Wall clock time and date at job start Sat Apr 11 2020 05:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 6 6 C 1.32994 * 119.99576 * 0.02562 * 5 2 1 7 7 C 1.47104 * 119.99331 * 179.97438 * 6 5 2 8 8 O 1.21608 * 120.00650 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99603 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99982 * 179.97438 * 9 7 6 11 11 C 1.52990 * 109.46881 * 179.97438 * 10 9 7 12 12 O 1.42904 * 112.94327 * 53.43466 * 11 10 9 13 13 C 1.53934 * 113.73746 * 281.72478 * 11 10 9 14 14 N 1.47953 * 86.18542 * 221.92486 * 13 11 10 15 15 C 1.46902 * 111.00257 * 137.57946 * 14 13 11 16 16 C 1.50707 * 109.46799 * 70.64017 * 15 14 13 17 17 O 1.21296 * 120.00021 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99977 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99979 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00015 * 0.02562 * 19 18 16 21 21 C 1.38954 * 119.99955 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99644 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99793 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47147 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46986 * 120.00779 * 23 21 19 26 26 H 1.48501 * 109.47179 * 240.00089 * 23 21 19 27 27 C 1.47961 * 90.76344 * 24.68813 * 14 13 11 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 35 35 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 37 37 H 1.08001 * 119.99952 * 180.02562 * 5 2 1 38 38 H 1.07998 * 120.00189 * 359.97438 * 6 5 2 39 39 H 0.97003 * 119.99468 * 359.97438 * 9 7 6 40 40 H 1.08998 * 109.46965 * 299.99826 * 10 9 7 41 41 H 1.09002 * 109.46883 * 59.99667 * 10 9 7 42 42 H 0.96695 * 113.99388 * 309.66857 * 12 11 10 43 43 H 1.09007 * 113.75792 * 336.24335 * 13 11 10 44 44 H 1.09007 * 113.75909 * 107.60493 * 13 11 10 45 45 H 1.08994 * 109.47142 * 190.64040 * 15 14 13 46 46 H 1.08999 * 109.47032 * 310.64448 * 15 14 13 47 47 H 0.97001 * 119.99625 * 0.02562 * 18 16 15 48 48 H 0.97002 * 119.99281 * 179.97438 * 22 21 19 49 49 H 1.08999 * 113.75869 * 220.98962 * 27 14 13 50 50 H 1.09005 * 113.85630 * 89.64142 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7105 -1.2305 6 6 1.1680 -1.2154 -2.1061 7 6 1.6584 -1.9084 -3.3075 8 8 2.8540 -2.0192 -3.5002 9 7 0.7826 -2.4207 -4.1947 10 6 1.2709 -3.1103 -5.3914 11 6 0.0809 -3.5919 -6.2237 12 8 -0.8463 -2.5474 -6.5263 13 6 -0.5795 -4.8710 -5.6784 14 7 -0.6562 -5.3139 -7.0879 15 6 -0.2899 -6.7308 -7.2153 16 6 -1.3758 -7.5862 -6.6149 17 8 -2.3583 -7.0665 -6.1292 18 7 -1.2557 -8.9286 -6.6185 19 6 -2.2432 -9.7066 -6.0719 20 1 -3.1176 -9.2439 -5.6387 21 6 -2.1191 -11.0906 -6.0752 22 7 -1.0548 -11.6536 -6.6018 23 14 -3.4650 -12.1508 -5.3310 24 1 -4.5488 -11.2804 -4.8085 25 1 -4.0156 -13.0550 -6.3724 26 1 -2.9009 -12.9600 -4.2209 27 6 0.4814 -4.4380 -7.4457 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 -1.7489 1.2492 35 1 3.1300 -0.7217 1.2490 36 1 1.6767 -0.2075 2.1393 37 1 3.0942 -0.8095 -1.4012 38 1 0.1062 -1.1167 -1.9352 39 1 -0.1711 -2.3326 -4.0407 40 1 1.8758 -2.4245 -5.9845 41 1 1.8771 -3.9665 -5.0954 42 1 -1.1228 -2.0318 -5.7564 43 1 0.0831 -5.4790 -5.0624 44 1 -1.5528 -4.7007 -5.2180 45 1 -0.1705 -6.9819 -8.2691 46 1 0.6477 -6.9123 -6.6900 47 1 -0.4701 -9.3441 -7.0073 48 1 -0.9681 -12.6197 -6.6038 49 1 0.3559 -3.9219 -8.3975 50 1 1.4552 -4.9179 -7.3475 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699910212.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:32 Heat of formation + Delta-G solvation = -73.422298 kcal Electronic energy + Delta-G solvation = -29040.048953 eV Core-core repulsion = 24875.788432 eV Total energy + Delta-G solvation = -4164.260521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.74635 -39.73986 -38.17314 -37.86662 -35.83614 -34.45078 -33.89265 -32.02837 -31.29582 -30.23228 -27.83400 -27.70101 -27.61757 -26.17034 -25.05934 -23.78748 -22.30490 -20.73305 -19.98870 -19.24250 -18.72554 -18.05988 -17.81613 -16.76941 -16.42591 -15.81812 -15.68285 -15.43855 -15.29765 -15.12434 -14.70643 -14.62787 -14.48650 -14.09643 -13.97500 -13.67484 -13.43883 -13.11160 -13.01268 -12.80631 -12.63382 -12.48073 -12.28714 -12.14347 -12.05637 -11.88653 -11.51285 -11.50581 -11.46142 -11.30010 -11.17250 -11.04777 -10.76932 -10.35611 -10.24297 -10.14263 -9.95237 -9.81377 -9.52679 -9.35155 -8.67026 -8.24620 -7.97743 -6.43104 -3.83876 1.06607 2.84626 3.05770 3.15121 3.25749 3.32891 3.67765 3.87998 3.98948 4.10593 4.20829 4.27406 4.30814 4.49279 4.54215 4.67344 4.83264 4.87018 4.93937 5.10140 5.14944 5.16947 5.22856 5.27964 5.30522 5.40480 5.41513 5.44119 5.48574 5.55073 5.63816 5.67018 5.68595 5.74028 5.77653 5.82597 5.83820 5.96121 6.06949 6.12694 6.14269 6.23793 6.57623 7.11562 7.18304 7.42919 7.54024 7.95710 8.04379 8.59847 9.16592 9.52613 10.04197 10.74724 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012680 B = 0.002002 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.610844 B =13984.254534 C =15314.314523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C -0.139 4.139 4 C -0.140 4.140 5 C -0.049 4.049 6 C -0.223 4.223 7 C 0.548 3.452 8 O -0.546 6.546 9 N -0.725 5.725 10 C 0.101 3.899 11 C 0.088 3.912 12 O -0.521 6.521 13 C 0.000 4.000 14 N -0.440 5.440 15 C 0.007 3.993 16 C 0.444 3.556 17 O -0.579 6.579 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.018 3.982 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.126 0.874 38 H 0.133 0.867 39 H 0.400 0.600 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.371 0.629 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.055 0.945 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.100 0.900 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.848 23.597 10.469 26.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.050 4.050 3 C -0.196 4.196 4 C -0.197 4.197 5 C -0.069 4.069 6 C -0.244 4.244 7 C 0.337 3.663 8 O -0.425 6.425 9 N -0.377 5.377 10 C -0.023 4.023 11 C 0.045 3.955 12 O -0.326 6.326 13 C -0.129 4.129 14 N -0.162 5.162 15 C -0.125 4.125 16 C 0.229 3.771 17 O -0.463 6.463 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.112 4.112 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.144 0.856 38 H 0.151 0.849 39 H 0.234 0.766 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.218 0.782 43 H 0.092 0.908 44 H 0.117 0.883 45 H 0.111 0.889 46 H 0.073 0.927 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.119 0.881 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.522 23.430 9.637 26.427 hybrid contribution 0.120 -1.043 1.025 1.467 sum 7.641 22.387 10.662 25.947 Atomic orbital electron populations 1.22022 0.93874 1.02420 1.02316 1.19807 0.96157 0.95630 0.93381 1.21831 1.01410 0.94101 1.02248 1.21841 1.01422 1.00490 0.95938 1.23741 1.00339 0.90495 0.92312 1.22735 1.01201 1.04489 0.95988 1.18639 0.85963 0.78390 0.83302 1.90793 1.15806 1.59024 1.76845 1.45787 1.09987 1.58437 1.23528 1.22028 0.96631 0.97956 0.85704 1.23054 0.88537 0.87679 0.96222 1.86634 1.62878 1.46640 1.36426 1.24520 1.02155 0.93813 0.92454 1.68473 1.32934 1.02487 1.12352 1.22515 0.97201 0.90426 1.02358 1.19659 0.88788 0.83015 0.85643 1.90521 1.32553 1.72826 1.50373 1.41875 1.21264 1.04222 1.52743 1.19744 1.00740 0.87773 1.34526 0.87887 1.25273 0.97908 0.97207 0.97634 1.69623 1.27823 1.11594 1.45236 0.85797 0.80483 0.79523 0.78520 1.19231 1.20718 1.20767 1.24122 0.94890 0.93567 0.98606 0.92033 0.92073 0.91918 0.91956 0.92193 0.92289 0.92177 0.92179 0.91936 0.85608 0.84929 0.76569 0.90289 0.90109 0.78152 0.90831 0.88260 0.88899 0.92740 0.77487 0.91914 0.88136 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 7.13 37.16 0.26 -0.48 16 2 C -0.05 -0.28 0.99 -155.66 -0.15 -0.44 16 3 C -0.14 -0.69 8.46 37.15 0.31 -0.38 16 4 C -0.14 -0.76 8.46 37.16 0.31 -0.44 16 5 C -0.05 -0.38 8.33 -36.12 -0.30 -0.68 16 6 C -0.22 -1.80 9.00 -37.80 -0.34 -2.14 16 7 C 0.55 6.01 7.76 -12.66 -0.10 5.91 16 8 O -0.55 -8.09 16.22 5.27 0.09 -8.00 16 9 N -0.73 -6.63 5.33 -61.50 -0.33 -6.96 16 10 C 0.10 1.05 5.28 -4.05 -0.02 1.03 16 11 C 0.09 1.02 1.52 -89.69 -0.14 0.89 16 12 O -0.52 -6.15 13.51 -35.23 -0.48 -6.62 16 13 C 0.00 0.00 6.16 -2.77 -0.02 -0.02 16 14 N -0.44 -7.43 5.95 -239.62 -1.43 -8.86 16 15 C 0.01 0.12 5.31 -4.97 -0.03 0.10 16 16 C 0.44 10.57 7.59 -10.98 -0.08 10.49 16 17 O -0.58 -15.77 15.13 5.54 0.08 -15.69 16 18 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 16 19 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 23 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 C 0.02 0.22 7.37 -2.76 -0.02 0.20 16 28 H 0.06 0.29 7.50 -51.93 -0.39 -0.10 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.33 7.50 -51.93 -0.39 -0.06 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.13 1.13 7.49 -52.49 -0.39 0.74 16 38 H 0.13 0.77 5.74 -52.49 -0.30 0.47 16 39 H 0.40 2.65 7.29 -40.82 -0.30 2.35 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 42 H 0.37 2.85 7.61 45.56 0.35 3.20 16 43 H 0.07 1.10 7.67 -51.92 -0.40 0.70 16 44 H 0.10 1.65 8.09 -51.93 -0.42 1.23 16 45 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 46 H 0.05 0.86 7.69 -51.93 -0.40 0.46 16 47 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 49 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 50 H 0.08 0.88 7.75 -51.93 -0.40 0.48 16 LS Contribution 411.04 15.07 6.19 6.19 Total: -1.00 -35.40 411.04 -8.29 -43.70 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -7.52 Total: 12.48 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -0.55 Total: 6.01 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -1.09 Total: -54.15 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.31 Total: -30.31 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.40 -8.29 -43.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699910212.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.727 kcal (2) G-P(sol) polarization free energy of solvation -35.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds