69899 5.73382 5.81488 5.91912 5.93115 6.01175 6.16887 6.18806 6.25642 6.32763 7.06426 7.28015 7.55137 7.66707 7.79034 8.06386 8.61526 9.17923 9.54615 10.06074 10.76286 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018782 B = 0.001698 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.449048 B =16484.735351 C =17348.840179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 C 0.526 3.474 4 O -0.534 6.534 5 N -0.723 5.723 6 C 0.136 3.864 7 C -0.128 4.128 8 H 0.085 0.915 9 C -0.121 4.121 10 C 0.057 3.943 11 H 0.071 0.929 12 N -0.656 5.656 13 C 0.050 3.950 14 C 0.440 3.560 15 O -0.584 6.584 16 N -0.564 5.564 17 C -0.300 4.300 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C -0.131 4.131 26 C -0.144 4.144 27 C 0.044 3.956 28 O -0.369 6.369 29 C 0.059 3.941 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.402 0.598 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.350 0.650 39 H 0.085 0.915 40 H 0.043 0.957 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.101 0.899 47 H 0.095 0.905 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.378 -17.439 -16.274 29.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.121 4.121 3 C 0.311 3.689 4 O -0.411 6.411 5 N -0.374 5.374 6 C 0.012 3.988 7 C -0.147 4.147 8 H 0.103 0.897 9 C -0.159 4.159 10 C -0.053 4.053 11 H 0.089 0.911 12 N -0.289 5.289 13 C -0.083 4.083 14 C 0.226 3.774 15 O -0.469 6.469 16 N -0.200 5.200 17 C -0.430 4.430 18 H 0.120 0.880 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.169 4.169 26 C -0.182 4.182 27 C -0.033 4.033 28 O -0.288 6.288 29 C -0.018 4.018 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.236 0.764 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.171 0.829 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.114 0.886 45 H 0.101 0.899 46 H 0.120 0.880 47 H 0.113 0.887 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.399 -17.333 -15.911 29.263 hybrid contribution 0.961 0.794 -0.085 1.250 sum -16.438 -16.539 -15.996 28.278 Atomic orbital electron populations 1.21836 0.91137 1.03447 1.02761 1.22191 0.98446 0.92981 0.98467 1.20221 0.80200 0.86760 0.81696 1.90699 1.37166 1.77183 1.36033 1.45971 1.52617 1.12978 1.25864 1.21238 0.99273 0.80708 0.97536 1.22437 1.00226 0.96830 0.95208 0.89658 1.23139 0.97522 0.97822 0.97422 1.23093 0.95425 0.94969 0.91837 0.91129 1.60239 1.14034 1.12749 1.41838 1.21733 0.88778 1.00469 0.97343 1.19830 0.83529 0.86907 0.87157 1.90516 1.48686 1.48459 1.59207 1.41867 1.06704 1.38646 1.32804 1.19658 0.93603 1.18625 1.11104 0.87975 1.25271 0.95388 0.98231 0.99081 1.69604 1.01852 1.40542 1.42313 0.85908 0.77151 0.80255 0.80844 1.19881 1.20979 1.19926 1.23196 0.97820 0.95065 1.00844 1.23054 1.01241 0.96977 0.96890 1.23486 0.97218 0.98846 0.83761 1.89146 1.83050 1.25148 1.31415 1.23460 1.00627 0.82861 0.94890 0.90711 0.91645 0.91812 0.76383 0.90981 0.91143 0.88749 0.91779 0.82942 0.89714 0.93908 0.77460 0.91813 0.91272 0.88618 0.89940 0.88031 0.88667 0.91886 0.91654 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.64 8.20 37.16 0.30 -0.34 16 2 C -0.12 -0.80 0.89 -154.09 -0.14 -0.93 16 3 C 0.53 4.76 6.41 -10.98 -0.07 4.69 16 4 O -0.53 -6.95 15.28 5.56 0.08 -6.86 16 5 N -0.72 -5.15 5.42 -60.29 -0.33 -5.48 16 6 C 0.14 1.12 5.35 -4.04 -0.02 1.09 16 7 C -0.13 -0.98 3.94 -89.80 -0.35 -1.33 16 8 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 9 C -0.12 -1.20 7.41 -25.92 -0.19 -1.39 16 10 C 0.06 0.66 3.79 -66.90 -0.25 0.41 16 11 H 0.07 0.82 7.44 -51.93 -0.39 0.43 16 12 N -0.66 -10.32 6.18 -107.14 -0.66 -10.98 16 13 C 0.05 0.88 6.01 -4.98 -0.03 0.85 16 14 C 0.44 10.46 7.82 -10.99 -0.09 10.37 16 15 O -0.58 -15.91 15.78 5.55 0.09 -15.82 16 16 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 17 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 18 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.69 13.05 55.50 0.72 -23.96 16 21 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 25 C -0.13 -1.20 7.24 -25.92 -0.19 -1.38 16 26 C -0.14 -1.02 6.32 -25.17 -0.16 -1.18 16 27 C 0.04 0.31 7.63 37.93 0.29 0.60 16 28 O -0.37 -3.22 11.65 -35.23 -0.41 -3.63 16 29 C 0.06 0.40 6.70 37.93 0.25 0.66 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.22 7.54 -51.93 -0.39 -0.18 16 33 H 0.40 1.91 7.88 -40.82 -0.32 1.58 16 34 H 0.07 0.71 7.39 -51.93 -0.38 0.32 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 38 H 0.35 5.69 8.25 -39.29 -0.32 5.36 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.04 0.69 8.13 -51.93 -0.42 0.27 16 41 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 42 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 44 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.08 0.47 7.73 -51.93 -0.40 0.07 16 46 H 0.10 0.89 6.50 -51.93 -0.34 0.55 16 47 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.48 7.86 -51.93 -0.41 0.07 16 50 H 0.10 0.49 7.87 -51.93 -0.41 0.08 16 LS Contribution 405.88 15.07 6.12 6.12 Total: -1.00 -33.86 405.88 -8.62 -42.47 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -8.27 Total: 12.46 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -0.88 Total: 4.03 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.32 Total: -54.90 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.24 Total: -26.31 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.86 -8.62 -42.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691175029.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.935 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds