Wall clock time and date at job start Sat Apr 11 2020 05:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 110.45630 * 2 1 4 4 O 1.21281 * 119.99932 * 239.29493 * 3 2 1 5 5 N 1.34778 * 120.00138 * 59.29701 * 3 2 1 6 6 C 1.46497 * 119.99816 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.46867 * 180.02562 * 6 5 3 8 8 H 1.09001 * 112.84985 * 316.19864 * 7 6 5 9 9 C 1.53784 * 113.61668 * 87.50626 * 7 6 5 10 10 C 1.53775 * 87.08069 * 89.11586 * 9 7 6 11 11 H 1.09006 * 113.69322 * 270.87330 * 10 9 7 12 12 N 1.46896 * 113.61350 * 139.98469 * 10 9 7 13 13 C 1.46896 * 111.00112 * 107.50162 * 12 10 9 14 14 C 1.50701 * 109.47284 * 179.97438 * 13 12 10 15 15 O 1.21293 * 120.00143 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00197 * 179.97438 * 14 13 12 17 17 C 1.37101 * 120.00072 * 179.97438 * 16 14 13 18 18 H 1.08004 * 120.00066 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99964 * 180.02562 * 17 16 14 20 20 N 1.31406 * 119.99976 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99716 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47040 * 60.00079 * 21 19 17 23 23 H 1.48498 * 109.46485 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46860 * 299.99664 * 21 19 17 25 25 C 1.53783 * 87.08550 * 25.43250 * 10 9 7 26 26 C 1.54505 * 110.51528 * 237.39461 * 2 1 3 27 27 C 1.54479 * 104.06367 * 241.35718 * 26 2 1 28 28 O 1.44426 * 104.80370 * 23.97571 * 27 26 2 29 29 C 1.44431 * 105.27392 * 319.48866 * 28 27 26 30 30 H 1.09002 * 109.47153 * 182.60539 * 1 2 3 31 31 H 1.09001 * 109.46832 * 62.60730 * 1 2 3 32 32 H 1.09004 * 109.47261 * 302.60712 * 1 2 3 33 33 H 0.96997 * 119.99914 * 0.02562 * 5 3 2 34 34 H 1.08998 * 109.47495 * 299.99933 * 6 5 3 35 35 H 1.09006 * 109.47121 * 60.00438 * 6 5 3 36 36 H 1.09000 * 113.61217 * 203.66597 * 9 7 6 37 37 H 1.08996 * 113.60956 * 334.56504 * 9 7 6 38 38 H 1.00904 * 111.00333 * 231.45136 * 12 10 9 39 39 H 1.08996 * 109.47283 * 299.99452 * 13 12 10 40 40 H 1.09002 * 109.47710 * 60.00058 * 13 12 10 41 41 H 0.96999 * 120.00259 * 0.02562 * 16 14 13 42 42 H 0.97000 * 119.99729 * 179.97438 * 20 19 17 43 43 H 1.08991 * 113.61956 * 220.01940 * 25 10 9 44 44 H 1.09005 * 113.61176 * 89.11246 * 25 10 9 45 45 H 1.09000 * 110.51036 * 359.97438 * 26 2 1 46 46 H 1.08996 * 110.51306 * 122.70958 * 26 2 1 47 47 H 1.08999 * 110.37286 * 142.80651 * 27 26 2 48 48 H 1.09006 * 110.37244 * 265.14475 * 27 26 2 49 49 H 1.08998 * 110.37072 * 281.67694 * 29 28 27 50 50 H 1.08998 * 110.36966 * 159.34411 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4120 0.0000 4 8 2.7711 1.7927 -0.9031 5 7 1.7338 2.2517 1.0036 6 6 2.2463 3.6241 1.0038 7 6 1.7349 4.3592 2.2444 8 1 0.6787 4.1746 2.4404 9 6 2.6330 4.1811 3.4799 10 6 3.4063 5.4202 2.9990 11 1 4.2281 5.1880 2.3215 12 7 3.8018 6.3256 4.0861 13 6 5.2477 6.2503 4.3342 14 6 5.6151 7.1909 5.4528 15 8 4.7568 7.8582 5.9907 16 7 6.8972 7.2901 5.8562 17 6 7.2316 8.1463 6.8734 18 1 6.4674 8.7410 7.3519 19 6 8.5536 8.2489 7.2889 20 7 9.4834 7.5257 6.7065 21 14 9.0089 9.4150 8.6755 22 1 8.2746 9.0299 9.9073 23 1 10.4707 9.3392 8.9258 24 1 8.6437 10.8031 8.2948 25 6 2.1167 5.8485 2.2790 26 6 2.0714 -0.7798 -1.2190 27 6 2.8757 -1.9414 -0.5945 28 8 2.3070 -2.1186 0.7212 29 6 2.0713 -0.7827 1.2169 30 1 -0.3633 -1.0266 0.0467 31 1 -0.3633 0.4728 -0.9125 32 1 -0.3634 0.5538 0.8657 33 1 1.1628 1.9471 1.7260 34 1 3.3361 3.6051 1.0167 35 1 1.9025 4.1405 0.1075 36 1 2.1107 4.3319 4.4247 37 1 3.2226 3.2646 3.4626 38 1 3.5178 7.2735 3.8887 39 1 5.5158 5.2313 4.6132 40 1 5.7868 6.5333 3.4302 41 1 7.5836 6.7563 5.4263 42 1 10.4063 7.5977 6.9963 43 1 2.2895 6.2780 1.2923 44 1 1.4533 6.4551 2.8955 45 1 1.2491 -1.1657 -1.8215 46 1 2.7220 -0.1447 -1.8203 47 1 2.7535 -2.8487 -1.1860 48 1 3.9302 -1.6756 -0.5193 49 1 3.0023 -0.3392 1.5698 50 1 1.3310 -0.7999 2.0168 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691175029.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:02 Heat of formation + Delta-G solvation = -130.010961 kcal Electronic energy + Delta-G solvation = -28963.598607 eV Core-core repulsion = 24796.884218 eV Total energy + Delta-G solvation = -4166.714389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.77999 -40.64563 -39.94457 -39.28769 -36.25731 -35.81951 -34.83295 -34.21325 -33.25064 -30.86445 -29.15030 -27.77343 -27.45050 -26.63282 -25.82675 -24.03550 -23.50350 -23.04681 -21.15499 -20.77018 -19.96100 -19.59031 -18.37289 -17.96732 -17.44061 -17.06221 -16.86480 -16.65383 -16.44630 -16.33887 -16.02177 -15.90054 -15.68316 -15.51405 -15.02473 -14.80829 -14.45289 -14.23306 -14.10543 -13.74730 -13.53330 -13.48537 -13.24533 -13.17850 -13.10263 -13.05506 -12.81718 -12.53587 -12.44172 -12.28725 -12.13805 -12.05837 -11.86210 -11.78476 -11.51819 -11.41055 -11.18674 -10.82593 -10.79585 -10.33819 -10.14283 -10.03500 -9.32037 -8.47721 -5.96961 1.39281 1.41038 1.50571 1.52353 2.03343 2.05379 2.28474 2.95021 2.96282 3.19291 3.27895 3.49946 3.55433 3.64769 3.74424 3.76857 3.80220 3.92595 3.98251 4.18598 4.19602 4.27725 4.32514 4.43996 4.51388 4.56232 4.58050 4.64638 4.70131 4.74023 4.77973 4.81825 4.87467 4.95550 4.97112 5.01057 5.04681 5.14658 5.22816 5.25604 5.36907 5.39990 5.46263 5.70421 5.92209 6.15937 6.42711 6.47214 6.58375 7.10739 7.15201 7.54290 8.09239 8.69430 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018782 B = 0.001698 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.449048 B =16484.735351 C =17348.840179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.112 4.112 3 C 0.524 3.476 4 O -0.580 6.580 5 N -0.710 5.710 6 C 0.139 3.861 7 C -0.104 4.104 8 H 0.109 0.891 9 C -0.118 4.118 10 C 0.045 3.955 11 H 0.073 0.927 12 N -0.668 5.668 13 C 0.065 3.935 14 C 0.437 3.563 15 O -0.622 6.622 16 N -0.574 5.574 17 C -0.336 4.336 18 H 0.080 0.920 19 C -0.014 4.014 20 N -0.921 5.921 21 Si 0.995 3.005 22 H -0.271 1.271 23 H -0.270 1.270 24 H -0.271 1.271 25 C -0.125 4.125 26 C -0.145 4.145 27 C 0.041 3.959 28 O -0.386 6.386 29 C 0.058 3.942 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.416 0.584 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.345 0.655 39 H 0.099 0.901 40 H 0.062 0.938 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.081 0.919 47 H 0.112 0.888 48 H 0.055 0.945 49 H 0.055 0.945 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.663 -18.317 -16.347 30.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.116 4.116 3 C 0.310 3.690 4 O -0.459 6.459 5 N -0.361 5.361 6 C 0.015 3.985 7 C -0.123 4.123 8 H 0.127 0.873 9 C -0.156 4.156 10 C -0.065 4.065 11 H 0.091 0.909 12 N -0.300 5.300 13 C -0.068 4.068 14 C 0.225 3.775 15 O -0.509 6.509 16 N -0.211 5.211 17 C -0.465 4.465 18 H 0.098 0.902 19 C -0.214 4.214 20 N -0.562 5.562 21 Si 0.818 3.182 22 H -0.197 1.197 23 H -0.195 1.195 24 H -0.196 1.196 25 C -0.163 4.163 26 C -0.182 4.182 27 C -0.035 4.035 28 O -0.304 6.304 29 C -0.019 4.019 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.253 0.747 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.164 0.836 39 H 0.117 0.883 40 H 0.080 0.920 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.099 0.901 47 H 0.130 0.870 48 H 0.073 0.927 49 H 0.073 0.927 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.703 -18.243 -15.980 30.626 hybrid contribution 1.350 1.048 -0.096 1.712 sum -17.352 -17.194 -16.075 29.243 Atomic orbital electron populations 1.21854 0.89168 1.04290 1.03539 1.22192 0.99857 0.91246 0.98285 1.20635 0.79450 0.87657 0.81209 1.90684 1.39240 1.78154 1.37847 1.45864 1.52141 1.12379 1.25761 1.21132 0.98375 0.81279 0.97685 1.22250 1.01019 0.95411 0.93595 0.87276 1.23090 0.97633 0.96952 0.97962 1.23336 0.96590 0.95209 0.91339 0.90907 1.60286 1.12447 1.13103 1.44167 1.21578 0.90541 0.99202 0.95485 1.20882 0.82420 0.86648 0.87569 1.90482 1.49564 1.50093 1.60761 1.41952 1.07595 1.38734 1.32788 1.19653 0.93910 1.20123 1.12830 0.90210 1.26082 0.94789 0.99459 1.01078 1.69670 1.02216 1.41146 1.43125 0.84962 0.77394 0.78098 0.77724 1.19656 1.19495 1.19616 1.23168 0.96190 0.96115 1.00862 1.23047 1.01397 0.96719 0.97078 1.23567 0.96748 0.99647 0.83557 1.89127 1.83149 1.26138 1.32031 1.23574 1.00879 0.82113 0.95373 0.89930 0.91864 0.89983 0.74672 0.92627 0.91348 0.89606 0.91561 0.83582 0.88338 0.91985 0.77050 0.91274 0.90389 0.88661 0.88478 0.90087 0.86991 0.92683 0.92686 0.85710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 8.20 71.98 0.59 -0.32 16 2 C -0.11 -1.36 0.89 -51.91 -0.05 -1.41 16 3 C 0.52 8.99 6.41 87.66 0.56 9.56 16 4 O -0.58 -15.18 15.28 -3.03 -0.05 -15.23 16 5 N -0.71 -8.75 5.42 -463.06 -2.51 -11.26 16 6 C 0.14 2.05 5.35 86.38 0.46 2.51 16 7 C -0.10 -1.33 3.94 -10.27 -0.04 -1.37 16 8 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 9 C -0.12 -2.13 7.41 31.12 0.23 -1.89 16 10 C 0.04 0.98 3.79 45.44 0.17 1.15 16 11 H 0.07 1.59 7.44 -2.38 -0.02 1.57 16 12 N -0.67 -20.58 6.18 -492.87 -3.05 -23.63 16 13 C 0.06 2.25 6.01 85.56 0.51 2.76 16 14 C 0.44 21.07 7.82 87.66 0.69 21.75 16 15 O -0.62 -34.69 15.78 -3.07 -0.05 -34.73 16 16 N -0.57 -29.88 5.29 -306.97 -1.62 -31.51 16 17 C -0.34 -19.26 9.68 84.04 0.81 -18.45 16 18 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 19 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 20 N -0.92 -50.20 13.05 21.66 0.28 -49.92 16 21 Si 0.99 43.16 29.55 68.60 2.03 45.19 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 25 C -0.12 -2.05 7.24 31.12 0.23 -1.82 16 26 C -0.14 -1.95 6.32 31.61 0.20 -1.75 16 27 C 0.04 0.55 7.63 72.48 0.55 1.11 16 28 O -0.39 -6.23 11.65 -148.98 -1.74 -7.97 16 29 C 0.06 0.69 6.70 72.48 0.49 1.18 16 30 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.08 0.27 7.54 -2.38 -0.02 0.25 16 33 H 0.42 2.71 7.88 -92.71 -0.73 1.98 16 34 H 0.06 1.04 7.39 -2.39 -0.02 1.02 16 35 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 38 H 0.34 11.13 8.25 -89.69 -0.74 10.39 16 39 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.06 1.94 8.13 -2.39 -0.02 1.92 16 41 H 0.40 19.65 7.90 -92.71 -0.73 18.92 16 42 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 43 H 0.08 1.16 8.10 -2.39 -0.02 1.14 16 44 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 45 H 0.10 0.99 7.73 -2.39 -0.02 0.97 16 46 H 0.08 1.47 6.50 -2.39 -0.02 1.45 16 47 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 49 H 0.05 0.77 7.86 -2.39 -0.02 0.75 16 50 H 0.12 0.86 7.87 -2.39 -0.02 0.84 16 Total: -1.00 -74.50 405.88 -2.06 -76.56 By element: Atomic # 1 Polarization: 41.03 SS G_CDS: -1.23 Total: 39.80 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 5.88 Total: 12.70 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -6.90 Total: -116.32 kcal Atomic # 8 Polarization: -56.10 SS G_CDS: -1.83 Total: -57.93 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -74.50 -2.06 -76.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691175029.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.449 kcal (2) G-P(sol) polarization free energy of solvation -74.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds