Wall clock time and date at job start Sat Apr 11 2020 05:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 120.00011 * 2 1 4 4 C 1.52992 * 109.47448 * 125.00331 * 3 2 1 5 5 C 1.50702 * 109.47448 * 179.97438 * 4 3 2 6 6 O 1.21278 * 119.99980 * 0.02562 * 5 4 3 7 7 N 1.34771 * 119.99850 * 180.02562 * 5 4 3 8 8 C 1.46926 * 120.63379 * 0.02562 * 7 5 4 9 9 C 1.53191 * 108.77405 * 233.58738 * 8 7 5 10 10 C 1.53042 * 109.31369 * 305.36094 * 9 8 7 11 11 C 1.53038 * 109.53449 * 61.36964 * 10 9 8 12 12 C 1.53001 * 109.49586 * 178.68492 * 11 10 9 13 13 O 1.42908 * 109.47093 * 185.28366 * 12 11 10 14 14 N 1.46895 * 109.50038 * 58.61772 * 11 10 9 15 15 C 1.46907 * 111.00269 * 64.74616 * 14 11 10 16 16 C 1.50697 * 109.47114 * 185.24558 * 15 14 11 17 17 O 1.21284 * 120.00273 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99614 * 179.97438 * 16 15 14 19 19 C 1.37093 * 120.00027 * 179.97438 * 18 16 15 20 20 H 1.08001 * 119.99857 * 0.02562 * 19 18 16 21 21 C 1.38956 * 120.00065 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99761 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00170 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.46941 * 89.99387 * 23 21 19 25 25 H 1.48495 * 109.47130 * 209.99802 * 23 21 19 26 26 H 1.48507 * 109.46899 * 330.00031 * 23 21 19 27 27 C 1.46929 * 120.62917 * 179.97438 * 7 5 4 28 28 H 1.07994 * 120.00210 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99925 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00633 * 180.02562 * 2 1 3 31 31 H 1.09005 * 109.46796 * 5.00276 * 3 2 1 32 32 H 1.09003 * 109.47434 * 245.01060 * 3 2 1 33 33 H 1.09005 * 109.47167 * 60.00172 * 4 3 2 34 34 H 1.09003 * 109.47399 * 300.00751 * 4 3 2 35 35 H 1.09000 * 109.58885 * 113.80068 * 8 7 5 36 36 H 1.08996 * 109.58706 * 353.37203 * 8 7 5 37 37 H 1.09002 * 109.49646 * 185.41198 * 9 8 7 38 38 H 1.08997 * 109.53056 * 65.33178 * 9 8 7 39 39 H 1.08998 * 109.46136 * 301.34707 * 10 9 8 40 40 H 1.09002 * 109.44786 * 181.38147 * 10 9 8 41 41 H 1.09001 * 109.47024 * 305.27796 * 12 11 10 42 42 H 1.08999 * 109.47447 * 65.28021 * 12 11 10 43 43 H 0.96694 * 113.99799 * 180.02562 * 13 12 11 44 44 H 1.00903 * 111.00156 * 188.69368 * 14 11 10 45 45 H 1.09005 * 109.46507 * 305.24895 * 15 14 11 46 46 H 1.08997 * 109.46940 * 65.24187 * 15 14 11 47 47 H 0.97005 * 119.99858 * 0.02562 * 18 16 15 48 48 H 0.96995 * 119.99648 * 180.02562 * 22 21 19 49 49 H 1.09000 * 109.58464 * 6.62240 * 27 7 5 50 50 H 1.09006 * 109.58711 * 246.20117 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1815 5 6 3.7890 2.6380 1.1811 6 8 3.5704 3.4644 0.3208 7 7 4.7062 2.8865 2.1368 8 6 4.9825 1.8950 3.1853 9 6 4.8326 2.5688 4.5529 10 6 5.7292 3.8079 4.6077 11 6 5.2941 4.8024 3.5290 12 6 6.1699 6.0547 3.6059 13 8 5.6858 7.0320 2.6824 14 7 3.8888 5.1731 3.7419 15 6 3.7213 5.8965 5.0096 16 6 2.2556 6.1462 5.2556 17 8 1.4317 5.7602 4.4537 18 7 1.8605 6.7986 6.3667 19 6 0.5272 7.0264 6.5904 20 1 -0.2065 6.6826 5.8763 21 6 0.1198 7.6985 7.7362 22 7 -1.1583 7.9163 7.9508 23 14 1.3887 8.2925 8.9717 24 1 1.8184 9.6690 8.6169 25 1 0.7922 8.2950 10.3315 26 1 2.5645 7.3856 8.9484 27 6 5.4497 4.1538 2.1494 28 1 -0.5400 0.9352 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9352 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6212 1.4028 -0.9315 33 1 3.7401 0.5066 1.0919 34 1 2.4774 1.2355 2.1130 35 1 5.9991 1.5181 3.0731 36 1 4.2740 1.0707 3.1045 37 1 5.1280 1.8711 5.3365 38 1 3.7941 2.8644 4.7016 39 1 6.7647 3.5147 4.4350 40 1 5.6429 4.2752 5.5886 41 1 6.1346 6.4612 4.6167 42 1 7.1982 5.7950 3.3544 43 1 6.1949 7.8540 2.6769 44 1 3.5363 5.7151 2.9672 45 1 4.1302 5.2998 5.8250 46 1 4.2484 6.8490 4.9567 47 1 2.5196 7.1077 7.0079 48 1 -1.4426 8.3859 8.7505 49 1 5.0495 4.8198 1.3850 50 1 6.5044 3.9606 1.9529 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733811413.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:46 Heat of formation + Delta-G solvation = -124.551381 kcal Electronic energy + Delta-G solvation = -31029.534083 eV Core-core repulsion = 26863.056439 eV Total energy + Delta-G solvation = -4166.477644 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.52634 -40.35939 -39.44238 -37.35435 -36.28785 -36.13396 -35.54008 -33.76361 -32.99403 -32.26227 -31.20286 -28.18136 -27.34943 -26.56985 -25.65871 -24.48216 -23.01600 -21.34444 -20.71931 -20.55651 -20.12572 -19.66311 -18.30475 -18.05568 -17.92064 -17.10134 -16.83778 -16.71801 -16.62016 -15.95634 -15.86533 -15.67370 -15.35246 -15.07652 -14.94286 -14.81802 -14.51518 -14.42462 -14.20035 -13.97674 -13.72410 -13.45141 -13.40397 -13.26940 -13.00362 -12.91315 -12.80149 -12.49778 -12.42840 -12.01442 -11.98695 -11.91777 -11.81742 -11.67051 -11.52334 -11.45389 -10.94516 -10.73726 -10.43838 -10.25837 -10.22266 -9.48004 -9.21703 -8.42129 -6.03318 1.27711 1.34438 1.38080 1.43406 1.72006 1.96193 2.17035 2.22145 2.67957 3.13775 3.19602 3.49626 3.58480 3.80046 3.89401 3.96548 4.09572 4.16345 4.18786 4.22219 4.30256 4.36662 4.39583 4.43704 4.44135 4.56065 4.56559 4.63975 4.68897 4.74497 4.79242 4.90505 4.94709 4.98015 5.05510 5.15140 5.20947 5.24243 5.50855 5.56670 5.66911 5.72793 5.91071 5.92048 6.13548 6.32511 6.52532 6.59677 6.87722 6.88557 7.29272 7.39017 7.97758 8.76041 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010062 B = 0.003352 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.182621 B = 8352.386044 C =10051.177783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.080 4.080 4 C -0.124 4.124 5 C 0.506 3.494 6 O -0.596 6.596 7 N -0.599 5.599 8 C 0.106 3.894 9 C -0.129 4.129 10 C -0.103 4.103 11 C 0.100 3.900 12 C 0.045 3.955 13 O -0.593 6.593 14 N -0.655 5.655 15 C 0.065 3.935 16 C 0.449 3.551 17 O -0.615 6.615 18 N -0.591 5.591 19 C -0.329 4.329 20 H 0.050 0.950 21 C -0.017 4.017 22 N -0.936 5.936 23 Si 0.968 3.032 24 H -0.258 1.258 25 H -0.273 1.273 26 H -0.229 1.229 27 C 0.131 3.869 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.137 0.863 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.129 0.871 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.046 0.954 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.396 0.604 44 H 0.335 0.665 45 H 0.117 0.883 46 H 0.069 0.931 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.058 0.942 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.685 -14.515 -5.663 29.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.169 4.169 3 C -0.117 4.117 4 C -0.164 4.164 5 C 0.296 3.704 6 O -0.477 6.477 7 N -0.330 5.330 8 C -0.016 4.016 9 C -0.168 4.168 10 C -0.141 4.141 11 C 0.008 3.992 12 C -0.034 4.034 13 O -0.402 6.402 14 N -0.286 5.286 15 C -0.067 4.067 16 C 0.237 3.763 17 O -0.499 6.499 18 N -0.233 5.233 19 C -0.459 4.459 20 H 0.068 0.932 21 C -0.215 4.215 22 N -0.577 5.577 23 Si 0.787 3.213 24 H -0.183 1.183 25 H -0.198 1.198 26 H -0.152 1.152 27 C 0.008 3.992 28 H 0.098 0.902 29 H 0.135 0.865 30 H 0.155 0.845 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.147 0.853 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.065 0.935 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.246 0.754 44 H 0.153 0.847 45 H 0.134 0.866 46 H 0.086 0.914 47 H 0.225 0.775 48 H 0.089 0.911 49 H 0.077 0.923 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 23.251 -15.360 -6.373 28.586 hybrid contribution 0.114 2.350 0.528 2.412 sum 23.365 -13.010 -5.845 27.374 Atomic orbital electron populations 1.24046 0.96466 1.02184 1.01194 1.23026 0.95936 0.98160 0.99795 1.20450 0.97610 0.95542 0.98130 1.21620 0.98955 0.94996 1.00780 1.21255 0.79033 0.89543 0.80572 1.90662 1.66840 1.50088 1.40124 1.48010 1.39000 1.18202 1.27771 1.22024 1.03321 0.90442 0.85785 1.21788 1.00393 0.97281 0.97298 1.21599 1.00511 0.94753 0.97236 1.21631 0.86770 0.94154 0.96679 1.22988 0.98043 0.89379 0.93017 1.86490 1.60404 1.29867 1.63405 1.60180 1.17616 1.47672 1.03132 1.21625 0.90692 0.99015 0.95378 1.21063 0.92224 0.80980 0.81985 1.90559 1.56504 1.55129 1.47732 1.42003 1.06669 1.53161 1.21509 1.18984 0.83148 1.36410 1.07325 0.93206 1.26158 0.99106 0.96672 0.99542 1.69816 1.16978 1.41980 1.28914 0.85329 0.78674 0.79920 0.77337 1.18262 1.19833 1.15193 1.21499 0.96518 0.85220 0.96009 0.90171 0.86521 0.84492 0.94157 0.90951 0.85309 0.88509 0.88274 0.88604 0.88378 0.93546 0.88055 0.90842 0.92029 0.90426 0.75404 0.84724 0.86571 0.91364 0.77543 0.91134 0.92315 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.04 14.32 67.78 0.97 -3.07 16 2 C -0.15 -2.83 9.52 25.65 0.24 -2.59 16 3 C -0.08 -1.91 4.95 29.85 0.15 -1.76 16 4 C -0.12 -2.59 4.03 29.85 0.12 -2.47 16 5 C 0.51 14.54 7.70 87.66 0.67 15.22 16 6 O -0.60 -23.11 15.39 -3.02 -0.05 -23.15 16 7 N -0.60 -13.58 2.89 -818.81 -2.37 -15.95 16 8 C 0.11 1.50 6.34 86.36 0.55 2.04 16 9 C -0.13 -2.11 5.93 30.67 0.18 -1.93 16 10 C -0.10 -1.50 4.43 30.62 0.14 -1.36 16 11 C 0.10 2.09 0.39 3.62 0.00 2.09 16 12 C 0.05 0.75 5.22 71.98 0.38 1.12 16 13 O -0.59 -12.63 12.73 -148.98 -1.90 -14.53 16 14 N -0.66 -20.96 4.64 -473.68 -2.20 -23.16 16 15 C 0.07 2.09 5.29 85.55 0.45 2.54 16 16 C 0.45 21.41 7.83 87.66 0.69 22.10 16 17 O -0.62 -36.63 15.89 -3.04 -0.05 -36.68 16 18 N -0.59 -28.85 5.09 -306.99 -1.56 -30.41 16 19 C -0.33 -19.95 10.16 84.04 0.85 -19.10 16 20 H 0.05 3.62 7.39 -2.91 -0.02 3.60 16 21 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 22 N -0.94 -57.64 13.96 21.67 0.30 -57.34 16 23 Si 0.97 39.16 27.74 68.60 1.90 41.06 16 24 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 26 H -0.23 -7.67 6.52 99.48 0.65 -7.02 16 27 C 0.13 2.99 5.09 86.38 0.44 3.43 16 28 H 0.08 1.87 7.84 -2.91 -0.02 1.85 16 29 H 0.12 1.82 8.06 -2.91 -0.02 1.79 16 30 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 31 H 0.04 1.24 7.75 -2.38 -0.02 1.22 16 32 H 0.07 1.77 8.10 -2.39 -0.02 1.75 16 33 H 0.13 1.63 7.94 -2.38 -0.02 1.61 16 34 H 0.10 2.04 7.69 -2.39 -0.02 2.02 16 35 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.10 1.14 5.93 -2.39 -0.01 1.12 16 37 H 0.10 1.07 8.14 -2.39 -0.02 1.06 16 38 H 0.05 1.20 7.53 -2.39 -0.02 1.19 16 39 H 0.10 0.82 8.14 -2.39 -0.02 0.81 16 40 H 0.07 1.03 6.48 -2.39 -0.02 1.02 16 41 H 0.06 0.90 6.78 -2.39 -0.02 0.88 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.40 4.83 9.12 -74.06 -0.68 4.15 16 44 H 0.33 13.44 8.09 -89.69 -0.73 12.72 16 45 H 0.12 3.01 6.23 -2.38 -0.01 2.99 16 46 H 0.07 1.91 6.66 -2.39 -0.02 1.89 16 47 H 0.39 15.55 5.76 -92.70 -0.53 15.02 16 48 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 49 H 0.06 1.86 6.84 -2.39 -0.02 1.84 16 50 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -91.89 397.03 -0.63 -92.52 By element: Atomic # 1 Polarization: 52.85 SS G_CDS: -1.02 Total: 51.83 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 6.30 Total: 15.81 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -5.82 Total: -126.86 kcal Atomic # 8 Polarization: -72.37 SS G_CDS: -1.99 Total: -74.36 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 1.90 Total: 41.06 kcal Total: -91.89 -0.63 -92.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733811413.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.033 kcal (2) G-P(sol) polarization free energy of solvation -91.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds