Wall clock time and date at job start Sat Apr 11 2020 05:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 6 6 C 1.32994 * 119.99576 * 0.02562 * 5 2 1 7 7 C 1.47104 * 119.99331 * 179.97438 * 6 5 2 8 8 O 1.21608 * 120.00650 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99603 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99982 * 179.97438 * 9 7 6 11 11 C 1.52990 * 109.46881 * 179.97438 * 10 9 7 12 12 O 1.42904 * 112.94327 * 53.43466 * 11 10 9 13 13 C 1.53934 * 113.73746 * 281.72478 * 11 10 9 14 14 N 1.47953 * 86.18542 * 221.92486 * 13 11 10 15 15 C 1.46902 * 111.00257 * 137.57946 * 14 13 11 16 16 C 1.50707 * 109.46799 * 70.64017 * 15 14 13 17 17 O 1.21296 * 120.00021 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99977 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99979 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00015 * 0.02562 * 19 18 16 21 21 C 1.38954 * 119.99955 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99644 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99793 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47147 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46986 * 120.00779 * 23 21 19 26 26 H 1.48501 * 109.47179 * 240.00089 * 23 21 19 27 27 C 1.47961 * 90.76344 * 24.68813 * 14 13 11 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 35 35 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 37 37 H 1.08001 * 119.99952 * 180.02562 * 5 2 1 38 38 H 1.07998 * 120.00189 * 359.97438 * 6 5 2 39 39 H 0.97003 * 119.99468 * 359.97438 * 9 7 6 40 40 H 1.08998 * 109.46965 * 299.99826 * 10 9 7 41 41 H 1.09002 * 109.46883 * 59.99667 * 10 9 7 42 42 H 0.96695 * 113.99388 * 309.66857 * 12 11 10 43 43 H 1.09007 * 113.75792 * 336.24335 * 13 11 10 44 44 H 1.09007 * 113.75909 * 107.60493 * 13 11 10 45 45 H 1.08994 * 109.47142 * 190.64040 * 15 14 13 46 46 H 1.08999 * 109.47032 * 310.64448 * 15 14 13 47 47 H 0.97001 * 119.99625 * 0.02562 * 18 16 15 48 48 H 0.97002 * 119.99281 * 179.97438 * 22 21 19 49 49 H 1.08999 * 113.75869 * 220.98962 * 27 14 13 50 50 H 1.09005 * 113.85630 * 89.64142 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7105 -1.2305 6 6 1.1680 -1.2154 -2.1061 7 6 1.6584 -1.9084 -3.3075 8 8 2.8540 -2.0192 -3.5002 9 7 0.7826 -2.4207 -4.1947 10 6 1.2709 -3.1103 -5.3914 11 6 0.0809 -3.5919 -6.2237 12 8 -0.8463 -2.5474 -6.5263 13 6 -0.5795 -4.8710 -5.6784 14 7 -0.6562 -5.3139 -7.0879 15 6 -0.2899 -6.7308 -7.2153 16 6 -1.3758 -7.5862 -6.6149 17 8 -2.3583 -7.0665 -6.1292 18 7 -1.2557 -8.9286 -6.6185 19 6 -2.2432 -9.7066 -6.0719 20 1 -3.1176 -9.2439 -5.6387 21 6 -2.1191 -11.0906 -6.0752 22 7 -1.0548 -11.6536 -6.6018 23 14 -3.4650 -12.1508 -5.3310 24 1 -4.5488 -11.2804 -4.8085 25 1 -4.0156 -13.0550 -6.3724 26 1 -2.9009 -12.9600 -4.2209 27 6 0.4814 -4.4380 -7.4457 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 -1.7489 1.2492 35 1 3.1300 -0.7217 1.2490 36 1 1.6767 -0.2075 2.1393 37 1 3.0942 -0.8095 -1.4012 38 1 0.1062 -1.1167 -1.9352 39 1 -0.1711 -2.3326 -4.0407 40 1 1.8758 -2.4245 -5.9845 41 1 1.8771 -3.9665 -5.0954 42 1 -1.1228 -2.0318 -5.7564 43 1 0.0831 -5.4790 -5.0624 44 1 -1.5528 -4.7007 -5.2180 45 1 -0.1705 -6.9819 -8.2691 46 1 0.6477 -6.9123 -6.6900 47 1 -0.4701 -9.3441 -7.0073 48 1 -0.9681 -12.6197 -6.6038 49 1 0.3559 -3.9219 -8.3975 50 1 1.4552 -4.9179 -7.3475 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699910212.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:31 Heat of formation + Delta-G solvation = -103.352869 kcal Electronic energy + Delta-G solvation = -29041.346840 eV Core-core repulsion = 24875.788432 eV Total energy + Delta-G solvation = -4165.558408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.82963 -40.68985 -39.73642 -38.62598 -36.95496 -35.91065 -35.34704 -33.32267 -32.68833 -31.47329 -28.81910 -28.20748 -28.10404 -27.28049 -26.82222 -24.79218 -23.42069 -21.51614 -21.04424 -20.96671 -19.92005 -19.31088 -18.77751 -17.91343 -17.61442 -17.10181 -16.77520 -16.61291 -16.45425 -16.28865 -15.84764 -15.59168 -15.49504 -15.23058 -15.03127 -14.87656 -14.52583 -14.35204 -14.15421 -13.70607 -13.48610 -13.39096 -13.18728 -13.16460 -12.98782 -12.94686 -12.91402 -12.54138 -12.48460 -12.42661 -12.13578 -11.96116 -11.93640 -11.83855 -11.61450 -11.52811 -11.03129 -10.97270 -10.52056 -10.36521 -10.13973 -10.03630 -9.70134 -8.48785 -5.97533 0.37322 1.34920 1.40263 1.54503 2.02108 2.05519 2.26736 2.27258 2.66275 2.91752 3.17737 3.23166 3.32228 3.52411 3.62742 3.84727 3.98105 4.07696 4.11030 4.19579 4.26417 4.28228 4.40182 4.43406 4.44512 4.54307 4.59602 4.66666 4.76064 4.76624 4.78692 4.91042 4.95618 5.00311 5.03456 5.12909 5.20765 5.26681 5.29804 5.35343 5.39618 5.42017 5.43849 5.57019 5.83447 6.03201 6.42629 6.57719 6.66931 7.10513 7.14935 7.53363 8.08951 8.68848 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012680 B = 0.002002 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.610844 B =13984.254534 C =15314.314523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.047 4.047 3 C -0.138 4.138 4 C -0.140 4.140 5 C -0.045 4.045 6 C -0.228 4.228 7 C 0.543 3.457 8 O -0.591 6.591 9 N -0.715 5.715 10 C 0.110 3.890 11 C 0.113 3.887 12 O -0.534 6.534 13 C -0.005 4.005 14 N -0.474 5.474 15 C 0.019 3.981 16 C 0.440 3.560 17 O -0.618 6.618 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.014 4.014 22 N -0.920 5.920 23 Si 0.994 3.006 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.270 1.270 27 C 0.021 3.979 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.158 0.842 39 H 0.413 0.587 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.388 0.612 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.110 0.890 46 H 0.080 0.920 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.107 0.893 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.981 24.411 10.940 27.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.048 4.048 3 C -0.195 4.195 4 C -0.197 4.197 5 C -0.065 4.065 6 C -0.249 4.249 7 C 0.334 3.666 8 O -0.473 6.473 9 N -0.367 5.367 10 C -0.014 4.014 11 C 0.071 3.929 12 O -0.341 6.341 13 C -0.134 4.134 14 N -0.196 5.196 15 C -0.112 4.112 16 C 0.227 3.773 17 O -0.504 6.504 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.096 0.904 21 C -0.214 4.214 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.195 1.195 27 C -0.108 4.108 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.176 0.824 39 H 0.250 0.750 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.239 0.761 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.128 0.872 46 H 0.098 0.902 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.126 0.874 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.645 24.256 10.100 27.364 hybrid contribution 0.078 -1.231 0.881 1.516 sum 7.723 23.025 10.981 26.653 Atomic orbital electron populations 1.22033 0.93018 1.02548 1.03068 1.19841 0.96828 0.95779 0.92309 1.21833 1.01305 0.93567 1.02800 1.21853 1.01334 1.00227 0.96316 1.23871 0.99579 0.90012 0.93003 1.22796 1.02460 1.04660 0.94957 1.19114 0.85455 0.78039 0.83981 1.90770 1.17658 1.60931 1.77927 1.45701 1.10626 1.57563 1.22846 1.21866 0.95811 0.97884 0.85880 1.22705 0.88264 0.86546 0.95412 1.86601 1.62982 1.46629 1.37907 1.24500 1.01310 0.95899 0.91739 1.68451 1.35640 1.01998 1.13556 1.22408 0.95543 0.90276 1.02983 1.20719 0.89479 0.82825 0.84230 1.90489 1.34642 1.73487 1.51790 1.41947 1.21056 1.04935 1.53179 1.19684 1.01207 0.88852 1.36440 0.90380 1.26059 1.00053 0.97742 0.97532 1.69680 1.28857 1.12249 1.45315 0.84863 0.77622 0.77670 0.78131 1.19802 1.19618 1.19502 1.24252 0.94699 0.92632 0.99210 0.91525 0.91144 0.92084 0.90733 0.92444 0.92396 0.92870 0.92412 0.90673 0.87310 0.82435 0.75014 0.89956 0.90631 0.76134 0.90973 0.90585 0.87193 0.90177 0.77010 0.91289 0.87448 0.87339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 7.13 71.98 0.51 -0.69 16 2 C -0.05 -0.48 0.99 -52.93 -0.05 -0.53 16 3 C -0.14 -1.18 8.46 71.98 0.61 -0.57 16 4 C -0.14 -1.36 8.46 71.98 0.61 -0.76 16 5 C -0.04 -0.67 8.33 24.52 0.20 -0.46 16 6 C -0.23 -3.45 9.00 23.43 0.21 -3.24 16 7 C 0.54 11.57 7.76 86.57 0.67 12.24 16 8 O -0.59 -17.57 16.22 -4.06 -0.07 -17.63 16 9 N -0.71 -12.20 5.33 -466.72 -2.49 -14.69 16 10 C 0.11 2.13 5.28 86.38 0.46 2.59 16 11 C 0.11 2.47 1.52 -10.15 -0.02 2.46 16 12 O -0.53 -11.68 13.51 -148.98 -2.01 -13.69 16 13 C -0.01 -0.15 6.16 86.41 0.53 0.38 16 14 N -0.47 -15.51 5.95 -915.22 -5.44 -20.95 16 15 C 0.02 0.68 5.31 85.56 0.45 1.13 16 16 C 0.44 21.23 7.59 87.66 0.67 21.90 16 17 O -0.62 -34.60 15.13 -3.08 -0.05 -34.64 16 18 N -0.57 -29.74 5.29 -306.97 -1.62 -31.37 16 19 C -0.33 -19.03 9.68 84.04 0.81 -18.21 16 20 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 21 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 22 N -0.92 -49.88 13.05 21.66 0.28 -49.60 16 23 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 27 C 0.02 0.47 7.37 86.41 0.64 1.11 16 28 H 0.07 0.47 7.50 -2.39 -0.02 0.46 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.52 7.50 -2.38 -0.02 0.50 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.11 2.01 7.49 -2.91 -0.02 1.98 16 38 H 0.16 1.52 5.74 -2.91 -0.02 1.50 16 39 H 0.41 4.82 7.29 -92.71 -0.68 4.15 16 40 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.08 1.59 8.04 -2.39 -0.02 1.57 16 42 H 0.39 5.25 7.61 -74.06 -0.56 4.69 16 43 H 0.07 2.12 7.67 -2.38 -0.02 2.11 16 44 H 0.08 2.57 8.09 -2.38 -0.02 2.55 16 45 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 46 H 0.08 2.37 7.69 -2.39 -0.02 2.35 16 47 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 48 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 49 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 50 H 0.11 1.96 7.75 -2.38 -0.02 1.94 16 Total: -1.00 -77.62 411.04 -3.60 -81.22 By element: Atomic # 1 Polarization: 40.13 SS G_CDS: -1.00 Total: 39.13 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 6.77 Total: 17.05 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -9.27 Total: -116.61 kcal Atomic # 8 Polarization: -63.84 SS G_CDS: -2.12 Total: -65.96 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -77.62 -3.60 -81.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699910212.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.135 kcal (2) G-P(sol) polarization free energy of solvation -77.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds