Wall clock time and date at job start Sat Apr 11 2020 05:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 120.00011 * 2 1 4 4 C 1.52992 * 109.47448 * 125.00331 * 3 2 1 5 5 C 1.50702 * 109.47448 * 179.97438 * 4 3 2 6 6 O 1.21278 * 119.99980 * 0.02562 * 5 4 3 7 7 N 1.34771 * 119.99850 * 180.02562 * 5 4 3 8 8 C 1.46926 * 120.63379 * 0.02562 * 7 5 4 9 9 C 1.53191 * 108.77405 * 233.58738 * 8 7 5 10 10 C 1.53042 * 109.31369 * 305.36094 * 9 8 7 11 11 C 1.53038 * 109.53449 * 61.36964 * 10 9 8 12 12 C 1.53001 * 109.49586 * 178.68492 * 11 10 9 13 13 O 1.42908 * 109.47093 * 185.28366 * 12 11 10 14 14 N 1.46895 * 109.50038 * 58.61772 * 11 10 9 15 15 C 1.46907 * 111.00269 * 64.74616 * 14 11 10 16 16 C 1.50697 * 109.47114 * 185.24558 * 15 14 11 17 17 O 1.21284 * 120.00273 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99614 * 179.97438 * 16 15 14 19 19 C 1.37093 * 120.00027 * 179.97438 * 18 16 15 20 20 H 1.08001 * 119.99857 * 0.02562 * 19 18 16 21 21 C 1.38956 * 120.00065 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99761 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00170 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.46941 * 89.99387 * 23 21 19 25 25 H 1.48495 * 109.47130 * 209.99802 * 23 21 19 26 26 H 1.48507 * 109.46899 * 330.00031 * 23 21 19 27 27 C 1.46929 * 120.62917 * 179.97438 * 7 5 4 28 28 H 1.07994 * 120.00210 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99925 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00633 * 180.02562 * 2 1 3 31 31 H 1.09005 * 109.46796 * 5.00276 * 3 2 1 32 32 H 1.09003 * 109.47434 * 245.01060 * 3 2 1 33 33 H 1.09005 * 109.47167 * 60.00172 * 4 3 2 34 34 H 1.09003 * 109.47399 * 300.00751 * 4 3 2 35 35 H 1.09000 * 109.58885 * 113.80068 * 8 7 5 36 36 H 1.08996 * 109.58706 * 353.37203 * 8 7 5 37 37 H 1.09002 * 109.49646 * 185.41198 * 9 8 7 38 38 H 1.08997 * 109.53056 * 65.33178 * 9 8 7 39 39 H 1.08998 * 109.46136 * 301.34707 * 10 9 8 40 40 H 1.09002 * 109.44786 * 181.38147 * 10 9 8 41 41 H 1.09001 * 109.47024 * 305.27796 * 12 11 10 42 42 H 1.08999 * 109.47447 * 65.28021 * 12 11 10 43 43 H 0.96694 * 113.99799 * 180.02562 * 13 12 11 44 44 H 1.00903 * 111.00156 * 188.69368 * 14 11 10 45 45 H 1.09005 * 109.46507 * 305.24895 * 15 14 11 46 46 H 1.08997 * 109.46940 * 65.24187 * 15 14 11 47 47 H 0.97005 * 119.99858 * 0.02562 * 18 16 15 48 48 H 0.96995 * 119.99648 * 180.02562 * 22 21 19 49 49 H 1.09000 * 109.58464 * 6.62240 * 27 7 5 50 50 H 1.09006 * 109.58711 * 246.20117 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1815 5 6 3.7890 2.6380 1.1811 6 8 3.5704 3.4644 0.3208 7 7 4.7062 2.8865 2.1368 8 6 4.9825 1.8950 3.1853 9 6 4.8326 2.5688 4.5529 10 6 5.7292 3.8079 4.6077 11 6 5.2941 4.8024 3.5290 12 6 6.1699 6.0547 3.6059 13 8 5.6858 7.0320 2.6824 14 7 3.8888 5.1731 3.7419 15 6 3.7213 5.8965 5.0096 16 6 2.2556 6.1462 5.2556 17 8 1.4317 5.7602 4.4537 18 7 1.8605 6.7986 6.3667 19 6 0.5272 7.0264 6.5904 20 1 -0.2065 6.6826 5.8763 21 6 0.1198 7.6985 7.7362 22 7 -1.1583 7.9163 7.9508 23 14 1.3887 8.2925 8.9717 24 1 1.8184 9.6690 8.6169 25 1 0.7922 8.2950 10.3315 26 1 2.5645 7.3856 8.9484 27 6 5.4497 4.1538 2.1494 28 1 -0.5400 0.9352 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9352 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6212 1.4028 -0.9315 33 1 3.7401 0.5066 1.0919 34 1 2.4774 1.2355 2.1130 35 1 5.9991 1.5181 3.0731 36 1 4.2740 1.0707 3.1045 37 1 5.1280 1.8711 5.3365 38 1 3.7941 2.8644 4.7016 39 1 6.7647 3.5147 4.4350 40 1 5.6429 4.2752 5.5886 41 1 6.1346 6.4612 4.6167 42 1 7.1982 5.7950 3.3544 43 1 6.1949 7.8540 2.6769 44 1 3.5363 5.7151 2.9672 45 1 4.1302 5.2998 5.8250 46 1 4.2484 6.8490 4.9567 47 1 2.5196 7.1077 7.0079 48 1 -1.4426 8.3859 8.7505 49 1 5.0495 4.8198 1.3850 50 1 6.5044 3.9606 1.9529 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733811413.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:47 Heat of formation + Delta-G solvation = -93.248248 kcal Electronic energy + Delta-G solvation = -31028.176677 eV Core-core repulsion = 26863.056439 eV Total energy + Delta-G solvation = -4165.120239 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.55492 -38.94308 -37.94863 -36.51469 -35.39704 -34.66954 -33.84484 -32.07311 -31.64445 -31.26622 -30.23477 -26.63055 -26.41588 -25.74429 -24.08017 -23.37032 -22.21471 -19.90369 -19.61098 -19.23392 -18.75288 -18.30789 -17.49126 -17.06450 -16.54387 -15.88975 -15.65822 -15.52235 -15.08690 -14.91721 -14.72009 -14.56901 -14.19111 -14.01247 -13.68121 -13.55599 -13.41328 -13.06330 -12.90572 -12.71852 -12.49053 -12.35234 -12.26628 -12.04441 -11.96421 -11.73600 -11.57372 -11.18014 -11.12505 -11.08549 -11.02366 -10.84430 -10.60438 -10.55985 -10.18510 -9.94156 -9.70142 -9.52685 -9.38444 -8.57647 -8.50198 -8.13820 -7.99473 -6.27127 -3.78036 2.17666 2.75903 3.02911 3.05274 3.07456 3.15542 3.80313 3.84466 4.12484 4.25634 4.42792 4.63098 4.64400 4.83258 4.87674 4.92903 4.95462 5.05135 5.08814 5.16819 5.20255 5.21106 5.23661 5.29044 5.36477 5.42651 5.49183 5.54984 5.64824 5.71355 5.73629 5.80564 5.89756 5.90207 5.90878 5.99224 6.04921 6.12818 6.38633 6.50960 6.55136 6.69811 7.19956 7.42807 7.46550 7.63089 7.71803 8.19848 8.30788 8.65217 9.00260 9.47308 9.89781 10.86390 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010062 B = 0.003352 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.182621 B = 8352.386044 C =10051.177783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C -0.080 4.080 4 C -0.133 4.133 5 C 0.521 3.479 6 O -0.541 6.541 7 N -0.601 5.601 8 C 0.111 3.889 9 C -0.130 4.130 10 C -0.106 4.106 11 C 0.103 3.897 12 C 0.045 3.955 13 O -0.565 6.565 14 N -0.639 5.639 15 C 0.045 3.955 16 C 0.454 3.546 17 O -0.559 6.559 18 N -0.595 5.595 19 C -0.302 4.302 20 H 0.119 0.881 21 C 0.040 3.960 22 N -0.884 5.884 23 Si 0.880 3.120 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.131 3.869 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.380 0.620 44 H 0.359 0.641 45 H 0.084 0.916 46 H 0.045 0.955 47 H 0.369 0.631 48 H 0.272 0.728 49 H 0.099 0.901 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.531 -12.999 -8.134 24.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.175 4.175 3 C -0.117 4.117 4 C -0.173 4.173 5 C 0.310 3.690 6 O -0.418 6.418 7 N -0.334 5.334 8 C -0.012 4.012 9 C -0.168 4.168 10 C -0.144 4.144 11 C 0.010 3.990 12 C -0.035 4.035 13 O -0.370 6.370 14 N -0.272 5.272 15 C -0.088 4.088 16 C 0.240 3.760 17 O -0.440 6.440 18 N -0.235 5.235 19 C -0.431 4.431 20 H 0.136 0.864 21 C -0.162 4.162 22 N -0.524 5.524 23 Si 0.706 3.294 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.196 1.196 27 C 0.008 3.992 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.226 0.774 44 H 0.180 0.820 45 H 0.102 0.898 46 H 0.063 0.937 47 H 0.201 0.799 48 H 0.083 0.917 49 H 0.118 0.882 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.032 -13.822 -8.883 24.395 hybrid contribution 1.804 1.898 1.404 2.971 sum 19.836 -11.924 -7.479 24.322 Atomic orbital electron populations 1.23920 0.96054 1.02005 1.00725 1.22938 0.96087 0.98186 1.00314 1.20508 0.97953 0.95582 0.97687 1.21621 0.98794 0.95416 1.01457 1.20590 0.78771 0.88926 0.80734 1.90691 1.65058 1.48249 1.37752 1.47838 1.40024 1.17666 1.27828 1.21708 1.00915 0.91105 0.87458 1.21810 1.02884 0.96227 0.95910 1.21526 0.98810 0.95823 0.98193 1.21406 0.89017 0.92513 0.96094 1.22948 0.97208 0.90613 0.92766 1.86503 1.59198 1.28536 1.62764 1.60182 1.14062 1.48389 1.04552 1.21759 0.96115 0.97029 0.93853 1.19723 0.89531 0.83257 0.83537 1.90581 1.53960 1.53400 1.46033 1.42205 1.08169 1.52640 1.20465 1.19430 0.81857 1.34386 1.07410 0.86351 1.25025 0.96126 0.97635 0.97456 1.69624 1.13768 1.41295 1.27718 0.86674 0.81276 0.79542 0.81869 1.19757 1.20242 1.19603 1.21488 0.95336 0.85637 0.96749 0.88284 0.88617 0.87571 0.90412 0.90515 0.89316 0.88510 0.91895 0.89752 0.91184 0.89050 0.91677 0.91308 0.93023 0.93502 0.77354 0.81969 0.89827 0.93729 0.79902 0.91706 0.88228 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 14.32 29.01 0.42 -1.45 16 2 C -0.16 -1.51 9.52 -36.02 -0.34 -1.86 16 3 C -0.08 -0.91 4.95 -27.89 -0.14 -1.04 16 4 C -0.13 -1.41 4.03 -27.89 -0.11 -1.52 16 5 C 0.52 7.27 7.70 -10.99 -0.08 7.19 16 6 O -0.54 -9.69 15.39 5.56 0.09 -9.61 16 7 N -0.60 -7.14 2.89 -172.74 -0.50 -7.64 16 8 C 0.11 0.97 6.34 -3.71 -0.02 0.95 16 9 C -0.13 -1.28 5.93 -26.61 -0.16 -1.43 16 10 C -0.11 -1.00 4.43 -26.69 -0.12 -1.12 16 11 C 0.10 1.20 0.39 -131.46 -0.05 1.15 16 12 C 0.05 0.45 5.22 37.16 0.19 0.64 16 13 O -0.56 -6.38 12.73 -35.23 -0.45 -6.83 16 14 N -0.64 -10.23 4.64 -101.07 -0.47 -10.70 16 15 C 0.05 0.76 5.29 -4.97 -0.03 0.73 16 16 C 0.45 10.55 7.83 -10.99 -0.09 10.46 16 17 O -0.56 -15.54 15.89 5.55 0.09 -15.46 16 18 N -0.59 -14.41 5.09 -10.96 -0.06 -14.47 16 19 C -0.30 -8.70 10.16 -14.93 -0.15 -8.86 16 20 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 21 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -26.20 13.96 55.50 0.77 -25.42 16 23 Si 0.88 19.56 27.74 -169.99 -4.71 14.85 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 27 C 0.13 1.58 5.09 -3.68 -0.02 1.56 16 28 H 0.10 1.04 7.84 -52.49 -0.41 0.63 16 29 H 0.10 0.79 8.06 -52.48 -0.42 0.36 16 30 H 0.11 0.83 8.06 -52.49 -0.42 0.40 16 31 H 0.08 1.06 7.75 -51.93 -0.40 0.66 16 32 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.09 0.69 7.94 -51.93 -0.41 0.27 16 34 H 0.10 1.02 7.69 -51.93 -0.40 0.62 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.64 5.93 -51.93 -0.31 0.33 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.09 1.24 7.53 -51.93 -0.39 0.85 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.66 6.48 -51.93 -0.34 0.33 16 41 H 0.05 0.50 6.78 -51.93 -0.35 0.15 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.38 2.63 9.12 45.56 0.42 3.05 16 44 H 0.36 6.83 8.09 -39.29 -0.32 6.51 16 45 H 0.08 1.23 6.23 -51.93 -0.32 0.91 16 46 H 0.04 0.69 6.66 -51.93 -0.35 0.34 16 47 H 0.37 7.83 5.76 -40.82 -0.24 7.59 16 48 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 49 H 0.10 1.51 6.84 -51.93 -0.36 1.15 16 50 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 397.03 15.07 5.98 5.98 Total: -1.00 -36.49 397.03 -7.17 -43.66 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: -7.11 Total: 19.22 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -0.80 Total: 6.42 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.25 Total: -58.23 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.27 Total: -31.89 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.71 Total: 14.85 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.49 -7.17 -43.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733811413.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.591 kcal (2) G-P(sol) polarization free energy of solvation -36.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds