Wall clock time and date at job start Sat Apr 11 2020 05:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32995 * 119.99768 * 2 1 4 4 C 1.50706 * 119.99957 * 179.97438 * 3 2 1 5 5 C 1.47100 * 120.00196 * 359.97438 * 3 2 1 6 6 O 1.21614 * 120.00201 * 262.68169 * 5 3 2 7 7 N 1.34779 * 119.99957 * 82.67974 * 5 3 2 8 8 C 1.46925 * 120.63077 * 185.27903 * 7 5 3 9 9 C 1.52764 * 109.00678 * 233.58139 * 8 7 5 10 10 C 1.53041 * 109.38212 * 305.58770 * 9 8 7 11 11 O 1.42893 * 109.45021 * 301.22601 * 10 9 8 12 12 C 1.53003 * 109.45744 * 181.25742 * 10 9 8 13 13 N 1.46901 * 109.46918 * 59.93405 * 12 10 9 14 14 C 1.46906 * 111.00012 * 179.97438 * 13 12 10 15 15 C 1.50693 * 109.47042 * 180.02562 * 14 13 12 16 16 O 1.21296 * 120.00448 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00053 * 180.02562 * 15 14 13 18 18 C 1.37095 * 120.00216 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00049 * 359.97438 * 18 17 15 20 20 C 1.38944 * 119.99919 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00299 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99825 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46994 * 90.00011 * 22 20 18 24 24 H 1.48501 * 109.46942 * 210.00029 * 22 20 18 25 25 H 1.48493 * 109.47303 * 329.99759 * 22 20 18 26 26 C 1.53043 * 109.53842 * 61.24006 * 10 9 8 27 27 C 1.46926 * 120.62961 * 5.55515 * 7 5 3 28 28 H 1.09002 * 109.47042 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47083 * 300.00010 * 1 2 3 30 30 H 1.09005 * 109.47063 * 59.99911 * 1 2 3 31 31 H 1.07996 * 120.00316 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.47182 * 265.03429 * 4 3 2 33 33 H 1.09006 * 109.46826 * 25.03396 * 4 3 2 34 34 H 1.09000 * 109.46882 * 145.03430 * 4 3 2 35 35 H 1.09000 * 109.58359 * 353.41218 * 8 7 5 36 36 H 1.09002 * 109.58923 * 113.84366 * 8 7 5 37 37 H 1.08998 * 109.56299 * 185.54906 * 9 8 7 38 38 H 1.09005 * 109.35676 * 65.49748 * 9 8 7 39 39 H 0.96706 * 113.99645 * 300.06281 * 11 10 9 40 40 H 1.08996 * 109.46718 * 179.97438 * 12 10 9 41 41 H 1.08991 * 109.47458 * 299.93203 * 12 10 9 42 42 H 1.00896 * 111.00052 * 56.04322 * 13 12 10 43 43 H 1.08996 * 109.46936 * 299.99945 * 14 13 12 44 44 H 1.09002 * 109.46825 * 59.99958 * 14 13 12 45 45 H 0.96998 * 119.99487 * 359.97438 * 17 15 14 46 46 H 0.97001 * 120.00555 * 180.02562 * 21 20 18 47 47 H 1.09005 * 109.49707 * 178.67960 * 26 10 9 48 48 H 1.09003 * 109.49849 * 58.58465 * 26 10 9 49 49 H 1.09004 * 109.58532 * 246.16104 * 27 7 5 50 50 H 1.08998 * 109.58624 * 6.57956 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6790 1.1518 0.0006 5 6 1.4364 2.4257 -0.0006 6 8 1.2489 3.0192 -1.0454 7 7 0.9702 2.9352 1.1568 8 6 0.1359 4.1446 1.1601 9 6 0.7507 5.1705 2.1105 10 6 0.9421 4.5347 3.4894 11 8 -0.3204 4.0855 3.9856 12 6 1.5287 5.5701 4.4511 13 7 0.6113 6.7123 4.5599 14 6 1.1428 7.7288 5.4778 15 6 0.1765 8.8819 5.5641 16 8 -0.8533 8.8596 4.9237 17 7 0.4571 9.9387 6.3522 18 6 -0.4217 10.9881 6.4304 19 1 -1.3386 10.9681 5.8601 20 6 -0.1326 12.0772 7.2432 21 7 0.9828 12.1013 7.9375 22 14 -1.3298 13.5074 7.3491 23 1 -2.2992 13.2612 8.4468 24 1 -0.5810 14.7605 7.6218 25 1 -2.0606 13.6374 6.0631 26 6 1.8980 3.3449 3.3762 27 6 1.2916 2.2952 2.4397 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 2.0470 -0.9352 -0.0004 32 1 4.0419 1.2410 1.0245 33 1 4.0425 0.2206 -0.4340 34 1 4.0425 1.9939 -0.5884 35 1 0.0923 4.5611 0.1538 36 1 -0.8696 3.8941 1.4982 37 1 0.0883 6.0319 2.1958 38 1 1.7168 5.4910 1.7204 39 1 -0.9773 4.7885 4.0831 40 1 1.6647 5.1176 5.4333 41 1 2.4919 5.9125 4.0731 42 1 -0.3080 6.4116 4.8470 43 1 1.2750 7.2912 6.4673 44 1 2.1035 8.0862 5.1072 45 1 1.2808 9.9568 6.8641 46 1 1.1845 12.8615 8.5052 47 1 2.0522 2.9070 4.3624 48 1 2.8532 3.6826 2.9742 49 1 0.3822 1.8906 2.8842 50 1 2.0100 1.4917 2.2774 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733882247.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:57 Heat of formation + Delta-G solvation = -109.548448 kcal Electronic energy + Delta-G solvation = -29965.227100 eV Core-core repulsion = 25799.400031 eV Total energy + Delta-G solvation = -4165.827068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.75933 -39.12851 -38.17318 -35.92461 -35.66981 -34.67032 -33.81785 -31.93674 -31.41363 -31.23941 -30.55476 -28.25688 -26.01947 -25.16760 -24.13249 -23.86998 -22.75577 -21.66152 -20.31486 -19.36938 -18.52861 -17.97638 -16.95543 -16.80932 -16.15046 -15.88758 -15.77371 -15.59535 -14.91143 -14.67634 -14.64505 -14.42376 -14.16888 -14.06775 -13.89155 -13.73579 -13.37461 -13.26805 -13.14846 -13.06347 -12.78313 -12.63538 -12.31174 -12.12401 -11.97347 -11.91918 -11.86457 -11.61237 -11.55217 -11.44037 -11.29615 -11.06829 -10.64954 -10.41862 -10.25196 -10.05045 -9.98810 -9.54607 -9.27388 -8.83002 -8.53104 -8.17047 -8.00312 -6.45195 -3.86240 1.41827 2.37927 2.84324 3.15529 3.24626 3.30516 3.85288 3.93769 4.02109 4.17842 4.23692 4.47310 4.53593 4.67601 4.72121 4.81084 4.88261 5.04814 5.05778 5.10794 5.13990 5.20835 5.22220 5.26308 5.29735 5.32282 5.41346 5.48406 5.52602 5.60151 5.63176 5.69699 5.70035 5.73495 5.82757 5.89883 6.01310 6.03321 6.11677 6.19861 6.20889 6.40190 7.03827 7.17785 7.43414 7.51922 7.55676 7.93786 8.02122 8.56726 9.14002 9.49930 10.00762 10.72391 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029833 B = 0.001875 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.339393 B =14931.279319 C =15105.833671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 C -0.168 4.168 4 C -0.105 4.105 5 C 0.559 3.441 6 O -0.541 6.541 7 N -0.603 5.603 8 C 0.114 3.886 9 C -0.152 4.152 10 C 0.140 3.860 11 O -0.560 6.560 12 C 0.032 3.968 13 N -0.665 5.665 14 C 0.052 3.948 15 C 0.440 3.560 16 O -0.584 6.584 17 N -0.562 5.562 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.931 3.069 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.269 1.269 26 C -0.120 4.120 27 C 0.117 3.883 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.381 0.619 40 H 0.036 0.964 41 H 0.079 0.921 42 H 0.345 0.655 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.078 0.922 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.743 -24.876 -9.143 27.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.135 4.135 3 C -0.171 4.171 4 C -0.162 4.162 5 C 0.347 3.653 6 O -0.418 6.418 7 N -0.336 5.336 8 C -0.008 4.008 9 C -0.190 4.190 10 C 0.099 3.901 11 O -0.368 6.368 12 C -0.098 4.098 13 N -0.299 5.299 14 C -0.081 4.081 15 C 0.225 3.775 16 O -0.469 6.469 17 N -0.199 5.199 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.758 3.242 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.158 4.158 27 C -0.006 4.006 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.142 0.858 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.230 0.770 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.164 0.836 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.101 0.899 48 H 0.098 0.902 49 H 0.096 0.904 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.555 -24.662 -10.564 27.398 hybrid contribution -0.262 0.977 1.492 1.803 sum 5.293 -23.684 -9.072 25.909 Atomic orbital electron populations 1.20979 0.92665 1.02899 1.02791 1.23316 0.96402 0.96679 0.97098 1.21460 0.97025 0.93026 1.05567 1.20699 0.89741 1.03308 1.02484 1.18547 0.78334 0.84956 0.83424 1.90808 1.58567 1.60942 1.31488 1.48146 1.51166 1.28186 1.06086 1.21531 0.93639 0.84386 1.01273 1.22411 1.03353 0.98853 0.94388 1.21122 0.84352 0.92389 0.92236 1.86451 1.23134 1.39447 1.87737 1.22648 0.97443 0.91413 0.98274 1.60100 1.05366 1.11137 1.53300 1.21661 0.98827 0.93039 0.94530 1.19775 0.88567 0.84806 0.84346 1.90520 1.27846 1.80836 1.47658 1.41863 1.21536 1.16469 1.40008 1.19702 1.02553 0.95452 1.25245 0.87883 1.25274 0.97227 0.99184 0.96265 1.69608 1.23805 1.32176 1.28648 0.85847 0.79658 0.79866 0.78862 1.20407 1.20902 1.19377 1.21890 0.97912 0.95510 1.00528 1.21609 1.01017 0.95004 0.82994 0.91382 0.91048 0.91137 0.85768 0.91012 0.91030 0.91276 0.89124 0.90948 0.88244 0.90903 0.76962 0.94538 0.90272 0.83559 0.93768 0.89538 0.77461 0.91834 0.89904 0.90152 0.90409 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.16 36.00 0.33 -0.65 16 2 C -0.12 -0.81 9.90 -36.13 -0.36 -1.17 16 3 C -0.17 -1.45 3.73 -102.84 -0.38 -1.83 16 4 C -0.11 -0.69 10.04 36.01 0.36 -0.33 16 5 C 0.56 6.54 5.93 -12.66 -0.08 6.46 16 6 O -0.54 -8.54 16.52 5.26 0.09 -8.45 16 7 N -0.60 -6.10 2.98 -174.42 -0.52 -6.62 16 8 C 0.11 1.24 6.18 -3.93 -0.02 1.22 16 9 C -0.15 -1.65 4.93 -26.83 -0.13 -1.78 16 10 C 0.14 1.38 0.78 -90.58 -0.07 1.30 16 11 O -0.56 -5.75 11.66 -35.23 -0.41 -6.16 16 12 C 0.03 0.36 4.86 -3.82 -0.02 0.34 16 13 N -0.67 -9.60 5.32 -115.06 -0.61 -10.21 16 14 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 15 C 0.44 10.05 7.82 -10.99 -0.09 9.96 16 16 O -0.58 -15.31 15.78 5.54 0.09 -15.22 16 17 N -0.56 -14.00 5.29 -10.97 -0.06 -14.05 16 18 C -0.30 -8.27 9.68 -14.94 -0.14 -8.41 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 22 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 26 C -0.12 -0.96 5.11 -26.61 -0.14 -1.10 16 27 C 0.12 0.93 6.00 -3.71 -0.02 0.90 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.54 8.02 -51.93 -0.42 0.12 16 30 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 31 H 0.12 0.59 8.02 -52.49 -0.42 0.17 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.36 8.01 -51.93 -0.42 -0.06 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 1.14 6.99 -51.93 -0.36 0.77 16 36 H 0.07 0.76 7.81 -51.93 -0.41 0.36 16 37 H 0.10 1.24 7.56 -51.93 -0.39 0.84 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.38 3.61 7.46 45.56 0.34 3.95 16 40 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.34 5.02 6.83 -39.29 -0.27 4.75 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 46 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.08 0.65 7.81 -51.93 -0.41 0.24 16 50 H 0.08 0.54 6.35 -51.93 -0.33 0.21 16 LS Contribution 404.99 15.07 6.10 6.10 Total: -1.00 -33.09 404.99 -8.07 -41.16 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -7.56 Total: 14.91 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -0.89 Total: 6.24 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.46 Total: -54.44 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.24 Total: -29.83 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.09 -8.07 -41.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733882247.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.389 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds