Wall clock time and date at job start Sat Apr 11 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.47128 * 2 1 4 4 N 1.29937 * 125.37647 * 89.99902 * 3 2 1 5 5 C 1.36064 * 108.47641 * 179.97438 * 4 3 2 6 6 C 1.47423 * 126.45019 * 179.97438 * 5 4 3 7 7 O 1.21609 * 119.99724 * 175.04764 * 6 5 4 8 8 N 1.34773 * 119.99976 * 355.04983 * 6 5 4 9 9 C 1.46506 * 119.99635 * 2.55647 * 8 6 5 10 10 C 1.46498 * 120.00085 * 182.56310 * 8 6 5 11 11 C 1.52997 * 109.47210 * 89.99745 * 10 8 6 12 12 O 1.42896 * 109.47080 * 65.00200 * 11 10 8 13 13 C 1.42903 * 113.99922 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47425 * 179.97438 * 13 12 11 15 15 N 1.46505 * 109.47160 * 64.99864 * 14 13 12 16 16 C 1.46504 * 120.00039 * 270.00572 * 15 14 13 17 17 C 1.36934 * 119.99963 * 89.99921 * 15 14 13 18 18 H 1.08005 * 119.99822 * 24.64035 * 17 15 14 19 19 C 1.38808 * 120.00120 * 204.63667 * 17 15 14 20 20 N 1.31619 * 120.00145 * 6.96040 * 19 17 15 21 21 Si 1.86802 * 119.99631 * 186.95766 * 19 17 15 22 22 H 1.48498 * 109.47108 * 90.00324 * 21 19 17 23 23 H 1.48507 * 109.46968 * 209.99603 * 21 19 17 24 24 H 1.48492 * 109.47436 * 329.99776 * 21 19 17 25 25 C 1.36092 * 107.10263 * 359.97438 * 5 4 3 26 26 C 1.50707 * 126.52784 * 179.97438 * 25 5 4 27 27 O 1.34048 * 125.37827 * 269.97590 * 3 2 1 28 28 H 1.09006 * 109.46916 * 59.99665 * 1 2 3 29 29 H 1.08997 * 109.47051 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46603 * 300.00244 * 1 2 3 31 31 H 1.08996 * 109.47008 * 240.00339 * 2 1 3 32 32 H 1.08998 * 109.47157 * 120.00130 * 2 1 3 33 33 H 1.08999 * 109.46726 * 83.84989 * 9 8 6 34 34 H 1.09003 * 109.46969 * 203.84599 * 9 8 6 35 35 H 1.08996 * 109.47490 * 323.85018 * 9 8 6 36 36 H 1.09003 * 109.46875 * 210.00132 * 10 8 6 37 37 H 1.09004 * 109.47050 * 329.99290 * 10 8 6 38 38 H 1.09002 * 109.47116 * 185.00156 * 11 10 8 39 39 H 1.09000 * 109.47179 * 304.99771 * 11 10 8 40 40 H 1.08995 * 109.47353 * 299.99857 * 13 12 11 41 41 H 1.09000 * 109.47000 * 60.00094 * 13 12 11 42 42 H 1.08996 * 109.47601 * 185.00096 * 14 13 12 43 43 H 1.09002 * 109.47018 * 305.00385 * 14 13 12 44 44 H 1.08990 * 109.47151 * 95.06000 * 16 15 14 45 45 H 1.08997 * 109.46831 * 215.05927 * 16 15 14 46 46 H 1.09002 * 109.46578 * 335.05896 * 16 15 14 47 47 H 0.96997 * 119.99844 * 180.02562 * 20 19 17 48 48 H 1.08997 * 109.47125 * 179.97438 * 26 25 5 49 49 H 1.09000 * 109.46763 * 299.98214 * 26 25 5 50 50 H 1.08993 * 109.46468 * 59.98004 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2831 2.1301 1.0595 5 6 2.7176 3.3573 0.6639 6 6 3.1116 4.4726 1.5439 7 8 3.5692 5.4925 1.0651 8 7 2.9646 4.3618 2.8790 9 6 2.4659 3.1127 3.4598 10 6 3.3032 5.4905 3.7494 11 6 2.0686 6.3728 3.9440 12 8 1.0653 5.6394 4.6493 13 6 -0.1359 6.3767 4.8850 14 6 -1.1336 5.4979 5.6420 15 7 -0.6015 5.1887 6.9715 16 6 0.2257 3.9959 7.1702 17 6 -0.8771 6.0146 8.0284 18 1 -1.7610 6.6351 8.0126 19 6 -0.0205 6.0544 9.1199 20 7 1.1238 5.4051 9.0826 21 14 -0.4920 7.0294 10.6419 22 1 -1.2427 6.1542 11.5777 23 1 0.7367 7.5293 11.3098 24 1 -1.3444 8.1798 10.2485 25 6 2.7202 3.3615 -0.6970 26 6 3.1252 4.5062 -1.5897 27 8 2.2915 2.1524 -1.0930 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.2925 2.4124 3.5798 34 1 2.0189 3.3173 4.4327 35 1 1.7153 2.6789 2.7992 36 1 3.6382 5.1156 4.7166 37 1 4.1001 6.0764 3.2911 38 1 2.3418 7.2586 4.5176 39 1 1.6811 6.6753 2.9711 40 1 0.0918 7.2623 5.4783 41 1 -0.5692 6.6796 3.9318 42 1 -2.0805 6.0280 5.7439 43 1 -1.2934 4.5715 5.0902 44 1 1.2787 4.2680 7.0987 45 1 0.0253 3.5749 8.1554 46 1 -0.0117 3.2575 6.4043 47 1 1.7221 5.4326 9.8455 48 1 3.0211 4.2078 -2.6329 49 1 2.4846 5.3656 -1.3918 50 1 4.1630 4.7729 -1.3900 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691603629.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:09 Heat of formation + Delta-G solvation = -27.582494 kcal Electronic energy + Delta-G solvation = -30651.896148 eV Core-core repulsion = 26489.623390 eV Total energy + Delta-G solvation = -4162.272758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.64984 -39.65504 -37.43015 -35.70570 -35.28175 -34.75437 -34.34272 -31.87003 -31.47830 -29.99625 -27.98035 -27.42122 -26.17500 -25.67474 -24.64906 -23.49055 -22.89174 -22.26290 -21.11482 -20.25394 -19.40380 -17.49460 -17.21757 -16.74090 -16.32145 -16.08897 -15.63293 -15.36434 -15.11658 -14.91866 -14.72159 -14.47629 -13.80272 -13.77295 -13.56948 -13.47427 -13.27371 -12.95322 -12.84999 -12.82410 -12.62138 -12.27538 -12.19925 -12.08802 -11.85552 -11.58883 -11.49435 -11.33814 -11.25855 -10.90042 -10.78860 -10.72568 -10.49804 -10.39314 -10.01503 -9.93921 -9.85710 -9.75419 -9.00802 -8.85426 -8.46022 -8.40587 -6.60468 -5.61735 -3.09766 0.93287 1.86239 2.24692 3.03227 3.27258 3.41762 3.47802 3.48996 3.64527 4.34488 4.37737 4.51035 4.57121 4.66854 4.75631 4.91125 5.00176 5.22025 5.25948 5.38901 5.41044 5.42439 5.49642 5.52958 5.64521 5.65047 5.67056 5.72914 5.75264 5.81057 5.88412 5.91567 5.95331 6.06412 6.18424 6.27234 6.32864 6.49667 6.62933 6.69582 6.84822 7.00344 7.29939 7.51058 7.56555 7.86722 7.94830 8.03074 8.16939 8.51252 9.35567 9.98356 10.49773 11.41863 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016146 B = 0.002652 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.755269 B =10554.591550 C =11438.934233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.025 4.025 3 C 0.189 3.811 4 N -0.447 5.447 5 C -0.067 4.067 6 C 0.596 3.404 7 O -0.546 6.546 8 N -0.584 5.584 9 C 0.078 3.922 10 C 0.120 3.880 11 C 0.049 3.951 12 O -0.365 6.365 13 C 0.045 3.955 14 C 0.154 3.846 15 N -0.597 5.597 16 C 0.177 3.823 17 C -0.255 4.255 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.904 5.904 21 Si 0.902 3.098 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.034 3.966 26 C -0.065 4.065 27 O -0.198 6.198 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.039 0.961 40 H 0.047 0.953 41 H 0.021 0.979 42 H 0.056 0.944 43 H 0.042 0.958 44 H 0.033 0.967 45 H 0.035 0.965 46 H -0.008 1.008 47 H 0.250 0.750 48 H 0.076 0.924 49 H 0.097 0.903 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.277 -8.947 -22.247 24.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.063 4.063 3 C -0.020 4.020 4 N -0.176 5.176 5 C -0.187 4.187 6 C 0.383 3.617 7 O -0.425 6.425 8 N -0.314 5.314 9 C -0.065 4.065 10 C -0.002 4.002 11 C -0.029 4.029 12 O -0.284 6.284 13 C -0.035 4.035 14 C 0.026 3.974 15 N -0.319 5.319 16 C 0.032 3.968 17 C -0.385 4.385 18 H 0.083 0.917 19 C -0.195 4.195 20 N -0.549 5.549 21 Si 0.732 3.268 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.023 4.023 26 C -0.121 4.121 27 O -0.085 6.085 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.039 0.961 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.054 0.946 46 H 0.010 0.990 47 H 0.060 0.940 48 H 0.095 0.905 49 H 0.116 0.884 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.598 -8.861 -21.637 23.656 hybrid contribution -0.091 1.115 0.257 1.148 sum 3.507 -7.745 -21.380 23.009 Atomic orbital electron populations 1.21806 0.92880 1.03138 1.03193 1.20113 0.97019 0.83885 1.05318 1.26425 1.00220 0.96893 0.78422 1.71026 1.15270 1.02602 1.28735 1.21487 1.10535 0.94551 0.92111 1.16800 0.78344 0.84711 0.81802 1.90765 1.46806 1.29839 1.75119 1.47565 1.63122 1.15728 1.04967 1.22223 0.99767 0.83707 1.00759 1.21622 0.96275 0.87704 0.94629 1.22750 0.89946 0.94797 0.95419 1.87950 1.24928 1.39247 1.76242 1.23437 0.86494 0.96933 0.96612 1.20874 0.93579 0.96256 0.86672 1.43852 1.59769 1.25630 1.02689 1.20694 0.94915 0.85295 0.95881 1.19205 1.03983 1.19376 0.95919 0.91701 1.25083 0.95366 0.99589 0.99451 1.70075 1.09573 1.45375 1.29883 0.86297 0.77148 0.79859 0.83451 1.21589 1.21790 1.20654 1.23672 0.98356 0.85713 0.94517 1.20423 1.03769 0.91243 0.96711 1.84306 1.63814 1.22290 1.38090 0.92241 0.90756 0.91380 0.88919 0.87293 0.93356 0.89821 0.88631 0.88968 0.88846 0.92826 0.94248 0.93507 0.96121 0.92586 0.93957 0.94870 0.94608 0.98955 0.93959 0.90478 0.88423 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.90 37.16 0.37 -0.56 16 2 C -0.03 -0.16 6.56 -27.88 -0.18 -0.35 16 3 C 0.19 2.01 7.56 -13.08 -0.10 1.91 16 4 N -0.45 -5.87 7.85 -7.65 -0.06 -5.93 16 5 C -0.07 -0.95 6.67 -83.02 -0.55 -1.50 16 6 C 0.60 9.44 7.67 -12.52 -0.10 9.34 16 7 O -0.55 -9.23 15.18 5.27 0.08 -9.15 16 8 N -0.58 -9.17 2.84 -182.85 -0.52 -9.69 16 9 C 0.08 1.17 9.35 59.85 0.56 1.73 16 10 C 0.12 1.87 5.80 -4.04 -0.02 1.85 16 11 C 0.05 0.85 6.28 37.16 0.23 1.08 16 12 O -0.36 -7.37 8.84 -35.23 -0.31 -7.68 16 13 C 0.04 0.90 6.28 37.16 0.23 1.13 16 14 C 0.15 3.30 6.11 -4.04 -0.02 3.28 16 15 N -0.60 -15.44 2.89 -181.12 -0.52 -15.96 16 16 C 0.18 4.52 8.60 59.85 0.51 5.04 16 17 C -0.25 -7.13 9.66 -15.06 -0.15 -7.27 16 18 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 19 C 0.00 0.10 5.22 -17.43 -0.09 0.01 16 20 N -0.90 -26.66 10.49 55.49 0.58 -26.08 16 21 Si 0.90 22.15 29.56 -169.99 -5.02 17.12 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.03 0.40 7.44 -35.08 -0.26 0.14 16 26 C -0.07 -0.58 9.14 36.01 0.33 -0.25 16 27 O -0.20 -2.20 10.73 6.52 0.07 -2.13 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.40 7.25 -51.93 -0.38 1.03 16 35 H 0.10 1.44 5.34 -51.93 -0.28 1.16 16 36 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 37 H 0.09 1.36 7.39 -51.93 -0.38 0.97 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 43 H 0.04 0.85 7.86 -51.93 -0.41 0.45 16 44 H 0.03 0.92 7.34 -51.93 -0.38 0.54 16 45 H 0.04 0.98 7.28 -51.93 -0.38 0.60 16 46 H -0.01 -0.19 7.84 -51.93 -0.41 -0.59 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 48 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.10 0.90 8.13 -51.93 -0.42 0.47 16 50 H 0.10 0.89 8.01 -51.93 -0.42 0.48 16 LS Contribution 410.18 15.07 6.18 6.18 Total: -1.00 -33.57 410.18 -7.25 -40.81 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -8.48 Total: -3.07 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: 0.76 Total: 15.57 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.52 Total: -57.66 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.16 Total: -18.95 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.57 -7.25 -40.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691603629.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.229 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds