Wall clock time and date at job start Sat Apr 11 2020 05:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47173 * 2 1 4 4 C 1.53001 * 109.47175 * 120.00144 * 2 1 3 5 5 H 1.08999 * 109.46934 * 59.99915 * 4 2 1 6 6 C 1.53002 * 109.46959 * 300.00150 * 4 2 1 7 7 N 1.46496 * 109.47022 * 185.00029 * 6 4 2 8 8 C 1.34780 * 120.00233 * 179.97438 * 7 6 4 9 9 O 1.21283 * 119.99843 * 359.97438 * 8 7 6 10 10 C 1.50696 * 120.00140 * 179.97438 * 8 7 6 11 11 C 1.53006 * 119.80754 * 250.98395 * 10 8 7 12 12 C 1.53006 * 60.65099 * 247.68803 * 11 10 8 13 13 H 1.08998 * 120.24712 * 112.13534 * 12 11 10 14 14 C 1.54477 * 118.06664 * 269.58829 * 12 11 10 15 15 O 1.44431 * 104.80077 * 86.82895 * 14 12 11 16 16 C 1.43866 * 105.56659 * 319.94365 * 15 14 12 17 17 N 1.46896 * 109.47179 * 179.97438 * 4 2 1 18 18 C 1.46899 * 111.00338 * 274.99816 * 17 4 2 19 19 C 1.50698 * 109.46987 * 179.97438 * 18 17 4 20 20 O 1.21293 * 120.00006 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99538 * 179.97438 * 19 18 17 22 22 C 1.37104 * 119.99773 * 179.72591 * 21 19 18 23 23 H 1.08002 * 119.99671 * 0.27660 * 22 21 19 24 24 C 1.38950 * 120.00030 * 180.27703 * 22 21 19 25 25 N 1.31414 * 119.99926 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99969 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47425 * 90.00231 * 26 24 22 28 28 H 1.48499 * 109.47218 * 210.00087 * 26 24 22 29 29 H 1.48505 * 109.47256 * 330.00093 * 26 24 22 30 30 H 1.08997 * 109.47117 * 299.99927 * 1 2 3 31 31 H 1.09007 * 109.46836 * 59.99749 * 1 2 3 32 32 H 1.08999 * 109.47258 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47117 * 240.00073 * 2 1 3 34 34 H 1.08998 * 109.47058 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47320 * 300.00017 * 3 2 1 36 36 H 1.09003 * 109.47399 * 60.00271 * 3 2 1 37 37 H 1.08998 * 109.46704 * 304.99673 * 6 4 2 38 38 H 1.08999 * 109.47508 * 64.99851 * 6 4 2 39 39 H 0.96999 * 120.00233 * 359.97438 * 7 6 4 40 40 H 1.09005 * 117.43263 * 355.36105 * 11 10 8 41 41 H 1.09000 * 117.43452 * 140.01410 * 11 10 8 42 42 H 1.08998 * 110.37816 * 205.65613 * 14 12 11 43 43 H 1.09001 * 110.36996 * 328.00112 * 14 12 11 44 44 H 1.08999 * 109.55920 * 281.17095 * 16 15 14 45 45 H 1.09004 * 110.92085 * 159.02028 * 16 15 14 46 46 H 1.00900 * 110.99693 * 151.04343 * 17 4 2 47 47 H 1.09003 * 109.46477 * 60.00383 * 18 17 4 48 48 H 1.08993 * 109.47002 * 300.00709 * 18 17 4 49 49 H 0.97001 * 120.00485 * 0.02562 * 21 19 18 50 50 H 0.96999 * 119.99863 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7489 1.2492 6 6 1.5300 -0.0001 2.4985 7 7 2.1141 -0.6176 3.6916 8 6 1.8060 -0.1439 4.9152 9 8 1.0455 0.7940 5.0285 10 6 2.4064 -0.7796 6.1425 11 6 1.5258 -1.6136 7.0752 12 6 2.0913 -0.2810 7.5705 13 1 1.4258 0.5610 7.7610 14 6 3.4617 -0.2929 8.2834 15 8 4.4322 -0.1880 7.2189 16 6 3.9323 -1.0203 6.1572 17 7 3.5090 -0.7218 1.2489 18 6 4.0349 -1.8455 0.4624 19 6 5.5414 -1.8127 0.4847 20 8 6.1200 -0.9394 1.0961 21 7 6.2457 -2.7543 -0.1739 22 6 7.6162 -2.7212 -0.1583 23 1 8.1314 -1.9432 0.3854 24 6 8.3424 -3.6887 -0.8421 25 7 7.7154 -4.6351 -1.5041 26 14 10.2097 -3.6440 -0.8202 27 1 10.7104 -4.4372 0.3309 28 1 10.7335 -4.2211 -2.0843 29 1 10.6697 -2.2380 -0.6900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.8184 1.0502 2.4548 38 1 0.4437 -0.0769 2.5444 39 1 2.7226 -1.3675 3.6010 40 1 0.4592 -1.6555 6.8545 41 1 1.9554 -2.5261 7.4887 42 1 3.5457 0.5586 8.9586 43 1 3.5971 -1.2264 8.8296 44 1 4.1495 -2.0650 6.3795 45 1 4.3705 -0.7360 5.2005 46 1 3.8707 -0.7390 2.1907 47 1 3.6852 -1.7636 -0.5668 48 1 3.6851 -2.7844 0.8914 49 1 5.7830 -3.4529 -0.6625 50 1 8.2224 -5.3106 -1.9811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732560505.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:13 Heat of formation + Delta-G solvation = -110.430087 kcal Electronic energy + Delta-G solvation = -30273.402718 eV Core-core repulsion = 26107.537419 eV Total energy + Delta-G solvation = -4165.865299 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.98119 -40.54295 -39.92203 -38.83780 -36.00306 -35.73011 -35.35762 -34.47682 -33.22256 -30.56372 -29.40538 -28.07155 -27.63352 -26.46520 -25.83484 -24.73891 -23.58950 -22.11430 -21.26303 -20.90786 -19.95231 -19.87884 -18.71401 -17.86068 -17.51486 -16.96958 -16.83923 -16.71718 -16.45032 -16.30301 -15.96986 -15.82634 -15.39101 -15.37032 -15.16911 -14.78011 -14.70960 -14.24819 -14.08697 -13.86734 -13.68320 -13.55231 -13.35367 -13.09845 -13.03924 -12.90394 -12.71128 -12.62622 -12.40436 -12.28425 -12.12658 -11.92020 -11.81783 -11.76118 -11.49418 -11.38015 -11.31673 -10.95442 -10.62190 -10.32186 -10.21837 -9.99715 -9.33591 -8.45831 -5.93891 1.33325 1.38178 1.42586 1.54659 1.94024 2.07264 2.29255 2.31575 2.84923 2.96260 3.22033 3.30862 3.36566 3.45825 3.54849 3.66652 3.91603 3.97889 4.01721 4.09961 4.29623 4.30930 4.36382 4.38515 4.47730 4.52994 4.60100 4.60391 4.63525 4.65912 4.71400 4.73586 4.83814 4.86855 4.93585 5.06961 5.10566 5.15141 5.22145 5.33153 5.42369 5.51462 5.57399 5.67730 5.88466 6.09347 6.30427 6.33893 6.61612 7.03024 7.14468 7.58346 8.13873 8.71417 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008872 B = 0.003079 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3155.241168 B = 9091.167934 C =11584.339306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.139 4.139 4 C 0.088 3.912 5 H 0.070 0.930 6 C 0.119 3.881 7 N -0.716 5.716 8 C 0.560 3.440 9 O -0.576 6.576 10 C -0.229 4.229 11 C -0.079 4.079 12 C -0.160 4.160 13 H 0.123 0.877 14 C 0.068 3.932 15 O -0.397 6.397 16 C 0.085 3.915 17 N -0.674 5.674 18 C 0.065 3.935 19 C 0.438 3.562 20 O -0.622 6.622 21 N -0.572 5.572 22 C -0.332 4.332 23 H 0.077 0.923 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.989 3.011 27 H -0.270 1.270 28 H -0.272 1.272 29 H -0.275 1.275 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.407 0.593 40 H 0.115 0.885 41 H 0.134 0.866 42 H 0.109 0.891 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.342 0.658 47 H 0.103 0.897 48 H 0.073 0.927 49 H 0.397 0.603 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.601 1.033 12.547 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 C -0.197 4.197 4 C -0.022 4.022 5 H 0.088 0.912 6 C -0.004 4.004 7 N -0.368 5.368 8 C 0.348 3.652 9 O -0.456 6.456 10 C -0.233 4.233 11 C -0.116 4.116 12 C -0.179 4.179 13 H 0.141 0.859 14 C -0.007 4.007 15 O -0.316 6.316 16 C 0.008 3.992 17 N -0.309 5.309 18 C -0.067 4.067 19 C 0.226 3.774 20 O -0.509 6.509 21 N -0.209 5.209 22 C -0.462 4.462 23 H 0.095 0.905 24 C -0.211 4.211 25 N -0.560 5.560 26 Si 0.813 3.187 27 H -0.195 1.195 28 H -0.196 1.196 29 H -0.200 1.200 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.243 0.757 40 H 0.133 0.867 41 H 0.152 0.848 42 H 0.127 0.873 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.103 0.897 46 H 0.162 0.838 47 H 0.122 0.878 48 H 0.091 0.909 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.420 2.703 12.373 21.538 hybrid contribution 0.867 -1.177 -0.155 1.470 sum -16.554 1.526 12.218 20.631 Atomic orbital electron populations 1.21887 0.93486 1.02544 1.02442 1.21044 0.96048 0.96340 0.96535 1.21740 1.01103 0.95778 1.01049 1.21858 0.86596 0.99140 0.94562 0.91189 1.21710 0.98682 0.97632 0.82372 1.45937 1.48996 1.36297 1.05569 1.19431 0.79890 0.81922 0.83997 1.90678 1.38296 1.29520 1.87135 1.23305 0.97402 1.11170 0.91373 1.23319 0.99186 0.94667 0.94385 1.24423 1.00666 1.00993 0.91807 0.85938 1.23217 0.83523 1.04401 0.89598 1.89093 1.46336 1.69277 1.26907 1.22795 0.87980 0.96291 0.92142 1.60033 1.06739 1.45047 1.19048 1.21610 0.90287 0.93675 1.01153 1.20866 0.90601 0.83024 0.82921 1.90515 1.72809 1.39161 1.48382 1.41913 1.06373 1.26412 1.46246 1.19634 0.82696 1.12425 1.31403 0.90473 1.25970 1.04672 0.94859 0.95563 1.69662 1.38078 1.15230 1.33047 0.84985 0.77229 0.78375 0.78122 1.19544 1.19649 1.20010 0.92391 0.91718 0.91594 0.90967 0.93663 0.92535 0.93130 0.91767 0.89473 0.75713 0.86685 0.84752 0.87274 0.89010 0.88823 0.89654 0.83769 0.87850 0.90892 0.76957 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.84 71.98 0.64 -1.61 16 2 C -0.08 -1.62 2.83 -10.79 -0.03 -1.65 16 3 C -0.14 -3.28 8.69 71.98 0.63 -2.66 16 4 C 0.09 1.85 2.02 44.92 0.09 1.94 16 5 H 0.07 1.24 7.80 -2.39 -0.02 1.22 16 6 C 0.12 2.61 4.59 86.38 0.40 3.00 16 7 N -0.72 -15.56 4.88 -463.07 -2.26 -17.82 16 8 C 0.56 14.07 7.42 87.66 0.65 14.72 16 9 O -0.58 -18.57 16.85 -3.04 -0.05 -18.62 16 10 C -0.23 -4.47 2.84 -51.91 -0.15 -4.62 16 11 C -0.08 -0.98 9.89 30.60 0.30 -0.68 16 12 C -0.16 -2.70 6.90 -9.78 -0.07 -2.77 16 13 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 14 C 0.07 1.09 7.45 72.48 0.54 1.64 16 15 O -0.40 -9.70 11.62 -148.98 -1.73 -11.43 16 16 C 0.08 1.77 7.09 72.48 0.51 2.28 16 17 N -0.67 -19.32 5.16 -495.59 -2.56 -21.88 16 18 C 0.06 2.02 5.96 85.56 0.51 2.53 16 19 C 0.44 19.89 7.82 87.66 0.69 20.57 16 20 O -0.62 -33.50 15.78 -3.07 -0.05 -33.55 16 21 N -0.57 -28.32 5.29 -306.98 -1.62 -29.94 16 22 C -0.33 -18.51 9.68 84.04 0.81 -17.69 16 23 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 24 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 25 N -0.92 -48.62 13.05 21.66 0.28 -48.33 16 26 Si 0.99 42.49 29.55 68.60 2.03 44.52 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 29 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 30 H 0.06 0.89 6.54 -2.39 -0.02 0.87 16 31 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 1.54 7.45 -2.39 -0.02 1.52 16 34 H 0.04 1.34 7.60 -2.39 -0.02 1.32 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 1.17 6.32 -2.39 -0.02 1.15 16 37 H 0.06 1.69 6.17 -2.39 -0.01 1.67 16 38 H 0.09 1.75 6.71 -2.39 -0.02 1.73 16 39 H 0.41 7.78 7.17 -92.71 -0.67 7.11 16 40 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.09 2.03 7.88 -2.38 -0.02 2.02 16 46 H 0.34 10.38 6.41 -89.69 -0.58 9.81 16 47 H 0.10 2.95 7.44 -2.39 -0.02 2.94 16 48 H 0.07 1.88 8.05 -2.39 -0.02 1.86 16 49 H 0.40 18.56 7.90 -92.71 -0.73 17.82 16 50 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -73.34 403.24 -0.96 -74.30 By element: Atomic # 1 Polarization: 48.84 SS G_CDS: -0.99 Total: 47.85 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 5.99 Total: 14.91 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -6.16 Total: -117.98 kcal Atomic # 8 Polarization: -61.78 SS G_CDS: -1.83 Total: -63.61 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -73.34 -0.96 -74.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732560505.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.128 kcal (2) G-P(sol) polarization free energy of solvation -73.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds