Wall clock time and date at job start Sat Apr 11 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46902 * 2 1 4 4 C 1.52990 * 109.46971 * 120.00137 * 2 1 3 5 5 C 1.50703 * 109.47398 * 65.00163 * 4 2 1 6 6 O 1.21283 * 119.99488 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00290 * 180.02562 * 5 4 2 8 8 C 1.46498 * 119.99828 * 180.27728 * 7 5 4 9 9 H 1.09005 * 110.73453 * 36.68486 * 8 7 5 10 10 C 1.54469 * 110.82564 * 273.26580 * 8 7 5 11 11 O 1.43516 * 107.57721 * 220.41550 * 10 8 7 12 12 C 1.42551 * 109.63876 * 359.35617 * 11 10 8 13 13 C 1.52942 * 116.15299 * 253.35829 * 12 11 10 14 14 N 1.48142 * 85.87331 * 218.82397 * 13 12 11 15 15 C 1.46904 * 111.00345 * 136.93751 * 14 13 12 16 16 C 1.50696 * 109.47027 * 90.44440 * 15 14 13 17 17 O 1.21294 * 120.00336 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99761 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99878 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99844 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99760 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00375 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99686 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47448 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46912 * 119.99878 * 23 21 19 26 26 H 1.48496 * 109.46945 * 239.99860 * 23 21 19 27 27 C 1.48147 * 90.93396 * 23.97326 * 14 13 12 28 28 C 1.54007 * 106.48133 * 23.05153 * 12 11 10 29 29 H 1.09001 * 109.46850 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46928 * 299.99922 * 1 2 3 31 31 H 1.09001 * 109.46842 * 59.99698 * 1 2 3 32 32 H 1.08997 * 109.46547 * 240.00691 * 2 1 3 33 33 H 1.09002 * 109.47224 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47568 * 300.00381 * 3 2 1 35 35 H 1.09006 * 109.47224 * 60.00394 * 3 2 1 36 36 H 1.08998 * 109.47508 * 304.99963 * 4 2 1 37 37 H 1.09002 * 109.47337 * 185.00248 * 4 2 1 38 38 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 39 39 H 1.09000 * 109.83076 * 339.92968 * 10 8 7 40 40 H 1.08998 * 109.82891 * 100.80837 * 10 8 7 41 41 H 1.09005 * 113.81432 * 333.06369 * 13 12 11 42 42 H 1.09002 * 113.80848 * 104.58617 * 13 12 11 43 43 H 1.08998 * 109.47146 * 210.44673 * 15 14 13 44 44 H 1.09004 * 109.46661 * 330.44973 * 15 14 13 45 45 H 0.96996 * 120.00036 * 359.97438 * 18 16 15 46 46 H 0.97002 * 120.00041 * 180.02562 * 22 21 19 47 47 H 1.08998 * 113.81361 * 221.79389 * 27 14 13 48 48 H 1.09005 * 113.81067 * 90.26231 * 27 14 13 49 49 H 1.09004 * 111.15139 * 206.95223 * 28 12 11 50 50 H 1.08990 * 111.15680 * 82.70842 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 -2.1733 1.1888 6 8 1.0110 -2.5901 0.2402 7 7 1.9845 -3.0085 2.1894 8 6 1.6022 -4.4214 2.1277 9 1 1.6598 -4.7925 1.1044 10 6 0.1872 -4.6334 2.7099 11 8 0.2127 -5.8432 3.4814 12 6 1.5149 -6.4203 3.4246 13 6 1.6591 -7.6752 2.5623 14 7 2.5655 -8.1708 3.6241 15 6 2.2974 -9.5827 3.9286 16 6 3.1566 -10.4574 3.0524 17 8 3.9178 -9.9542 2.2533 18 7 3.0792 -11.7989 3.1568 19 6 3.8613 -12.5947 2.3601 20 1 4.5391 -12.1466 1.6486 21 6 3.7819 -13.9777 2.4681 22 7 2.9576 -14.5229 3.3342 23 14 4.8470 -15.0620 1.3821 24 1 5.6829 -14.2095 0.4992 25 1 5.7259 -15.9037 2.2331 26 1 3.9792 -15.9348 0.5512 27 6 1.9239 -7.2817 4.6204 28 6 2.4856 -5.2752 3.0806 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6054 -0.2618 2.1369 37 1 3.1264 -0.6443 1.2951 38 1 2.4883 -2.6751 2.9482 39 1 -0.0792 -3.7922 3.3498 40 1 -0.5361 -4.7249 1.8996 41 1 0.7386 -8.2509 2.4654 42 1 2.1549 -7.4985 1.6077 43 1 2.5282 -9.7787 4.9756 44 1 1.2462 -9.8015 3.7410 45 1 2.4708 -12.2013 3.7961 46 1 2.9024 -15.4884 3.4099 47 1 2.6289 -6.7938 5.2934 48 1 1.0827 -7.7392 5.1413 49 1 3.3702 -5.6506 2.5660 50 1 2.7609 -4.7118 3.9720 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733791628.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:40 Heat of formation + Delta-G solvation = -114.170830 kcal Electronic energy + Delta-G solvation = -29352.560376 eV Core-core repulsion = 25186.532866 eV Total energy + Delta-G solvation = -4166.027510 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.15611 -40.88413 -39.96579 -38.47647 -36.60918 -35.93078 -35.64317 -33.31674 -32.33072 -31.27232 -28.84458 -28.13330 -27.93375 -27.33068 -26.58838 -24.06097 -23.21432 -21.85617 -21.04573 -20.79314 -20.30948 -19.90537 -18.33089 -17.96803 -17.71186 -17.44539 -16.80839 -16.63300 -16.42940 -16.29664 -15.92613 -15.67163 -15.45689 -15.28196 -14.80386 -14.70801 -14.52939 -14.39941 -14.14714 -13.84487 -13.54986 -13.33221 -13.25648 -13.05593 -12.94749 -12.89081 -12.81746 -12.64704 -12.48428 -12.40611 -12.13343 -12.06617 -12.02859 -11.74904 -11.66896 -11.55999 -11.50998 -10.75093 -10.58213 -10.40366 -10.16253 -10.01568 -9.78446 -8.47402 -5.96149 1.35628 1.40563 1.54892 1.63218 2.04259 2.05090 2.27096 2.54432 2.82091 3.16923 3.19970 3.36513 3.46343 3.62461 3.77034 3.89415 3.92930 4.00096 4.04557 4.10058 4.18119 4.32864 4.39131 4.42022 4.51496 4.56781 4.61186 4.68502 4.71096 4.73828 4.75648 4.76011 4.84599 4.87011 4.89914 4.95058 5.06516 5.13959 5.28220 5.33008 5.37164 5.40262 5.50705 5.54500 5.81144 5.94407 6.03901 6.54297 6.59958 7.12509 7.27142 7.55841 8.12212 8.70313 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023176 B = 0.001795 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.872148 B =15591.967864 C =16244.420065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.129 4.129 5 C 0.507 3.493 6 O -0.578 6.578 7 N -0.707 5.707 8 C 0.120 3.880 9 H 0.078 0.922 10 C 0.043 3.957 11 O -0.372 6.372 12 C 0.088 3.912 13 C -0.009 4.009 14 N -0.467 5.467 15 C 0.025 3.975 16 C 0.442 3.558 17 O -0.618 6.618 18 N -0.576 5.576 19 C -0.333 4.333 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.275 1.275 25 H -0.269 1.269 26 H -0.271 1.271 27 C 0.020 3.980 28 C -0.118 4.118 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.421 0.579 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.077 0.923 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.122 0.878 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.724 30.308 4.233 30.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.103 4.103 3 C -0.200 4.200 4 C -0.169 4.169 5 C 0.296 3.704 6 O -0.457 6.457 7 N -0.362 5.362 8 C 0.013 3.987 9 H 0.097 0.903 10 C -0.034 4.034 11 O -0.290 6.290 12 C 0.048 3.952 13 C -0.139 4.139 14 N -0.191 5.191 15 C -0.107 4.107 16 C 0.230 3.770 17 O -0.503 6.503 18 N -0.214 5.214 19 C -0.463 4.463 20 H 0.095 0.905 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.199 1.199 25 H -0.194 1.194 26 H -0.196 1.196 27 C -0.108 4.108 28 C -0.155 4.155 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.259 0.741 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.132 0.868 44 H 0.094 0.906 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.140 0.860 48 H 0.108 0.892 49 H 0.109 0.891 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.177 30.081 3.103 30.528 hybrid contribution -0.568 -1.399 -0.236 1.529 sum -4.745 28.681 2.867 29.212 Atomic orbital electron populations 1.21930 0.95586 1.01713 1.01718 1.20867 0.95970 0.96599 0.96902 1.21816 1.01442 0.94216 1.02524 1.21832 1.04543 0.88997 1.01493 1.21504 0.77993 0.89789 0.81158 1.90698 1.41312 1.78816 1.34882 1.45838 1.58051 1.07693 1.24573 1.22283 0.93627 0.82520 1.00240 0.90343 1.23618 0.97180 0.87506 0.95131 1.88342 1.30573 1.39005 1.71105 1.23304 0.83237 0.92444 0.96235 1.24428 0.95503 0.96332 0.97594 1.68322 1.43985 1.01596 1.05223 1.22345 0.98055 0.89915 1.00356 1.20760 0.86648 0.82762 0.86864 1.90483 1.43570 1.74436 1.41860 1.41948 1.38311 1.04828 1.36268 1.19692 1.20052 0.88639 1.17908 0.90473 1.26030 0.98676 0.97832 0.98719 1.69677 1.37623 1.12748 1.36104 0.84874 0.77914 0.77655 0.77896 1.19924 1.19428 1.19626 1.24238 0.98791 0.92842 0.94935 1.23034 0.97510 0.94297 1.00699 0.93482 0.91909 0.93090 0.92797 0.91724 0.92689 0.91345 0.86125 0.86417 0.74093 0.89185 0.92005 0.90983 0.90670 0.86766 0.90554 0.77030 0.91307 0.86012 0.89210 0.89087 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.93 71.99 0.64 -1.62 16 2 C -0.08 -1.05 2.57 -10.79 -0.03 -1.07 16 3 C -0.14 -1.11 9.19 71.98 0.66 -0.45 16 4 C -0.13 -1.12 5.17 29.85 0.15 -0.96 16 5 C 0.51 8.34 7.55 87.66 0.66 9.00 16 6 O -0.58 -15.17 13.70 -3.04 -0.04 -15.21 16 7 N -0.71 -9.00 5.14 -436.13 -2.24 -11.24 16 8 C 0.12 2.23 3.29 46.35 0.15 2.38 16 9 H 0.08 1.93 7.70 -2.38 -0.02 1.92 16 10 C 0.04 0.87 7.57 72.48 0.55 1.42 16 11 O -0.37 -8.85 11.16 -148.98 -1.66 -10.51 16 12 C 0.09 2.05 1.47 -10.45 -0.02 2.03 16 13 C -0.01 -0.29 7.45 86.04 0.64 0.35 16 14 N -0.47 -15.02 5.63 -934.36 -5.26 -20.28 16 15 C 0.03 0.88 5.28 85.55 0.45 1.33 16 16 C 0.44 21.71 7.82 87.66 0.69 22.40 16 17 O -0.62 -35.42 16.01 -3.07 -0.05 -35.47 16 18 N -0.58 -30.27 5.29 -306.98 -1.62 -31.89 16 19 C -0.33 -19.36 9.68 84.04 0.81 -18.55 16 20 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 21 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 22 N -0.92 -50.30 13.05 21.66 0.28 -50.02 16 23 Si 0.99 43.69 29.55 68.60 2.03 45.71 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 27 C 0.02 0.45 7.51 86.04 0.65 1.09 16 28 C -0.12 -2.10 6.02 31.79 0.19 -1.91 16 29 H 0.05 0.98 5.95 -2.39 -0.01 0.96 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.93 7.96 -2.39 -0.02 0.91 16 33 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 36 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.42 2.29 8.50 -92.71 -0.79 1.50 16 39 H 0.09 1.46 8.02 -2.39 -0.02 1.45 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 2.26 7.48 -2.38 -0.02 2.24 16 42 H 0.07 2.58 8.11 -2.39 -0.02 2.56 16 43 H 0.11 3.45 8.08 -2.39 -0.02 3.43 16 44 H 0.08 2.44 7.38 -2.38 -0.02 2.42 16 45 H 0.40 19.68 7.90 -92.71 -0.73 18.95 16 46 H 0.28 14.14 8.31 -92.71 -0.77 13.36 16 47 H 0.12 2.15 8.11 -2.39 -0.02 2.13 16 48 H 0.09 1.86 7.92 -2.38 -0.02 1.84 16 49 H 0.09 1.94 8.05 -2.39 -0.02 1.92 16 50 H 0.12 1.37 7.98 -2.39 -0.02 1.35 16 Total: -1.00 -77.43 405.61 -2.46 -79.89 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: -0.57 Total: 33.80 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 6.68 Total: 15.22 kcal Atomic # 7 Polarization: -104.59 SS G_CDS: -8.84 Total: -113.44 kcal Atomic # 8 Polarization: -59.44 SS G_CDS: -1.75 Total: -61.19 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -77.43 -2.46 -79.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733791628.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.276 kcal (2) G-P(sol) polarization free energy of solvation -77.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds