Wall clock time and date at job start Sat Apr 11 2020 05:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33000 * 119.99772 * 2 1 4 4 C 1.50698 * 120.00310 * 359.97438 * 3 2 1 5 5 C 1.47109 * 119.99840 * 179.97438 * 3 2 1 6 6 O 1.21616 * 119.99712 * 335.54056 * 5 3 2 7 7 N 1.34776 * 119.99652 * 155.53958 * 5 3 2 8 8 C 1.46916 * 120.63319 * 353.60528 * 7 5 3 9 9 C 1.53194 * 108.77393 * 233.58659 * 8 7 5 10 10 C 1.53036 * 109.31354 * 305.36190 * 9 8 7 11 11 O 1.42900 * 109.46433 * 301.36010 * 10 9 8 12 12 C 1.52998 * 109.45969 * 181.38363 * 10 9 8 13 13 N 1.46906 * 109.47237 * 185.00060 * 12 10 9 14 14 C 1.46898 * 111.00141 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47073 * 180.02562 * 14 13 12 16 16 O 1.21297 * 119.99775 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00025 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99871 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00038 * 359.97438 * 18 17 15 20 20 C 1.38955 * 120.00136 * 179.97438 * 18 17 15 21 21 N 1.31410 * 119.99400 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00276 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47116 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47230 * 119.99776 * 22 20 18 25 25 H 1.48503 * 109.47407 * 240.00062 * 22 20 18 26 26 C 1.53047 * 109.53612 * 61.36735 * 10 9 8 27 27 C 1.46930 * 120.62646 * 173.58043 * 7 5 3 28 28 H 1.08995 * 109.47795 * 300.00586 * 1 2 3 29 29 H 1.09012 * 109.47069 * 60.00282 * 1 2 3 30 30 H 1.09003 * 109.47294 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00459 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47032 * 277.12505 * 4 3 2 33 33 H 1.09004 * 109.46436 * 37.11951 * 4 3 2 34 34 H 1.09001 * 109.47216 * 157.11912 * 4 3 2 35 35 H 1.09002 * 109.59043 * 113.80233 * 8 7 5 36 36 H 1.09004 * 109.70674 * 353.44097 * 8 7 5 37 37 H 1.09004 * 109.50116 * 185.41411 * 9 8 7 38 38 H 1.09000 * 109.50040 * 65.32041 * 9 8 7 39 39 H 0.96698 * 114.00072 * 180.02562 * 11 10 9 40 40 H 1.08999 * 109.47845 * 305.00226 * 12 10 9 41 41 H 1.09001 * 109.47371 * 65.00612 * 12 10 9 42 42 H 1.00906 * 110.99793 * 56.04801 * 13 12 10 43 43 H 1.08997 * 109.47164 * 300.00013 * 14 13 12 44 44 H 1.08999 * 109.47281 * 60.00310 * 14 13 12 45 45 H 0.96999 * 120.00244 * 359.97438 * 17 15 14 46 46 H 0.97005 * 119.99764 * 180.02562 * 21 20 18 47 47 H 1.08996 * 109.49526 * 58.58599 * 26 10 9 48 48 H 1.08995 * 109.49354 * 178.68248 * 26 10 9 49 49 H 1.08995 * 109.58577 * 246.19801 * 27 7 5 50 50 H 1.08999 * 109.58714 * 6.62934 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4184 2.4569 -0.0006 5 6 3.6430 1.1519 0.0006 6 8 4.2509 0.1932 0.4371 7 7 4.3170 2.2142 -0.4827 8 6 3.6035 3.3176 -1.1399 9 6 4.2250 3.5540 -2.5200 10 6 5.7302 3.7830 -2.3647 11 8 5.9553 4.9067 -1.5111 12 6 6.3489 4.0537 -3.7376 13 7 7.8085 4.1548 -3.6056 14 6 8.4380 4.4156 -4.9070 15 6 9.9317 4.5120 -4.7322 16 8 10.4234 4.3772 -3.6316 17 7 10.7210 4.7490 -5.7986 18 6 12.0799 4.8373 -5.6394 19 1 12.5177 4.7173 -4.6595 20 6 12.8938 5.0811 -6.7389 21 7 12.3609 5.2277 -7.9312 22 14 14.7452 5.2021 -6.5220 23 1 15.0901 5.0022 -5.0915 24 1 15.4089 4.1566 -7.3415 25 1 15.2085 6.5431 -6.9607 26 6 6.3764 2.5390 -1.7506 27 6 5.7793 2.2911 -0.3618 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 2.0470 -0.9353 0.0004 32 1 1.1268 2.7076 -1.0204 33 1 0.5269 2.3619 0.6193 34 1 2.0566 3.2451 0.3991 35 1 3.6951 4.2219 -0.5382 36 1 2.5506 3.0589 -1.2528 37 1 3.7691 4.4313 -2.9790 38 1 4.0528 2.6820 -3.1508 39 1 6.8896 5.1109 -1.3679 40 1 6.1011 3.2368 -4.4154 41 1 5.9546 4.9886 -4.1359 42 1 8.1913 3.3246 -3.1783 43 1 8.2046 3.6014 -5.5932 44 1 8.0581 5.3531 -5.3130 45 1 10.3278 4.8572 -6.6787 46 1 12.9291 5.3975 -8.6988 47 1 6.1840 1.6765 -2.3886 48 1 7.4517 2.6939 -1.6619 49 1 6.0482 3.1116 0.3033 50 1 6.1627 1.3526 0.0385 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733882248.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:01 Heat of formation + Delta-G solvation = -89.597719 kcal Electronic energy + Delta-G solvation = -29800.277431 eV Core-core repulsion = 25635.315491 eV Total energy + Delta-G solvation = -4164.961940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.82172 -39.07290 -38.15703 -36.12526 -35.87203 -34.71632 -33.81866 -31.97685 -31.70881 -31.23726 -29.52531 -28.26655 -26.87197 -25.59144 -24.05422 -23.88488 -22.55696 -21.23707 -19.96751 -19.33507 -18.62035 -17.94874 -17.04788 -16.76754 -16.42336 -15.95938 -15.77505 -15.47101 -15.04543 -14.90280 -14.58198 -14.30782 -14.23699 -14.04511 -13.96031 -13.74278 -13.51898 -13.42707 -13.09054 -12.95342 -12.84683 -12.60722 -12.42048 -12.02987 -11.84006 -11.72672 -11.71556 -11.62438 -11.54052 -11.34942 -11.24494 -11.06715 -10.52513 -10.36263 -10.25167 -9.95930 -9.86929 -9.55028 -9.44638 -8.78796 -8.51665 -8.17057 -7.99612 -6.44737 -3.85644 1.09372 2.75653 2.95987 3.14556 3.25464 3.32656 3.86497 3.98889 4.10796 4.19405 4.26903 4.46638 4.50714 4.65802 4.71918 4.76426 4.81846 4.87603 4.99085 5.05379 5.09932 5.13956 5.18290 5.21848 5.27873 5.35949 5.41111 5.42701 5.47669 5.52732 5.60236 5.65491 5.70293 5.76418 5.83452 5.89772 5.92384 6.03395 6.06181 6.13890 6.21294 6.38350 7.06813 7.22239 7.51898 7.52763 7.74521 7.97067 8.03149 8.57456 9.14753 9.50740 10.01604 10.72970 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030053 B = 0.001825 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.463193 B =15338.701485 C =15581.418633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C -0.189 4.189 4 C -0.121 4.121 5 C 0.554 3.446 6 O -0.548 6.548 7 N -0.603 5.603 8 C 0.084 3.916 9 C -0.121 4.121 10 C 0.143 3.857 11 O -0.555 6.555 12 C 0.031 3.969 13 N -0.670 5.670 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.584 6.584 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C -0.166 4.166 27 C 0.119 3.881 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.389 0.611 40 H 0.034 0.966 41 H 0.081 0.919 42 H 0.348 0.652 43 H 0.043 0.957 44 H 0.087 0.913 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.072 0.928 48 H 0.090 0.910 49 H 0.075 0.925 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.068 -5.225 10.521 28.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.098 4.098 3 C -0.192 4.192 4 C -0.177 4.177 5 C 0.344 3.656 6 O -0.427 6.427 7 N -0.335 5.335 8 C -0.038 4.038 9 C -0.160 4.160 10 C 0.102 3.898 11 O -0.363 6.363 12 C -0.099 4.099 13 N -0.304 5.304 14 C -0.081 4.081 15 C 0.225 3.775 16 O -0.469 6.469 17 N -0.199 5.199 18 C -0.429 4.429 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.542 5.542 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.205 4.205 27 C -0.003 4.003 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.141 0.859 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.239 0.761 40 H 0.052 0.948 41 H 0.099 0.901 42 H 0.169 0.831 43 H 0.061 0.939 44 H 0.105 0.895 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.108 0.892 49 H 0.093 0.907 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -25.941 -5.098 11.503 28.831 hybrid contribution 1.420 -0.652 -1.290 2.026 sum -24.521 -5.750 10.213 27.178 Atomic orbital electron populations 1.20978 0.92025 1.03085 1.02582 1.23520 0.96319 0.97684 0.92323 1.21399 0.92772 0.96771 1.08282 1.21187 1.00083 0.94562 1.01878 1.18493 0.87745 0.81854 0.77545 1.90783 1.70080 1.33900 1.47939 1.47957 1.07626 1.20178 1.57732 1.22609 0.98092 0.90002 0.93105 1.21916 0.93837 1.02595 0.97659 1.21006 0.94238 0.85749 0.88850 1.86362 1.32302 1.48745 1.68894 1.22698 0.89289 1.01313 0.96554 1.60098 1.02301 1.44976 1.23065 1.21662 0.94685 1.01374 0.90389 1.19784 0.87451 0.84640 0.85595 1.90520 1.75461 1.55684 1.25191 1.41867 1.07022 1.62326 1.08696 1.19763 0.81202 1.45785 0.96188 0.87823 1.25275 1.00797 0.97209 0.94671 1.69621 1.36491 1.49080 0.99043 0.85790 0.82059 0.77765 0.78674 1.19196 1.20765 1.20708 1.22645 1.01658 0.98820 0.97369 1.21508 0.78761 1.03173 0.96907 0.90655 0.90736 0.91416 0.85917 0.90218 0.91225 0.90700 0.90350 0.87070 0.89768 0.90520 0.76111 0.94834 0.90071 0.83081 0.93856 0.89510 0.77462 0.91897 0.90963 0.89200 0.90690 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.57 9.00 36.00 0.32 -0.25 16 2 C -0.08 -0.60 9.81 -36.13 -0.35 -0.95 16 3 C -0.19 -1.60 5.65 -102.84 -0.58 -2.18 16 4 C -0.12 -0.64 7.36 36.00 0.27 -0.38 16 5 C 0.55 6.58 7.46 -12.66 -0.09 6.48 16 6 O -0.55 -8.57 15.90 5.26 0.08 -8.49 16 7 N -0.60 -6.29 2.97 -174.16 -0.52 -6.80 16 8 C 0.08 0.67 4.46 -3.72 -0.02 0.65 16 9 C -0.12 -1.01 5.11 -26.61 -0.14 -1.15 16 10 C 0.14 1.47 0.79 -90.58 -0.07 1.40 16 11 O -0.56 -6.30 11.70 -35.23 -0.41 -6.71 16 12 C 0.03 0.36 4.93 -3.82 -0.02 0.35 16 13 N -0.67 -10.01 5.64 -115.06 -0.65 -10.66 16 14 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 15 C 0.44 10.19 7.82 -10.99 -0.09 10.11 16 16 O -0.58 -15.51 15.78 5.54 0.09 -15.42 16 17 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 18 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 19 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 22 Si 0.93 20.98 29.55 -169.99 -5.02 15.95 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 C -0.17 -1.79 4.67 -26.61 -0.12 -1.91 16 27 C 0.12 1.32 6.20 -3.71 -0.02 1.30 16 28 H 0.07 0.28 7.42 -51.93 -0.39 -0.11 16 29 H 0.07 0.26 8.10 -51.92 -0.42 -0.16 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.12 1.08 7.70 -52.49 -0.40 0.67 16 32 H 0.08 0.30 6.80 -51.93 -0.35 -0.06 16 33 H 0.07 0.29 6.79 -51.93 -0.35 -0.07 16 34 H 0.07 0.43 6.20 -51.93 -0.32 0.10 16 35 H 0.08 0.66 7.68 -51.93 -0.40 0.26 16 36 H 0.11 0.66 3.14 -52.81 -0.17 0.49 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.39 4.44 8.66 45.56 0.39 4.83 16 40 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.35 5.41 6.28 -39.29 -0.25 5.16 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 46 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.09 1.03 6.44 -51.93 -0.33 0.70 16 49 H 0.07 0.82 7.81 -51.93 -0.41 0.41 16 50 H 0.09 1.14 7.00 -51.93 -0.36 0.77 16 LS Contribution 394.32 15.07 5.94 5.94 Total: -1.00 -33.43 394.32 -7.98 -41.41 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -6.97 Total: 16.30 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -1.19 Total: 6.34 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.50 Total: -55.33 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.24 Total: -30.62 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.43 -7.98 -41.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733882248.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.187 kcal (2) G-P(sol) polarization free energy of solvation -33.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds