Wall clock time and date at job start Sat Apr 11 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99773 * 2 1 4 4 C 1.53001 * 109.47111 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46768 * 65.00417 * 4 3 2 6 6 C 1.46498 * 120.00052 * 269.99832 * 5 4 3 7 7 C 1.50701 * 109.47543 * 274.20451 * 6 5 4 8 8 H 1.08004 * 119.99496 * 4.92072 * 7 6 5 9 9 C 1.37871 * 120.00420 * 184.92722 * 7 6 5 10 10 N 1.31518 * 120.00179 * 5.08829 * 9 7 6 11 11 Si 1.86803 * 120.00060 * 185.08976 * 9 7 6 12 12 H 1.48500 * 109.46839 * 89.99734 * 11 9 7 13 13 H 1.48500 * 109.47056 * 209.99685 * 11 9 7 14 14 H 1.48501 * 109.47136 * 329.99813 * 11 9 7 15 15 C 1.34775 * 120.00193 * 89.99928 * 5 4 3 16 16 O 1.21658 * 119.99964 * 5.06370 * 15 5 4 17 17 C 1.46737 * 120.00281 * 185.06381 * 15 5 4 18 18 N 1.29689 * 119.54842 * 275.70975 * 17 15 5 19 19 N 1.39862 * 121.13965 * 180.38436 * 18 17 15 20 20 C 1.46504 * 119.79400 * 199.14597 * 19 18 17 21 21 C 1.52998 * 109.47142 * 266.36953 * 20 19 18 22 22 C 1.53000 * 109.46812 * 63.29132 * 21 20 19 23 23 C 1.53000 * 109.47163 * 183.28964 * 21 20 19 24 24 C 1.34745 * 120.40509 * 19.17040 * 19 18 17 25 25 O 1.21256 * 120.12149 * 179.75592 * 24 19 18 26 26 C 1.50773 * 119.75781 * 359.72507 * 24 19 18 27 27 C 1.50541 * 119.54612 * 95.97689 * 17 15 5 28 28 H 1.08996 * 109.46962 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47103 * 299.99660 * 1 2 3 30 30 H 1.08994 * 109.47590 * 59.99672 * 1 2 3 31 31 H 1.09008 * 109.47374 * 60.00753 * 3 2 1 32 32 H 1.09003 * 109.47439 * 300.00309 * 3 2 1 33 33 H 1.08997 * 109.47491 * 305.00586 * 4 3 2 34 34 H 1.09001 * 109.47231 * 184.99879 * 4 3 2 35 35 H 1.08998 * 109.47272 * 34.20317 * 6 5 4 36 36 H 1.09001 * 109.47228 * 154.20073 * 6 5 4 37 37 H 0.96990 * 120.00260 * 185.00721 * 10 9 7 38 38 H 1.09000 * 109.47079 * 26.37415 * 20 19 18 39 39 H 1.09001 * 109.46700 * 146.37577 * 20 19 18 40 40 H 1.09002 * 109.47238 * 303.29692 * 21 20 19 41 41 H 1.09002 * 109.47166 * 174.62841 * 22 21 20 42 42 H 1.08993 * 109.47326 * 294.62830 * 22 21 20 43 43 H 1.09004 * 109.47351 * 54.63043 * 22 21 20 44 44 H 1.09005 * 109.46913 * 60.00503 * 23 21 20 45 45 H 1.08997 * 109.47389 * 180.02562 * 23 21 20 46 46 H 1.08997 * 109.46928 * 300.00466 * 23 21 20 47 47 H 1.08994 * 109.51733 * 206.82696 * 26 24 19 48 48 H 1.08994 * 109.51108 * 86.66402 * 26 24 19 49 49 H 1.09001 * 109.44966 * 265.59017 * 27 17 15 50 50 H 1.09005 * 109.45107 * 25.50676 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1062 -0.8924 -1.3405 7 6 5.4672 -1.3071 -0.8435 8 1 6.1356 -0.5709 -0.4221 9 6 5.8590 -2.6263 -0.9270 10 7 5.0879 -3.5045 -1.5301 11 14 7.4854 -3.1664 -0.1835 12 1 7.2722 -3.5776 1.2275 13 1 8.0268 -4.3128 -0.9568 14 1 8.4499 -2.0383 -0.2300 15 6 4.2632 1.3331 -2.3200 16 8 4.2449 2.5454 -2.2198 17 6 4.5973 0.7082 -3.6049 18 7 5.8158 0.3270 -3.8331 19 7 6.1727 -0.2649 -5.0490 20 6 7.4034 -1.0544 -5.1407 21 6 8.5480 -0.1606 -5.6225 22 6 8.8051 0.9393 -4.5905 23 6 9.8137 -1.0024 -5.7968 24 6 5.3919 -0.1132 -6.1366 25 8 5.7086 -0.6249 -7.1893 26 6 4.1226 0.6948 -6.0397 27 6 3.5224 0.5238 -4.6426 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.6886 1.8464 0.8901 32 1 1.6885 1.8464 -0.8900 33 1 3.8508 0.5685 0.8426 34 1 3.9784 2.1766 0.0902 35 1 3.3370 -1.3639 -0.7289 36 1 3.9876 -1.2046 -2.3780 37 1 5.3277 -4.4443 -1.5259 38 1 7.6482 -1.4610 -4.1594 39 1 7.2589 -1.8719 -5.8471 40 1 8.2784 0.2923 -6.5766 41 1 9.6805 1.5175 -4.8862 42 1 7.9372 1.5963 -4.5358 43 1 8.9809 0.4876 -3.6141 44 1 9.6304 -1.7860 -6.5321 45 1 10.6292 -0.3656 -6.1396 46 1 10.0831 -1.4552 -4.8427 47 1 3.4105 0.3452 -6.7871 48 1 4.3468 1.7472 -6.2133 49 1 3.0964 -0.4753 -4.5504 50 1 2.7397 1.2671 -4.4904 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127320288.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:56 Heat of formation + Delta-G solvation = -80.710495 kcal Electronic energy + Delta-G solvation = -31921.979712 eV Core-core repulsion = 27757.403151 eV Total energy + Delta-G solvation = -4164.576561 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.49682 -39.30277 -37.55857 -36.70000 -36.07497 -35.03770 -32.88065 -32.61356 -31.21088 -29.78290 -27.29762 -26.99407 -26.90365 -26.00842 -24.51489 -23.75213 -22.91288 -22.16362 -20.31940 -19.32452 -17.61872 -17.28933 -16.59310 -16.51820 -16.24901 -16.05745 -15.69690 -15.48769 -15.09200 -14.77198 -14.54445 -14.38851 -14.32139 -13.86566 -13.55991 -13.16857 -13.09368 -12.55489 -12.45050 -12.38989 -12.22728 -12.09445 -12.02717 -11.82920 -11.77028 -11.59681 -11.44676 -11.24079 -10.98292 -10.90796 -10.89922 -10.73816 -10.59953 -10.57514 -10.41346 -10.13932 -9.75548 -9.60758 -9.43007 -9.15786 -8.49592 -8.25938 -7.86023 -6.12310 -4.16422 1.76168 2.40900 2.87880 3.13207 3.25501 3.33268 3.36945 3.65122 4.06429 4.30022 4.42735 4.68787 4.79066 5.00495 5.08571 5.14526 5.17077 5.22498 5.28928 5.30968 5.40194 5.49587 5.56708 5.58245 5.61259 5.66234 5.72960 5.77365 5.79366 5.83992 5.86890 5.99573 6.06772 6.07221 6.11901 6.23054 6.27757 6.32158 6.53827 6.61842 6.63163 6.68274 7.23151 7.39430 7.48221 7.82297 7.96848 8.08258 8.15793 8.37586 8.62806 8.90278 9.48829 10.95225 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009075 B = 0.005127 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.626159 B = 5459.777918 C = 7178.506071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.047 3.953 4 C 0.120 3.880 5 N -0.568 5.568 6 C 0.240 3.760 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.068 3.932 10 N -0.891 5.891 11 Si 0.888 3.112 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.272 1.272 15 C 0.582 3.418 16 O -0.560 6.560 17 C 0.094 3.906 18 N -0.181 5.181 19 N -0.449 5.449 20 C 0.142 3.858 21 C -0.110 4.110 22 C -0.139 4.139 23 C -0.143 4.143 24 C 0.494 3.506 25 O -0.533 6.533 26 C -0.139 4.139 27 C -0.107 4.107 28 H 0.083 0.917 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.036 0.964 37 H 0.263 0.737 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.113 0.887 48 H 0.103 0.897 49 H 0.102 0.898 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.786 7.207 -3.232 8.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.031 4.031 4 C -0.004 4.004 5 N -0.297 5.297 6 C 0.120 3.880 7 C -0.562 4.562 8 H 0.079 0.921 9 C -0.134 4.134 10 N -0.530 5.530 11 Si 0.716 3.284 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.197 1.197 15 C 0.366 3.634 16 O -0.439 6.439 17 C -0.103 4.103 18 N 0.011 4.989 19 N -0.267 5.267 20 C 0.021 3.979 21 C -0.129 4.129 22 C -0.197 4.197 23 C -0.201 4.201 24 C 0.282 3.718 25 O -0.407 6.407 26 C -0.179 4.179 27 C -0.147 4.147 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.131 0.869 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.549 7.046 -3.588 8.307 hybrid contribution -0.105 -0.354 0.040 0.371 sum -2.654 6.692 -3.548 8.026 Atomic orbital electron populations 1.22688 0.82066 1.02457 0.99229 1.88066 1.18733 1.27339 1.95216 1.23034 0.95001 0.85049 0.99987 1.21442 0.91167 0.99990 0.87759 1.48154 1.61831 1.10382 1.09319 1.19563 0.97777 0.71992 0.98628 1.21398 1.00228 0.93870 1.40734 0.92114 1.24829 0.97122 0.96676 0.94769 1.69923 1.38955 1.02331 1.41798 0.86641 0.84155 0.78381 0.79251 1.20638 1.21254 1.19660 1.17259 0.77406 0.85941 0.82782 1.90767 1.55350 1.13446 1.84347 1.24274 0.91724 0.97858 0.96493 1.75046 1.17163 1.05540 1.01102 1.48996 1.23099 1.49524 1.05109 1.21598 0.80545 0.92262 1.03510 1.21466 0.94981 0.96923 0.99559 1.21759 1.00923 0.98072 0.98925 1.21749 0.96621 0.99708 1.01987 1.21172 0.85515 0.81195 0.83894 1.90682 1.73466 1.48305 1.28275 1.21785 0.95473 1.01934 0.98749 1.20954 0.97467 1.05313 0.90974 0.89854 0.94653 0.94595 0.92881 0.93339 0.88823 0.88977 0.93321 0.94593 0.92749 0.88570 0.89538 0.91287 0.93464 0.92495 0.92048 0.92588 0.92522 0.92253 0.86893 0.87848 0.88003 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.04 9.46 -35.23 -0.33 -6.37 16 3 C 0.05 0.68 6.28 37.16 0.23 0.91 16 4 C 0.12 2.02 5.87 -4.04 -0.02 1.99 16 5 N -0.57 -11.29 2.42 -176.59 -0.43 -11.72 16 6 C 0.24 5.53 4.96 -5.19 -0.03 5.51 16 7 C -0.52 -13.33 9.38 -34.44 -0.32 -13.65 16 8 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 9 C 0.07 1.79 5.45 -17.82 -0.10 1.70 16 10 N -0.89 -24.37 13.28 55.43 0.74 -23.64 16 11 Si 0.89 20.58 29.54 -169.99 -5.02 15.55 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 C 0.58 11.53 7.23 -12.83 -0.09 11.44 16 16 O -0.56 -11.68 16.66 5.23 0.09 -11.59 16 17 C 0.09 1.74 4.53 -80.14 -0.36 1.38 16 18 N -0.18 -3.58 10.46 34.90 0.37 -3.21 16 19 N -0.45 -8.26 3.07 -60.28 -0.19 -8.45 16 20 C 0.14 2.46 5.05 -4.04 -0.02 2.44 16 21 C -0.11 -1.63 3.12 -90.62 -0.28 -1.91 16 22 C -0.14 -2.11 8.78 37.16 0.33 -1.78 16 23 C -0.14 -1.78 9.19 37.16 0.34 -1.44 16 24 C 0.49 8.64 7.53 -10.96 -0.08 8.56 16 25 O -0.53 -10.35 16.73 5.58 0.09 -10.25 16 26 C -0.14 -1.89 6.20 -27.84 -0.17 -2.07 16 27 C -0.11 -1.56 6.01 -27.95 -0.17 -1.73 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.03 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.60 8.07 -51.93 -0.42 1.18 16 34 H 0.09 1.47 7.36 -51.93 -0.38 1.09 16 35 H 0.05 1.20 7.05 -51.93 -0.37 0.83 16 36 H 0.04 0.89 6.63 -51.93 -0.34 0.54 16 37 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 38 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 39 H 0.09 1.48 7.53 -51.93 -0.39 1.09 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.95 7.28 -51.93 -0.38 0.57 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 49 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 50 H 0.10 1.23 8.07 -51.93 -0.42 0.81 16 LS Contribution 413.80 15.07 6.24 6.24 Total: -1.00 -31.03 413.80 -6.67 -37.71 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -8.59 Total: 2.90 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 0.36 Total: 12.84 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.49 Total: -47.01 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.15 Total: -28.22 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.03 -6.67 -37.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127320288.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.003 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds