Wall clock time and date at job start Sat Apr 11 2020 05:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47173 * 2 1 4 4 C 1.53001 * 109.47175 * 120.00144 * 2 1 3 5 5 H 1.08999 * 109.46934 * 59.99915 * 4 2 1 6 6 C 1.53002 * 109.46959 * 300.00150 * 4 2 1 7 7 N 1.46496 * 109.47022 * 185.00029 * 6 4 2 8 8 C 1.34780 * 120.00233 * 179.97438 * 7 6 4 9 9 O 1.21283 * 119.99843 * 359.97438 * 8 7 6 10 10 C 1.50696 * 120.00140 * 179.97438 * 8 7 6 11 11 C 1.53006 * 119.80754 * 250.98395 * 10 8 7 12 12 C 1.53006 * 60.65099 * 247.68803 * 11 10 8 13 13 H 1.08998 * 120.24712 * 112.13534 * 12 11 10 14 14 C 1.54477 * 118.06664 * 269.58829 * 12 11 10 15 15 O 1.44431 * 104.80077 * 86.82895 * 14 12 11 16 16 C 1.43866 * 105.56659 * 319.94365 * 15 14 12 17 17 N 1.46896 * 109.47179 * 179.97438 * 4 2 1 18 18 C 1.46899 * 111.00338 * 274.99816 * 17 4 2 19 19 C 1.50698 * 109.46987 * 179.97438 * 18 17 4 20 20 O 1.21293 * 120.00006 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99538 * 179.97438 * 19 18 17 22 22 C 1.37104 * 119.99773 * 179.72591 * 21 19 18 23 23 H 1.08002 * 119.99671 * 0.27660 * 22 21 19 24 24 C 1.38950 * 120.00030 * 180.27703 * 22 21 19 25 25 N 1.31414 * 119.99926 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99969 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47425 * 90.00231 * 26 24 22 28 28 H 1.48499 * 109.47218 * 210.00087 * 26 24 22 29 29 H 1.48505 * 109.47256 * 330.00093 * 26 24 22 30 30 H 1.08997 * 109.47117 * 299.99927 * 1 2 3 31 31 H 1.09007 * 109.46836 * 59.99749 * 1 2 3 32 32 H 1.08999 * 109.47258 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47117 * 240.00073 * 2 1 3 34 34 H 1.08998 * 109.47058 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47320 * 300.00017 * 3 2 1 36 36 H 1.09003 * 109.47399 * 60.00271 * 3 2 1 37 37 H 1.08998 * 109.46704 * 304.99673 * 6 4 2 38 38 H 1.08999 * 109.47508 * 64.99851 * 6 4 2 39 39 H 0.96999 * 120.00233 * 359.97438 * 7 6 4 40 40 H 1.09005 * 117.43263 * 355.36105 * 11 10 8 41 41 H 1.09000 * 117.43452 * 140.01410 * 11 10 8 42 42 H 1.08998 * 110.37816 * 205.65613 * 14 12 11 43 43 H 1.09001 * 110.36996 * 328.00112 * 14 12 11 44 44 H 1.08999 * 109.55920 * 281.17095 * 16 15 14 45 45 H 1.09004 * 110.92085 * 159.02028 * 16 15 14 46 46 H 1.00900 * 110.99693 * 151.04343 * 17 4 2 47 47 H 1.09003 * 109.46477 * 60.00383 * 18 17 4 48 48 H 1.08993 * 109.47002 * 300.00709 * 18 17 4 49 49 H 0.97001 * 120.00485 * 0.02562 * 21 19 18 50 50 H 0.96999 * 119.99863 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7489 1.2492 6 6 1.5300 -0.0001 2.4985 7 7 2.1141 -0.6176 3.6916 8 6 1.8060 -0.1439 4.9152 9 8 1.0455 0.7940 5.0285 10 6 2.4064 -0.7796 6.1425 11 6 1.5258 -1.6136 7.0752 12 6 2.0913 -0.2810 7.5705 13 1 1.4258 0.5610 7.7610 14 6 3.4617 -0.2929 8.2834 15 8 4.4322 -0.1880 7.2189 16 6 3.9323 -1.0203 6.1572 17 7 3.5090 -0.7218 1.2489 18 6 4.0349 -1.8455 0.4624 19 6 5.5414 -1.8127 0.4847 20 8 6.1200 -0.9394 1.0961 21 7 6.2457 -2.7543 -0.1739 22 6 7.6162 -2.7212 -0.1583 23 1 8.1314 -1.9432 0.3854 24 6 8.3424 -3.6887 -0.8421 25 7 7.7154 -4.6351 -1.5041 26 14 10.2097 -3.6440 -0.8202 27 1 10.7104 -4.4372 0.3309 28 1 10.7335 -4.2211 -2.0843 29 1 10.6697 -2.2380 -0.6900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.8184 1.0502 2.4548 38 1 0.4437 -0.0769 2.5444 39 1 2.7226 -1.3675 3.6010 40 1 0.4592 -1.6555 6.8545 41 1 1.9554 -2.5261 7.4887 42 1 3.5457 0.5586 8.9586 43 1 3.5971 -1.2264 8.8296 44 1 4.1495 -2.0650 6.3795 45 1 4.3705 -0.7360 5.2005 46 1 3.8707 -0.7390 2.1907 47 1 3.6852 -1.7636 -0.5668 48 1 3.6851 -2.7844 0.8914 49 1 5.7830 -3.4529 -0.6625 50 1 8.2224 -5.3106 -1.9811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732560505.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:14 Heat of formation + Delta-G solvation = -85.268607 kcal Electronic energy + Delta-G solvation = -30272.311634 eV Core-core repulsion = 26107.537419 eV Total energy + Delta-G solvation = -4164.774215 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.15729 -39.46645 -38.45754 -37.58674 -34.94965 -34.39019 -34.10945 -33.19987 -31.24436 -29.68836 -28.39925 -27.14609 -26.23070 -25.70091 -24.38421 -23.57434 -22.70935 -21.43073 -20.17354 -19.30119 -19.03208 -17.98501 -17.74857 -16.70591 -16.36479 -15.92680 -15.84696 -15.50393 -15.35070 -14.99146 -14.64085 -14.51164 -14.45853 -14.05159 -13.85705 -13.79453 -13.53628 -13.31478 -13.12405 -12.88671 -12.43720 -12.25963 -12.14587 -11.99651 -11.81750 -11.61377 -11.60623 -11.50537 -11.10097 -11.08215 -10.93661 -10.83221 -10.61250 -10.42714 -10.40864 -10.24345 -10.10960 -9.79521 -9.53893 -9.24817 -8.49988 -8.15109 -7.99493 -6.44889 -3.85738 2.24771 2.81287 3.07114 3.15843 3.25074 3.31099 3.69915 3.86039 3.99540 4.00848 4.09628 4.23733 4.38625 4.55993 4.62017 4.64907 4.83039 4.97071 4.99414 5.12897 5.18913 5.20971 5.22792 5.27926 5.30568 5.33762 5.43098 5.46134 5.49487 5.58028 5.65783 5.71765 5.73339 5.81789 5.88923 5.94878 6.00023 6.10149 6.22045 6.22970 6.38520 6.41975 6.60311 7.10434 7.22216 7.52241 7.52628 7.97984 8.02923 8.57458 9.14810 9.50578 10.01678 10.72722 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008872 B = 0.003079 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3155.241168 B = 9091.167934 C =11584.339306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.081 4.081 3 C -0.143 4.143 4 C 0.080 3.920 5 H 0.049 0.951 6 C 0.114 3.886 7 N -0.724 5.724 8 C 0.565 3.435 9 O -0.537 6.537 10 C -0.212 4.212 11 C -0.107 4.107 12 C -0.156 4.156 13 H 0.132 0.868 14 C 0.071 3.929 15 O -0.364 6.364 16 C 0.085 3.915 17 N -0.660 5.660 18 C 0.049 3.951 19 C 0.439 3.561 20 O -0.581 6.581 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.050 0.950 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.400 0.600 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.104 0.896 46 H 0.347 0.653 47 H 0.088 0.912 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.348 2.736 12.140 20.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.100 4.100 3 C -0.200 4.200 4 C -0.030 4.030 5 H 0.067 0.933 6 C -0.009 4.009 7 N -0.376 5.376 8 C 0.351 3.649 9 O -0.413 6.413 10 C -0.216 4.216 11 C -0.144 4.144 12 C -0.175 4.175 13 H 0.150 0.850 14 C -0.005 4.005 15 O -0.282 6.282 16 C 0.008 3.992 17 N -0.295 5.295 18 C -0.083 4.083 19 C 0.225 3.775 20 O -0.466 6.466 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.235 0.765 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.122 0.878 46 H 0.168 0.832 47 H 0.106 0.894 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.148 4.439 11.986 20.594 hybrid contribution 0.514 -1.787 -0.045 1.860 sum -15.634 2.652 11.940 19.850 Atomic orbital electron populations 1.21944 0.95472 1.01561 1.02010 1.21029 0.94476 0.97478 0.97066 1.21800 1.03219 0.94499 1.00519 1.21827 0.88852 0.97973 0.94375 0.93293 1.21782 0.98127 0.98713 0.82290 1.45969 1.49369 1.36432 1.05844 1.18980 0.80458 0.82451 0.83054 1.90704 1.36289 1.27810 1.86525 1.23357 0.97319 1.09013 0.91873 1.23165 0.99271 0.94626 0.97375 1.24358 1.00385 0.99972 0.92806 0.85027 1.23007 0.84582 1.02658 0.90297 1.89132 1.44877 1.68534 1.25643 1.22784 0.87907 0.95463 0.93074 1.60056 1.04578 1.45405 1.19423 1.21762 0.95276 0.91693 0.99611 1.19777 0.87985 0.84732 0.85052 1.90540 1.71068 1.37832 1.47117 1.41864 1.07038 1.25577 1.45436 1.19705 0.81045 1.12064 1.30085 0.87898 1.25258 1.00714 0.95545 0.96360 1.69610 1.36629 1.15030 1.33020 0.85865 0.82205 0.78753 0.77535 1.20407 1.20924 1.19361 0.92496 0.92413 0.92876 0.90628 0.90556 0.93548 0.93126 0.89752 0.90602 0.76506 0.87264 0.87464 0.88101 0.91477 0.91019 0.87756 0.83214 0.89410 0.93905 0.77499 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.84 37.16 0.33 -1.03 16 2 C -0.08 -0.88 2.83 -90.62 -0.26 -1.14 16 3 C -0.14 -1.70 8.69 37.16 0.32 -1.38 16 4 C 0.08 0.91 2.02 -67.71 -0.14 0.77 16 5 H 0.05 0.52 7.80 -51.93 -0.40 0.11 16 6 C 0.11 1.29 4.59 -4.04 -0.02 1.27 16 7 N -0.72 -8.05 4.88 -60.30 -0.29 -8.35 16 8 C 0.56 7.13 7.42 -10.99 -0.08 7.05 16 9 O -0.54 -8.53 16.85 5.56 0.09 -8.44 16 10 C -0.21 -2.17 2.84 -154.09 -0.44 -2.61 16 11 C -0.11 -0.80 9.89 -26.73 -0.26 -1.07 16 12 C -0.16 -1.41 6.90 -89.05 -0.61 -2.03 16 13 H 0.13 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.07 0.62 7.45 37.93 0.28 0.90 16 15 O -0.36 -4.48 11.62 -35.23 -0.41 -4.89 16 16 C 0.08 0.90 7.09 37.93 0.27 1.17 16 17 N -0.66 -9.66 5.16 -108.00 -0.56 -10.22 16 18 C 0.05 0.80 5.96 -4.98 -0.03 0.77 16 19 C 0.44 9.88 7.82 -10.99 -0.09 9.80 16 20 O -0.58 -15.22 15.78 5.55 0.09 -15.13 16 21 N -0.56 -13.78 5.29 -10.96 -0.06 -13.84 16 22 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 23 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.09 13.05 55.50 0.72 -23.36 16 26 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 30 H 0.06 0.50 6.54 -51.93 -0.34 0.16 16 31 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.88 7.45 -51.93 -0.39 0.49 16 34 H 0.08 1.11 7.60 -51.93 -0.39 0.71 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.58 6.32 -51.93 -0.33 0.25 16 37 H 0.08 1.09 6.17 -51.93 -0.32 0.77 16 38 H 0.08 0.82 6.71 -51.93 -0.35 0.47 16 39 H 0.40 3.99 7.17 -40.82 -0.29 3.70 16 40 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.10 1.20 7.88 -51.93 -0.41 0.79 16 46 H 0.35 5.26 6.41 -39.29 -0.25 5.01 16 47 H 0.09 1.34 7.44 -51.93 -0.39 0.96 16 48 H 0.04 0.61 8.05 -51.93 -0.42 0.19 16 49 H 0.39 9.18 7.90 -40.82 -0.32 8.85 16 50 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 403.24 15.07 6.08 6.08 Total: -1.00 -33.01 403.24 -8.24 -41.25 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -7.92 Total: 16.46 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -0.96 Total: 4.67 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.19 Total: -55.76 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.23 Total: -28.46 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.01 -8.24 -41.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732560505.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.019 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds