Wall clock time and date at job start Sat Apr 11 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46902 * 2 1 4 4 C 1.52990 * 109.46971 * 120.00137 * 2 1 3 5 5 C 1.50703 * 109.47398 * 65.00163 * 4 2 1 6 6 O 1.21283 * 119.99488 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00290 * 180.02562 * 5 4 2 8 8 C 1.46498 * 119.99828 * 180.27728 * 7 5 4 9 9 H 1.09005 * 110.73453 * 36.68486 * 8 7 5 10 10 C 1.54469 * 110.82564 * 273.26580 * 8 7 5 11 11 O 1.43516 * 107.57721 * 220.41550 * 10 8 7 12 12 C 1.42551 * 109.63876 * 359.35617 * 11 10 8 13 13 C 1.52942 * 116.15299 * 253.35829 * 12 11 10 14 14 N 1.48142 * 85.87331 * 218.82397 * 13 12 11 15 15 C 1.46904 * 111.00345 * 136.93751 * 14 13 12 16 16 C 1.50696 * 109.47027 * 90.44440 * 15 14 13 17 17 O 1.21294 * 120.00336 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99761 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99878 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99844 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99760 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00375 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99686 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47448 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46912 * 119.99878 * 23 21 19 26 26 H 1.48496 * 109.46945 * 239.99860 * 23 21 19 27 27 C 1.48147 * 90.93396 * 23.97326 * 14 13 12 28 28 C 1.54007 * 106.48133 * 23.05153 * 12 11 10 29 29 H 1.09001 * 109.46850 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46928 * 299.99922 * 1 2 3 31 31 H 1.09001 * 109.46842 * 59.99698 * 1 2 3 32 32 H 1.08997 * 109.46547 * 240.00691 * 2 1 3 33 33 H 1.09002 * 109.47224 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47568 * 300.00381 * 3 2 1 35 35 H 1.09006 * 109.47224 * 60.00394 * 3 2 1 36 36 H 1.08998 * 109.47508 * 304.99963 * 4 2 1 37 37 H 1.09002 * 109.47337 * 185.00248 * 4 2 1 38 38 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 39 39 H 1.09000 * 109.83076 * 339.92968 * 10 8 7 40 40 H 1.08998 * 109.82891 * 100.80837 * 10 8 7 41 41 H 1.09005 * 113.81432 * 333.06369 * 13 12 11 42 42 H 1.09002 * 113.80848 * 104.58617 * 13 12 11 43 43 H 1.08998 * 109.47146 * 210.44673 * 15 14 13 44 44 H 1.09004 * 109.46661 * 330.44973 * 15 14 13 45 45 H 0.96996 * 120.00036 * 359.97438 * 18 16 15 46 46 H 0.97002 * 120.00041 * 180.02562 * 22 21 19 47 47 H 1.08998 * 113.81361 * 221.79389 * 27 14 13 48 48 H 1.09005 * 113.81067 * 90.26231 * 27 14 13 49 49 H 1.09004 * 111.15139 * 206.95223 * 28 12 11 50 50 H 1.08990 * 111.15680 * 82.70842 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 -2.1733 1.1888 6 8 1.0110 -2.5901 0.2402 7 7 1.9845 -3.0085 2.1894 8 6 1.6022 -4.4214 2.1277 9 1 1.6598 -4.7925 1.1044 10 6 0.1872 -4.6334 2.7099 11 8 0.2127 -5.8432 3.4814 12 6 1.5149 -6.4203 3.4246 13 6 1.6591 -7.6752 2.5623 14 7 2.5655 -8.1708 3.6241 15 6 2.2974 -9.5827 3.9286 16 6 3.1566 -10.4574 3.0524 17 8 3.9178 -9.9542 2.2533 18 7 3.0792 -11.7989 3.1568 19 6 3.8613 -12.5947 2.3601 20 1 4.5391 -12.1466 1.6486 21 6 3.7819 -13.9777 2.4681 22 7 2.9576 -14.5229 3.3342 23 14 4.8470 -15.0620 1.3821 24 1 5.6829 -14.2095 0.4992 25 1 5.7259 -15.9037 2.2331 26 1 3.9792 -15.9348 0.5512 27 6 1.9239 -7.2817 4.6204 28 6 2.4856 -5.2752 3.0806 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6054 -0.2618 2.1369 37 1 3.1264 -0.6443 1.2951 38 1 2.4883 -2.6751 2.9482 39 1 -0.0792 -3.7922 3.3498 40 1 -0.5361 -4.7249 1.8996 41 1 0.7386 -8.2509 2.4654 42 1 2.1549 -7.4985 1.6077 43 1 2.5282 -9.7787 4.9756 44 1 1.2462 -9.8015 3.7410 45 1 2.4708 -12.2013 3.7961 46 1 2.9024 -15.4884 3.4099 47 1 2.6289 -6.7938 5.2934 48 1 1.0827 -7.7392 5.1413 49 1 3.3702 -5.6506 2.5660 50 1 2.7609 -4.7118 3.9720 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733791628.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:41 Heat of formation + Delta-G solvation = -86.739885 kcal Electronic energy + Delta-G solvation = -29351.370881 eV Core-core repulsion = 25186.532866 eV Total energy + Delta-G solvation = -4164.838015 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -41.16040 -40.07422 -38.33446 -37.18808 -36.02101 -34.86129 -33.86111 -31.48083 -31.15446 -30.15455 -28.18025 -27.43935 -26.96153 -26.20846 -24.81497 -22.74625 -22.47346 -21.08006 -20.24706 -19.35537 -19.18204 -17.89653 -17.59055 -17.05318 -16.38218 -16.07783 -15.95453 -15.64622 -15.20830 -15.05185 -14.64052 -14.45684 -14.22492 -14.00998 -13.93820 -13.80186 -13.42832 -13.23415 -12.91527 -12.69353 -12.61837 -12.36228 -12.26174 -12.07280 -11.95382 -11.86997 -11.55959 -11.48521 -11.28357 -11.23130 -11.12730 -11.06027 -10.98043 -10.61970 -10.32559 -10.19846 -10.02453 -9.59837 -9.48617 -9.42525 -8.79083 -8.18412 -7.93382 -6.39194 -3.79840 2.29300 2.70899 3.18008 3.28255 3.35531 3.52638 3.88420 3.94600 4.11349 4.23542 4.30143 4.36592 4.47547 4.49674 4.53443 4.75864 4.79772 4.90284 5.02587 5.07563 5.14971 5.18814 5.25101 5.25537 5.32210 5.37277 5.47125 5.52692 5.53388 5.57967 5.58278 5.63920 5.67623 5.73296 5.76350 5.78102 5.87664 5.97961 6.04809 6.05819 6.17104 6.28197 6.52325 6.88151 7.10379 7.11348 7.57751 7.88233 8.08933 8.64881 9.21170 9.57583 10.09851 10.78774 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023176 B = 0.001795 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.872148 B =15591.967864 C =16244.420065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.082 4.082 3 C -0.148 4.148 4 C -0.137 4.137 5 C 0.512 3.488 6 O -0.531 6.531 7 N -0.722 5.722 8 C 0.113 3.887 9 H 0.107 0.893 10 C 0.042 3.958 11 O -0.362 6.362 12 C 0.079 3.921 13 C 0.002 3.998 14 N -0.443 5.443 15 C 0.012 3.988 16 C 0.447 3.553 17 O -0.576 6.576 18 N -0.567 5.567 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.011 3.989 28 C -0.128 4.128 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.403 0.597 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.060 0.940 45 H 0.391 0.609 46 H 0.270 0.730 47 H 0.096 0.904 48 H 0.079 0.921 49 H 0.104 0.896 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.086 28.633 2.154 29.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.101 4.101 3 C -0.206 4.206 4 C -0.177 4.177 5 C 0.299 3.701 6 O -0.407 6.407 7 N -0.375 5.375 8 C 0.007 3.993 9 H 0.125 0.875 10 C -0.036 4.036 11 O -0.280 6.280 12 C 0.038 3.962 13 C -0.127 4.127 14 N -0.167 5.167 15 C -0.120 4.120 16 C 0.232 3.768 17 O -0.459 6.459 18 N -0.204 5.204 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.118 4.118 28 C -0.166 4.166 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.237 0.763 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.225 0.775 46 H 0.080 0.920 47 H 0.115 0.885 48 H 0.097 0.903 49 H 0.123 0.877 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.533 28.389 0.969 28.765 hybrid contribution -0.405 -0.910 0.442 1.090 sum -4.938 27.479 1.411 27.954 Atomic orbital electron populations 1.21967 0.94671 1.03419 1.01072 1.20873 0.96701 0.95367 0.97140 1.21866 1.00908 0.95753 1.02033 1.21793 1.03028 0.91738 1.01158 1.20836 0.78926 0.88448 0.81868 1.90702 1.39158 1.77845 1.33012 1.45988 1.58399 1.08964 1.24142 1.22579 0.93852 0.81113 1.01745 0.87541 1.23571 0.97089 0.87644 0.95252 1.88357 1.30380 1.38222 1.71057 1.23454 0.82549 0.92733 0.97445 1.24399 0.96173 0.94094 0.97994 1.68380 1.42696 1.02236 1.03374 1.22468 0.98800 0.89954 1.00774 1.19661 0.87063 0.82876 0.87197 1.90518 1.41666 1.73737 1.39972 1.41877 1.38232 1.04126 1.36207 1.19748 1.18743 0.87478 1.16722 0.87906 1.25250 0.97770 0.97269 0.97716 1.69621 1.37179 1.12040 1.35598 0.85808 0.79448 0.79593 0.79541 1.19249 1.20777 1.20792 1.24152 0.98195 0.94109 0.95345 1.23082 0.98816 0.95040 0.99638 0.90694 0.93395 0.92892 0.90326 0.92639 0.92323 0.92662 0.88831 0.88759 0.76265 0.91152 0.90612 0.90377 0.88574 0.89247 0.92201 0.77546 0.91978 0.88548 0.90298 0.87748 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.93 37.16 0.33 -0.83 16 2 C -0.08 -0.55 2.57 -90.62 -0.23 -0.78 16 3 C -0.15 -0.73 9.19 37.16 0.34 -0.39 16 4 C -0.14 -0.76 5.17 -27.89 -0.14 -0.90 16 5 C 0.51 4.45 7.55 -10.98 -0.08 4.37 16 6 O -0.53 -6.71 13.70 5.55 0.08 -6.63 16 7 N -0.72 -5.25 5.14 -51.78 -0.27 -5.51 16 8 C 0.11 1.08 3.29 -65.84 -0.22 0.86 16 9 H 0.11 1.23 7.70 -51.93 -0.40 0.83 16 10 C 0.04 0.44 7.57 37.93 0.29 0.73 16 11 O -0.36 -4.56 11.16 -35.23 -0.39 -4.95 16 12 C 0.08 0.96 1.47 -90.27 -0.13 0.83 16 13 C 0.00 0.04 7.45 -3.17 -0.02 0.01 16 14 N -0.44 -7.29 5.63 -244.99 -1.38 -8.67 16 15 C 0.01 0.22 5.28 -4.98 -0.03 0.19 16 16 C 0.45 10.75 7.82 -10.99 -0.09 10.66 16 17 O -0.58 -15.94 16.01 5.55 0.09 -15.85 16 18 N -0.57 -14.59 5.29 -10.96 -0.06 -14.65 16 19 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 20 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.81 13.05 55.50 0.72 -24.08 16 23 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 C 0.01 0.14 7.51 -3.17 -0.02 0.11 16 28 C -0.13 -1.25 6.02 -24.89 -0.15 -1.40 16 29 H 0.07 0.74 5.95 -51.93 -0.31 0.44 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.66 7.96 -51.93 -0.41 0.24 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.40 1.77 8.50 -40.82 -0.35 1.43 16 39 H 0.07 0.65 8.02 -51.93 -0.42 0.24 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.19 7.48 -51.93 -0.39 0.80 16 42 H 0.10 1.54 8.11 -51.93 -0.42 1.12 16 43 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 44 H 0.06 0.98 7.38 -51.93 -0.38 0.60 16 45 H 0.39 9.61 7.90 -40.82 -0.32 9.28 16 46 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.10 1.04 8.11 -51.93 -0.42 0.62 16 48 H 0.08 0.94 7.92 -51.93 -0.41 0.53 16 49 H 0.10 1.15 8.05 -51.93 -0.42 0.73 16 50 H 0.09 0.67 7.98 -51.93 -0.41 0.25 16 LS Contribution 405.61 15.07 6.11 6.11 Total: -1.00 -34.20 405.61 -8.90 -43.10 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -8.38 Total: 9.46 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -0.40 Total: 5.40 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.98 Total: -52.91 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.23 Total: -27.43 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.20 -8.90 -43.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733791628.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.639 kcal (2) G-P(sol) polarization free energy of solvation -34.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds